Magnetostratigraphic dating of mammalian fossils in Junggar Basin；northwest China

IEECAS SKLLQG

Y-chromosome evidence for no independent origin of modern human in China

East Asia is one of the few regions in the world where a large number of human fossils have been unearthed. The continuity of hominid fossils in East Asia, particularly in China has been presented as strong evidence supporting an independent origin of mod

Molecular characterization of six Chinese families with m.3460G > A and Leber hereditary optic neuropathy

The primary mutation m.3460G > A occurs with a very low frequency (similar to 1%) in Chinese patients with Leber hereditary optic neuropathy (LHON). Up to now, there is no comprehensive study of Chinese patients harboring this mutation. We characterized six unrelated probands with m.3460G > A in this study, which were identified from 1,626 patients with LHON or suspected with LHON. The overall penetrance of LHON (25.6% [10/39]) in four pedigrees with m.3460G > A was substantially lower than those families with m.11778G > A (33.3% [619/1859]) as reported in our previous study. Intriguingly, family Le688 with a heteroplasmic m.3460G > A presented a lower penetrance (12.5%) than the other three families with a homoplasmic mutation. There is an elevated gender bias (affected male to affected female = 4:1) in the four families with m.3460G > A compared to those LHON families with m.11778G > A (2.4:1). Complete mtDNA sequencing indicated that the six matrilines belonged to haplogroups B4d1, F2, A5b, M12a, D4b2b, and D4b2, respectively. We did not identify any potential secondary mutation(s) that will affect or be associated with the penetrance of LHON in the six probands by using an evolutionary analysis and protein secondary-structure prediction. Taken together, our results suggested that the m.3460G > A mutation occurred multiple times in Chinese LHON patients. The heteroplasmic status of mutation m.3460G > A might influence the penetrance of LHON in family Le688.

Evolutionary status of Entamoeba

In addition to its medical importance as parasitic pathogen, Entamoeba has aroused people's interest in its evolutionary status for a long time. Lacking mitochondrion and other intracellular organelles common to typical eukaryotes, Entamoeba and several other amitochondrial protozoans have been recognized as ancient pre-mitochondriate eukaryotes and named "archezoa", the most primitive extant eukaryotes. It was suggested that they might be living fossils that remained in a primitive stage of evolution before acquisition of organelles, lying close to the transition between prokaryotes and eukaryotes. However, recent studies revealed that Entamoeba contained an organelle, "crypton" or "mitosome", which was regarded as specialized or reductive mitochondrion. Relative molecular phylogenetic analyses also indicated the existence or the probable existence of mitochondrion in Entamoeba. Our phylogenetic analysis based on DNA topoisomerase II strongly suggested its divergence after some mitchondriate eukaryotes. Here, all these recent researches are reviewed and the evolutionary status of Entamoeba is discussed.

Morphometric analysis of Macaca arctoides and M-thibetana in relation to other macaque species

As a first step in reviewing the classification of the two stump-tailed macaque species, Macaca arctoides and M. thibetana, as compared with other species of the genus Macaca, 72 linear dental and cranial variables of 11 macaque species were examined by morphometric analyses. The results indicate that the two stump-tailed species are the largest of the macaques and although rather similar overall, they exhibit significant differences in the pattern of variation in most of the five skull regions as shown by Principal Components and Canonical Variate Analyses. Euclidean Distances based on Canonical Variate scores indicate that the females of M. arctoides and M. thibetana are more widely separated than eight other pairs of macaque species, and that the separations of the respective males are greater than those of three other pairs of species. These findings are consistent with FOODEN's classification of the stump-tailed macaques as two separate species (FOODEN, 1976; FOODEN et al., 1985). The present results suggest, as other researchers have proposed on the basis of external features, biochemistry and genetics, that the two stump-tailed macaque species and M. assamensis are closely related. The results also tentatively imply associations with M. fuscata and M. sylvanus but these require further study. The findings have implications for the assessment of the various Chinese Pleistocene macaque fossils.

