Mapping chromosomal homologies between humans and two langurs (Semnopithecus francoisi and S-Phayrei) by chromosome painting

Chromosomal homologies were established between human and two Chinese langurs (Semnopithecus francoisi, 2n=44, and S. phayrei, 2n=44) by chromosome painting with chromosome-specific DNA probes of all human chromosomes except the Y. Both langur species showed identical hybridization patterns in addition to similar G-banding patterns. In total, 23 human chromosome-specific probes detected 30 homologous chromosome segments in a haploid langur genome. Except for human chromosomes 1, 2, 6, 16 and 19 probes, which each gave signals on two non-homologous langur chromosomes respectively, all other probes each hybridized to a single chromosome. The results indicate a high degree of conservation of chromosomal synteny between human and these two Chinese langurs. The human chromosome 2 probe painted the entire euchromatic regions of langur chromosomes 14 and 19. Human chromosome 1 probe hybridized to three regions on langur autosomes, one region on langur chromosome 4 and two regions on langur chromosome 5. Human 19 probe hybridized on the same pattern to one region on chromosome 4 and to two regions on langur chromosome 5, where it alternated with the human chromosome 1 probe. Human 6 and 16 probes both hybridized to one region on each of the two langur autosomes 15 and 18. Only two langur chromosomes (12 and 21) were each labelled by probes specific for two whole human chromosomes (14 and 15 and 21 and 22 respectively). Comparison of the hybridization patterns of human painting probes on these two langurs with the data on other Old World primates suggests that reciprocal and Robertsonian translocations as will as inversions could have occurred since the divergance of human and the langurs from a common ancestor. This comparison also indicates that Asian colobines are karyotypically more closely related to each other that to African colobines.

Karyotypic relationships of horses and zebras: results of cross-species chromosome painting

Complete sets of chromosome-specific painting probes, derived from flow-sorted chromosomes of human (HSA), Equus caballus (ECA) and Equus burchelli (EBU) were used to delineate conserved chromosomal segments between human and Equits burchelli, and among four equid species, E. przewalskii (EPR), E. caballus, E. burchelli and E. zebra hartmannae (EZH) by cross-species chromosome painting. Genome-wide comparative maps between these species have been established. Twenty-two human autosomal probes revealed 48 conserved segments in E. burchelli. The adjacent segment combinations HSA3/21, 7/16p, 16q/19q, 14/15, 12/22 and 4/8, presumed ancestral syntenies for all eutherian mammals, were also found conserved in E. burchelli. The comparative maps of equids allow for the unequivocal characterization of chromosomal rearrangements that differentiate the karyotypes of these equid species. The karyotypes of E. przewalskii and E. caballus differ by one Robertsonian translocation (ECA5 = EPR23 + EPR24); numerous Robertsonian translocations and tandem fusions and several inversions account for the karyotypic differences between the horses and zebras. Our results shed new light on the karyotypic evolution of Equidae. Copyright (C) 2003 S. Karger AG, Basel.

Cross-species chromosome painting in the golden mole and elephant-shrew: support for the mammalian clades Afrotheria and Afroinsectiphillia but not Afroinsectivora

Cross-species painting (fluorescence in situ hybridization) with 23 human (Homo sapiens (HSA)) chromosome-specific painting probes (HSA 1-22 and the X) was used to delimit regions of homology on the chromosomes of the golden mole (Ghrysochloris asiaticus) and elephant-shrew (Elephantulus rupestris). A cladistic interpretation of our data provides evidence of two unique associations, HSA 1/19p and 5/21/3, that support Afrotheria. The recognition of HSA 5/3/21 expands on the 3/21 synteny originally designated as an ancestral state for all eutherians. We have identified one adjacent segment combination (HSA2/8p/4) that is supportive of Afroinsectiphillia (aardvark, golden mole, elephant-shrew). Two segmental combinations (HSA 10q/17 and HSA 3/20) unite the aardvark and elephant-shrews as sister taxa. The finding that segmental syntenies in evolutionarily distant taxa can improve phylogenetic resolution suggests that they may be useful for testing sequence-based phylogenies of the early eutherian mammals. They may even suggest clades that sequence trees are not recovering with any consistency and thus encourage the search for additional rare genomic changes among afrotheres.