Extraordinarily thick-boned fish linked to the aridification of the Qaidam Basin (northern Tibetan Plateau)

Scattered with numerous salt lakes and approximate to 2,700-3,200 m above sea level, the giant Qaidam inland basin on the northern Tibetan Plateau has experienced continuing aridification since the beginning of the Late Cenozoic as a result of the India-Asia plate collision and associated uplift of the Tibetan Plateau. Previous evidence of aridification comes mainly from evaporite deposits and salinity-tolerant invertebrate fossils. Vertebrate fossils were rare until recent discoveries of abundant fish. Here, we report an unusual cyprinid fish, Hsianwenia wui, gen. et sp. nov., from Pliocene lake deposits of the Qaidam Basin, characterized by an extraordinarily thick skeleton that occupied almost the entire body. Such enormous skeletal thickening, apparently leaving little room for muscles, is unknown among extant fish. However, an almost identical condition occurs in the much smaller cyprinodontid Aphanius crassicaudus (Cyprinodonyiformes), collected from evaporites exposed along the northern margins of the Mediterranean Sea during the Messinian desiccation period. H. wui and A. crassicaudus both occur in similar deposits rich in carbonates (CaCO3) and sulfates (CaSO4), indicating that both were adapted to the extreme conditions resulting from the ariclification in the two areas. The overall skeletal thickening was most likely formed through deposition of the oversaturated calcium and was apparently a normal feature of the biology and growth of these fish.

Mitochondrial molecular clocks and the origin of the major Otocephalan clades (Pisces : Teleostei): A new insight

The Otocephala, a clade including ostariophysan and clupeomorph telcosts, represents about a quarter of total fish species diversity, with about 1000 gencra and more than 7000 species. A series of recent papers have defended that the origin of this clade and of its major groups may be significantly older than the oldest fossils of each of these groups suggest. Some of these recent papers explicitly defend a Pangean origin for some otocephalan groups Such as the Siluriformes or Cypriniformes. To know whether or not the otocephalans as a whole, and particularly the mainly freshwater, cosmopolitan otophysans could have originated before the splitting of the Pangean Supercontinent is of extreme importance, since otophysan fishes are among the most useful animal groups for the determination of historical continental relationships. In the present work we examined divergence times for each major otocephalan group by an analysis of complete mtDNA sequences, in order to investigate if these divergence times support the hypotheses advanced in recent studies. The complete mtDNA sequences of nine representative non-otocephalan fish species and of twenty-one representative otocephalan species was compared. The present study is thus, among the studies dealing with molecular divergence times of telcosts, the one in which a greater number of otocephalan species are included. The divergence times obtained support that the major otocephalan groups had a much older origin than the oldest fossil records available for these groups suggest. The origin of the Otocephala is estimated as having occurred about 282 Mya, with the origin of the Otophysi being estimated at about 251 Mya. (c) 2005 Elsevier B.V. All rights reserved.

Two possible hydrothermal vents in the northern Okinawa Trough

As the Okinawa Trough is a back-are basin in early spreading, modern submarine hydrothermal activity and minerallization have many characteristics which have aroused wide attention. Up to now three well-known hydrothermal venting areas are all located in the middle part of the trough, During two cruise investigations to map and sample the seafloor numbers of Calyptogena sp, shells were dredged at two sites in the northern trough with comparatively thicker crust and numerous submarine volcanoes. Based on the fact that Calyptogena sp, is only observed around the hydrothermal vents and lives on hydrothermal activities, it is predicted that there is the possibility of modern hydrothermal activities in the northern part of the trough. In this note, the shell is carefully characterized and the sample locations with possible hydrothermal activity are given. it Is pointed out that the research of biogenic fossils to trace hydrothermal activity changes in venting time, strength fluctuations, evolution In chemical compositions and so on should be stressed in the future in addition to the study of the ecological characteristics of hydrothermal organisms.

The unique skeleton of siliceous sponges (Porifera; Hexactinellida and Demospongiae) that evolved first from the Urmetazoa during the Proterozoic: a review

Sponges (phylum Porifera) had been considered as an enigmatic phylum, prior to the analysis of their genetic repertoire/tool kit. Already with the isolation of the first adhesion molecule, galectin, it became clear that the sequences of sponge cell surface receptors and of molecules forming the intracellular signal transduction pathways triggered by them, share high similarity with those identified in other metazoan phyla. These studies demonstrated that all metazoan phyla, including Porifera, originate from one common ancestor, the Urmetazoa. The sponges evolved prior to the Ediacaran-Cambrian boundary (542 million years ago [myr]) during two major "snowball earth events", the Sturtian glaciation (710 to 680 myr) and the Varanger-Marinoan ice ages (605 to 585 myr). During this period the ocean was richer in silica due to the silicate weathering. The oldest sponge fossils (Hexactinellida) have been described from Australia, China and Mongolia and are thought to have existed coeval with the diverse Ediacara fauna. Only little younger are the fossils discovered in the Sansha section in Hunan (Early Cambrian; China). It has been proposed that only the sponges possessed the genetic repertoire to cope with the adverse conditions, e.g. temperature-protection molecules or proteins protecting them against ultraviolet radiation. The skeletal elements of the Hexactinellida (model organisms Monorhaphis chuni and Monorhaphis intermedia or Hyalonema sieboldi) and Demospongiae (models Suberites domuncula and Geodia cydonium), the spicules, are formed enzymatically by the anabolic enzyme silicatein and the catabolic enzyme silicase. Both, the spicules of Hexactinellida and of Demospongiae, comprise a central axial canal and an axial filament which harbors the silicatein. After intracellular formation of the first lamella around the channel and the subsequent extracellular apposition of further lamellae the spicules are completed in a net formed of collagen fibers. The data summarized here substantiate that with the finding of silicatein a new aera in the field of bio/inorganic chemistry started. For the first time strategies could be formulated and experimentally proven that allow the formation/synthesis of inorganic structures by organic molecules. These findings are not only of importance for the further understanding of basic pathways in the body plan formation of sponges but also of eminent importance for applied/commercial processes in a sustainable use of biomolecules for novel bio/inorganic materials.