Y-chromosome haplotype distribution in Han Chinese populations and modern human origin in East Asians

We investigated the distribution of Y-chromosome haplotype using 19 Y-SNPs in Han Chinese populations from 22 provinces of China. Our data indicate distinctive patterns of Y chromosome between southern and northern Han Chinese populations. The southern po

Construction and characterization of a bacterial artificial chromosome library of marine macroalga Porphyra yezoensis (Rhodophyta)

A large-DNA-fragment library is necessary for research into the Porphyra genome. In this study, a bacterial artificial chromosome (BAC) library of Porphyra yezoensis was constructed and characterized. The library contains 54,144 BAC clones with an average insert size of about 65 kb and fewer than 0.7% of clones without large inserts. Therefore, its capacity is more than 6.6 P. yezoensis genome equivalents, and the probability of recovering any nuclear DNA sequence from the library is higher than 99%. The library shows good fidelity and stability. A putative trehalose-6-phosphate synthase (TPS) gene was successfully screened out from the library. The above results show that the library is useful for gene cloning and genomic research in P. yezoensis.

太阳活动22周峰年日地系统整体行为研究计划

<正> 在1985年,中国科学院计划局成立天文、空间科学和地球科学综合发展战略研究组。经过一年多的工作,该组的专家们提出进行日地系统整体行为研究的建议,该建议得到了太阳物理、空间物理及地球科学领域广大科技工作者的支持,中科院机关的许多管理专家也表示赞成。中科院院长周光召教授建议加强在太阳峰年期间的跨学科相关研究。太阳活动22周日地系统整体行为研究被列为中国科学院“七•五”重点项目之一,

Experimental study of nonlinear switching characteristics of conventional 2×2 fused tapered couplers

The nonlinear switching characteristics of fused fiber directional couplers were studied experimentally. By using femtosecond laser pulses with pulse width of 100 fs and wavelength of about 1550 nm from a system of Ti:sapphire laser and optical parametric amplifier (OPA), the nonlinear switching properties of a null coupler and a 100% coupler were measured. The experimental results were coincident with the simulations based on nonlinear propagation equations in fiber by using super-mode theory. Nonlinear loss in fiber was also measured to get the injected power at the coupler. After deducting the nonlinear loss and input efficiency, the nonlinear switching critical peak powers for a 100% and a null fused couplers were calculated to be 9410 and 9440 W, respectively. The nonlinear loss parameter P_(N) in an expression of α_(NL)=αP/P_(N) was obtained to be P_(N)=0.23 W.