重庆老龙洞二叠系-三叠系界线地层微生物岩研究

The largest mass extinction in the Phanerozoic happened at the end of the Permian. The microbialites formed in the extreme environments after the mass extinction has become a hotspot for geologists and paleontologists throughout the world. The dendroid microbialites that were described for the first time in 1999 from the Permian-Triassic boundary section at Laolongdong, Chongqing, have been studied by many geologists from China and overseas. Two important viewpoints about their origin have been proposed. Some researchers believed that they resemble Quaternary travertine shrubs in form, and may belong to microbialites. Some other researchers proposed that the dendroid structure is composed of clots formed by coccoidal cynaobacteria, and is microbialite. Our detailed survey on the section reveals that: (1) there is an interval of speckled “microbialite” in the section, and it underlies the dendroid “microbialite”, (2) the dendroid “microbialite” does not always have dendroid appearance; they are dendroid only in very local places; they are not dendroid in most places; for this reason, they are not comparable to recent tufa; (3) the volume of the dendroid structure greatly increases toward the top of the dendroid microbialite interval: accounting to 70% of the whole rock in the top part. This distribution pattern implies that the formation of this structure may be related to downward migration of the diagenetic fluid. Examination of thin sections reveals that the dendroid structure or point-like structure in the “microbialite” look as lighter areas in the thin sections and are composed of large blocky clear calcites containing scattered yellow dirty small calcite rhombi and irregular “points” of relict lime mudstone or wackestone or packstone. Their formation is by any one of the following two processes: (1) dissolution → filling of large blocky calcite; (2) dolomitization → dedolomitization → dissolution by meteoric fresh water → filling by large blocky calcites. It has been found that there are at least two sea-level falls during the P-T transition. As the sea level fall, the carbonate deposits came into supratidal environment, and suffered dolomitization caused by evaporative fluid or mixing water of sea water and meteoric water. Since the fluid migrated downward from the top of the deposits and in random pathway, the dolomitization formed dendroid or speckled dolomitic areas. As the deposits came into subaerial environments, the meteoric fresh water migrated along the dendroid or speckled dolomitic area with higher porosity, and dissolution happened, which caused the rock became spongy or alveolate. In later time, after the strata came into phreatic zone, large clear blocky calcites grew in and filled the pores in the spongy areas. The dendroid and speckled structure were formed in this way, rather than composed of clots formed by coccoid cyanobecteria. The microbial fossils in Laolongdong section include two types. The first is the tube-like cyanobecteria in middle Bed 3, which are generally less than 1 mm in length, taper toward one end, and are internally filled by microspars. They are straight or sinuous, with micritic wall 0.005~0.01 mm thick. Since this kind of microbial fossils are abundant in middle Bed 3, this rock belongs to microbialite. The second type occurs in Bed 5 and lower and middle Bed 6. They are irregular globular in shape, generally 0.2 ~ 0.5 mm in size, with several outward progresses, and internally filled by one layer of needle-like calcite cements on the wall and the large blocky calcite in the inner space. According to their shape and preservation way, it is inferred that this kind of fossils were formed from some kind of bacterial colony. The bacterial colony may be cuticle in composition, since it has some hardness as it is indicated by its resistance to deposit loading. These organisms discomposed during diagenetic time, and formed good porosity. In later diagenetic time, these pores were firstly cemented by needle-like calcites and later filled by large blocky calcites. So, the bacterial colony promoted the formation of dendroid and speckled structures. However, they did not always form such structures. On the other hand, even though no bacterial colony or other microbes or any kind of fossils were present, dendroid or speckled structures can form. Bed 4 of Laolongdong section contains abundant gastropods but no microbial fossils, and is not microbialite, even though it is speckled. The top of Bed 6 is dendroid, but contain no microbial fossils, and is not micrbialite.

巴丹吉林沙漠及其南缘地区的水化学和环境同位素特征与环境演变

The Badain Jaran Desert lies on the Alashan Plateau in western Inner Mongolia. Because of huge dunes, permanent lakes and on the northern fringe of the Asian summer monsoon, the Badain Jaran Desert has been drawing attentions of many experts. And they have made great progress in dune’s geomorphology, botany in desert, paleoclimate change and other study areas. We analyzed environmental isotope and ion chemistry in lakes and groundwater of the desert and southeastern area, and collected some other evidences from 14C dating, fossils and archeology. According to chemical analysis, we discuss the difference spatial character of ion chemistry and environmental isotope in lakes and groundwater of the desert and adjacent. Contrasting with ion chemistry and isotope results in other arid area, we argue origin of groundwater and lakes in the desert area, and get a preliminary understanding of desert lakes’ evolution during Holocene. Some main conclusions were drawn as follows: 1. It has a obvious difference in hydrophysical parameters between lakes and groundwater in the desert and margin. 2. The results of ion analysis show that Na+ and Cl- are dominant in most lakes of the desert. Meanwhile, Na+ 、Cl- and HCO3- are dominant in groundwater of the desert and adjacent, and alsoMg2+、Ca2+、and NO3- have more percentage than in lakes. 3. Owing to different solubilities, the conten of main ions in water varies with the content of TDS. Whereas the content of TDS is over 100 g/L, the content of SO42-、HCO3-、Mg2+and Ca2+ in lakes descend. 4. The result of isotope analyzing indicate the lakes and groundwater in southeast desert have a similar vaporing trend with the groundwater in the southeast margin of the desert. It imply there would have some kind of contact between groundwater in margin and lakes of southeast desert. 5. Contrasting with isotope results of groundwater in other arid area, it show that the groundwater in the desert and Yabulai area should be phreatic water which have a low water table. Therefore, we conclude that the groundwater in southeast part of the desert and southern margin mainly are recharged by precipitation of local abundant rainfall and groundwater of low mountain of southern area. 6. And all of these evidences, which are different from salinity, the content of CO32- and geological data, show that the bigger northern lake group and southeastern lake group in the desert have different groundwater replenishing system because a fold belt lie between of the two group lakes and obstruct them in landform. and HCO3- 7. The 14C dating results of fossil and lacustrine deposits show that there maybe have a wider range of shoreline during early and middle Holocene than today. 8. By the discovery and study of some pieces of pottery and fine stoneware, we preliminary conclude that there maybe have some certain amount of early human activities in the Badain Jaran Desert.

甘肃临夏盆地龙担剖面晚新生代磁性地层与古环境

Linxia Basin, situated in the northeast belt of the Tibetan Plateau, is a late Cenozoic depression basin bounded by the Tibetan Plateau and the Chinese Loess Plateau. The Cenozoic deposition, spanning over 30Ma, in which very abundant mammal fossils were discovered, is very suitable for study of uplift processes and geo-morphological evolution of the Tibetan Plateau. The Longdan section (35°31′31.6″N，103°29′0.6″E) is famous for the middle Miocene Platybelodon fauna and the late Miocene Hipparion fauna for a long time and is also one of the earliest known places for wooly rhino, which lies on the east slope of Longdan, a small village of township Nalesi in the south of the Dongxiang Autonomous County, Linxia Hui Nationallity Autonomous Prefecture. The Longdan mammal fauna was discovered at the base of the Early Pleistocene loess deposits at Dongxiang, where the lithology is different from the typical Wucheng Loess on the Chinese Loess Plateau. The rich fossils contain many new species and the major two layers of fossils are in the loess beds. Geologically the fossiliferous area is located in the central part of the Linxia Cenozoic sedimentary basin. Tectonically the Linxia Basin is an intermountain fault basin, bordered by the Leijishan major fault in the south and the north Qinling and Qilianshan major faults in the north. The section is 51.6m thick above the gravel layer, including the 1.6m Late Pleistocene Malan Loess on the top and the other loess-paleosol sequences in the middle of the section. The base of the section is the Jishi Formation, consisting of gravel layer of 13 ~ 17m thick. In this study, 972 bulk samples were collected with an interval of 5cm and other 401 orientied samples were taken with a magnetic compass. In the laboratory, the paleomagnetism, medium grain size, susceptibility, color, micromorphology, anisotropy of magnetic susceptibility were analyzed. From the stratigraphic analysis, the Longdan section from the top 0.3m to the bottom 51.6m, containing 5 normal polarities (N1-N5) and 5 reversal polarities (R1-R5). The paleomagnetic results show N3 is the Olduvai subchron in the middle of the Matuyama chron, and then the chronology of the Longdan mammal fauna is constructed along the section. The Matuyama-Gauss boundary is 45m and N5 enters Gauss chron. The Olduvai subchron with the age of 1.77 ~ 1.95Ma is found just in the upper fossiliferous level of Longdan mammal fauna. Taking the deposit rate of the section into account, the geological age of the upper fossiliferous level of Longdan mammal fauna is estimated to be about 1.9Ma. The lower fossiliferous level is just below the Reunion subchron and its age is estimated to be 2.25Ma. In addition, anisotropy of magnetic susceptibility of the loess-paleosol and other climatic indexes were used for discussing the late Cenozoic paleoenvironmental changes at Longdan, from which the Longdan area should have been an area of predominantly steppe the same as the Longdan mammal fauna.