横断山区的翠雀属植物:分类学和细胞学

翠雀属Delphinium L.是毛茛科中的一个大属，全世界有300－400 余种，广布于北半球温带地区。我国是世界上记载翠雀属植物种类最多的国家，尤以西南横断山区种类最为丰富。 通过文献查阅、标本室研究和野外考察，本文对我国特别是横断山区翠雀属植物的主要形态性状在居群间和居群内的变异式样进行了初步分析，认为根的形态、叶的分裂程度、植株尤其是花序轴和花梗被毛与否以及毛被类型、小苞片的形状和位置、退化雄蕊的颜色、上萼片的形状、心皮数目和种子形态特征是比较可靠的分类性状。但性状之间的相关性往往较小，即使是通常比较稳定的分类性状有时也表现出不同程度的变异，因此同一性状对于不同等级分类群的划分和在不同分类群中的分类价值常不一样。在具体的分类处理中，应具体情况具体分析，尽可能利用较多的分类学性状或性状组合。 根据上述对我国翠雀属植物主要形态性状变异式样的理解，本文主要对我国西南横断山区及其邻近一些地区的翠雀属植物进行了力所能及的分类修订：将42 种和22 变种降为异名，提出2 新组合(毛梗黑水翠雀D. potaninii var. mollipes　(W. T. Wang) Q. Yuan & Q. E. Yang 和腺毛康定翠雀D. tatsienense var. pseudomosoynense (W. T. Wang) Q. E. Yang & Q. Yuan)，澄清了直距翠雀D. tenii Lévl. 的名实问题和Munz 等学者对我国翠雀属植物标本的鉴定错误以及由此引起的我国有关翠雀属植物的地理分布的混乱; 另有两种( 硕片翠雀D. grandilimbum W. T. Wang & M. J. Warnock 和永宁翠雀D. yongningense W. T. Wang & M. J. Warnock)因未见到模式标本，故暂存疑。本文讨论到的我国翠雀属植物共有87 种、10 变种。 为了在染色体水平上了解横断山区翠雀属植物的物种形成和分化，同时增加对整个翠雀族tribe Delphineae Warming 植物染色体进化的理解，本文报道了我国主要采自该地区的乌头属Aconitum L. 30 种、1 变种共40 个居群和翠雀属 48 种、3 变种共87 个居群的染色体数目，分析了30 种、1 变种乌头属植物和 46 种、3 变种翠雀属植物的核型，发现46 种、3 变种翠雀属植物为二倍体(2n = 2x=16)，1 种(黄毛翠雀D. chrysotrichum Finet & Gagnep.)为四倍体(2n = 4x =32)，1种(螺距翠雀D. spirocentrum Hand.-Mazz.)有二倍体和四倍体两种细胞型，3 种(宽距翠雀D. beesianum W. W. Smith、裂瓣翠雀D. mosoynense Franch.和康定翠雀 D. tatsienense Franch.)的个别居群有B 染色体出现。这表明横断山区翠雀属植物的物种形成主要在二倍体水平上进行。可能由于核型直向选择（karyotypic orthoselection）的结果，我国翠雀属植物的核型就整体情况而言在属内相当一致，属内核型分化不如乌头属中明显，外部形态上显得最为原始的种类如短距翠雀 D. forrestii Diels 和毛翠雀D. trichophorum Franch.的核型与其他多年生种类的核型相比并无明显区别。尽管如此，翠雀属植物的核型在属内仍表现出一定程度的分化：在多年生种类中，大理翠雀群(D. taliense group)的种类的染色体内部不对称性(intrachromosomal asymmetry) 程度较高, 但染色体之间的不对称性 (interchromosomal asymmetry)程度偏低;一年生种类与多年生种类相比，我国唯一的一年生种还亮草D. anthriscifolium Hance 染色体之间不对称性最高，该种染色体内部不对称性程度在翠雀族中也偏高，因此就其核型的整体不对称性程度而言，在翠雀属乃至整个翠雀族中最高，而地中海分布的一年生种类的染色体内部不对称性明显增强, 但染色体之间的不对称性在翠雀族中最低。这种核型分化的系统学和生物地理学意义尚不清楚，以后需进一步研究。与乌头属相比，翠雀属植物的染色体通常较小，核型中st 染色体明显增多（可达6 对），核型的整体不对称性程度逐渐增强; 虽然乌头属牛扁亚属Aconitum subgen. Lycoctonum (DC.) Peterm.的二倍体种类也一般具有较多的st 染色体（4 对），但这些st 染色体比乌头亚属Aconitum L. subgen. Aconitum和露蕊乌头亚属Aconitum subgen. Gymnaconitum (Stapf) Rapaics 植物核型中相对应的m 或 sm 染色体以及翠雀属和飞燕草属Consolida (DC.) S. F. Gray 植物中相对应的st 或偶尔出现的sm 染色体要大。特别应当注意的是牛扁亚属中外部形态上显得最为原始的展喙乌头A. novoluridum Munz 的核型具有较多而且较大的sm 染色体，所以我们认为展喙乌头的核型保留了较多的原始性质，那些核型中具有较多st 染色体的牛扁亚属植物应当是该亚属中在核型上已比较特化的种类。这一结果不支持前人提出的乌头属植物的核型有从st 染色体进化到m 或sm 染色体的趋势的观点。就整个翠雀族而言，从现有资料看，其核型的进化趋势应当为：(1) 染色体从大进化到小, 从m 或sm 染色体进化到st 染色体;(2) 核型的整体不对称性程度逐渐增强，即核型的二型性从多年生的牛扁亚属植物到翠雀属植物的一年生的还亮草亚属Delphinium subgen. Delphinium 而愈趋明显。翠雀族植物核型的进化方向与整个毛茛科核型的进化方向看来是一致的，即都向核型不对称性增强的方向进化。