陆生蜗牛壳体同位素组成及其对生长季节的响应

Stable isotope compositions of land snail shells have a great potential as an indicator of paleoclimatic and paleoenvironmental changes. However, some key issues, such as the relationship of carbon isotope between snail food and local vegetation, and the uncertainty of the dominant factors about snail body fluid changes in oxygen isotope composition, remain less well known, strongly limiting shell isotopic application. In this study, we measure the stable isotope compositions on the shells of both live snails and fossils collected from the Chinese Loess Plateau and a loess sequence at Mangshan, Xingyang, respectively. Based on the analyses, the association of the stable isotope compositions of land snail shells with their growing seasons is investigated. In addition, the climatic and environmental significances of isotopic differences among several snail species are discussed. The main results and conclusions are presented as follows: 1. δ18O values for the shell lip samples of Bradybaena ravida redfieldi range from -6.79‰ to -1.92‰, and parallels to the monthly changes of local rain water δ18O, temperature and humidity. The compatibility of shell lip δ18O with monthly modeled shell δ18O indicates that the shell lip δ18O changes are mainly resulted from the 18O variations of rain-water. The shells of a land snail growing in spring could be enriched in 18O, and those growing in summer depleted in 18O. 2. Carbon isotope compositions of snail shells are controlled by their diet, which is affected by the relative proportion of C3 to C4. There are some differences in carbon isotopic compositions among different snail species, especially between P. orphana and V. tenera or P. aeoli. Shell δ13C for P. orphana is the most positive with an average of -5.88 ± 2.54 ‰. The C4 plant fraction of the food for “cold-aridiphilous” taxa, P. aeoli and V. tenera, is distinctly lower than that for “thermo-humidiphilous” taxa, P. orphana, indicating that summer is likely to be the main active season of P. orphana and spring of P. aeoli and V. tenera. Therefore, some discrepancy of carbon isotopic compositions among different species may be related to snail active season. 3. δ13C values among different species have a certain degree of positive correlation, which may be influenced by local vegetation ecosystem. δ13C value of the snail shells (especially P. orphana) shows an eastward increasing trend and consists with the variations of C4 plants biomass in Loess Plateau. The result shows that the carbon isotope in local vegetation ecosystem is one of the main factors influencing δ13C values of snail food. Therefore, both carbon isotopes of local vegetation ecosystem and snail active season contribute to the carbon isotopic differences among different snail species and in different areas. 4. δ13C values of living snail shells and soil organic matter have a positive correlation with each other, which further supports the view that carbon isotope in local vegetation ecosystem is one of the main factors influencing δ13C values of snail food. However, the range of δ13C values of snail food for various species in response to carbon isotope in local vegetation ecosystem is different. It is suggested that 13C enrichment of snail shells relative to local vegetation ecosystem has a potential to indicate snail active season and the degree of climate temperature and humidity. 5. There is a significant negative correlation between carbon and oxygen isotopic compositions of living snail shells in Loess Plateau. This result further supports that snail active season can be inferred based on the shell carbon and oxygen isotopic compositions. Moreover, there are some positive correlations between mean annual temperature and differences of shell δ13C values ( 13CV. tenera-P. orphana) and that of δ18O values ( 18OV. tenera-P. orphana) for P. orphana, a typical “thermo-humidiphilous” taxa, and V. tenera, a typical “cold-aridiphilous” taxa, respectively. It shows that  13CV. tenera-P. orphana and  18OV. tenera-P. orphana may have a potential to indicate mean annual temperature or the length of biological growing season. 6. Stable isotopes of land snail shell in the Mangshan loess sequence show that the shell δ18O value of “cold-aridiphilous” taxa V. tenera is more positive than “thermo-humidiphilous” taxa P. orphana and δ13C value of the former is more negative than the latter. In addition, the shell δ18O value of V. tenera varies significantly in different period. During the last glacial maximum, its δ18O value with an average of -7.89 ‰ is more negative than that (-5.88 ‰) from the last deglaciation to the early Holocene. This phenomenon indicates that its growing season during different period is significantly different. It tends to grow in summer in last glacial maximum. With climate warming, it prefers growing in spring with relatively low temperature. While the shell δ18O value of P. orphana varies in a little range, which shows that its activity season is shorter and mainly in summer. These results further support that the change of the snail growing season is one of the main factors of differences of carbon isotopic compositions among different snail species and varies with time. Furthermore, it is consistent that changes in magnetic susceptibility and trend of differences of shell δ18O values and δ13C values respectively between the two snail fossils. It is further testified that 13CV. tenera-P. orphana and  18OV. tenera-P. orphana may have a potential to indicate mean annual temperature or the length of biological growing season.