芍药属两物种染色体结构变异杂合性研究

芍药属由大约35个灌木和多年生草本种组成，分为三个组：牡丹组(Sect. Moutan)、北美芍药组(Sect. Onaepia)和芍药组(Sect. Paeonia)。四川牡丹(Paeonia decomposita Handel-Mazzetti)和块根芍药(P. intermedia Meyer)分别隶属于牡丹组和芍药组。在该属的所有种中，染色体基数均为 x = 5，最短的五号染色体是端部着丝粒染色体，很容易辨认。 本论文研究了块根芍药三个居群22个个体和四川牡丹两个居群13个个体的减数分裂。减数分裂异常广泛发生，以至于发现所有被研究的个体都有数量不等的桥、断片和单价体。结果表明在中期I，块根芍药第一个居群平均每个小孢子母细胞有2.17个棒状二价体和2.7个环形二价体，第二个居群平均每个细胞有2.04个棒状二价体和2.86个环形二价体，第三个居群平均每个细胞有2.21个棒状二价体和2.71个环形二价体。而在四川牡丹中，第一个居群平均每个小孢子母细胞有2.09个棒状二价体和2.81个环形二价体，第二个居群平均每个细胞有1.85个棒状二价体和3.08个环形二价体。 块根芍药第一个居群的平均减数分裂染色体构型是2n = 10 = 0.25 I + 4.87 II，第二个居群是2n = 10 = 0.20 I + 4.90 II，第三个居群是2n = 10 = 0.17 I + 4.92 II，在该种的平均构型是2n = 10 = 0.21 I + 4.89 II。四川牡丹第一个居群的平均减数分裂染色体构型是2n = 10 = 0.21 I + 4.90 II，第二个居群是2n = 10 = 0.14 I + 4.93 II，在该种的平均构型是2n = 10 = 0.20 I + 4.90 II。在块根芍药中，不同个体的配对系数变化范围在69.5%和81.07%之间，在四川牡丹中在72.97%和81.37%之间。 在后期I和末期I，出现了染色体桥、断片、落后染色体、不等分离等异常现象。最明显的减数分裂异常是后期I桥/断片。尽管在不同的居群中桥/断片异常出现的频率有所变化(块根芍药居群一是26.03%，居群二是11.67%，居群三是13.39%;四川牡丹居群一是7.59%，居群二是9%)，但是这种异常出现在所有个体中(块根芍药平均为18.67%，四川牡丹平均为7.69%)。结果表明，所有的个体都是染色体臂内倒位结构杂合体，广泛存在于野生自然居群中，可能存在某些选择优势。而且，桥的出现频率和断片的大小在个体之间是变化的，这因此表明在这两个种中存在不同的倒位。然而，这两个种在野生居群中是如何维持染色体结构杂合的，其维持机制还有待于进一步阐明，还需要更进一步的证据。 该研究还揭示了块根芍药和四川牡丹这两个种具有共同的第五号染色体减数分裂异常：与长臂相比，短臂在遗传距离和物理距离之间存在巨大的背离。短臂的遗传距离，通过交叉频率计算出来，约是长臂的三十分之一（块根芍药）。然而，物理距离用臂的比率表示，大约是长臂的三分之一，物理距离是遗传距离的十倍。 在四川牡丹红心桥居群和其它居群之间，臂比存在微小的差异，而且在芍药属不同的种内也发现了存在差异。在四川牡丹中，环形二价体(两个臂形成交叉)和棒状二价体(仅一个臂形成交叉)的比率是1.94 : 98.06，而在块根芍药中是3.42 : 96.58。在这两个种中，棒状二价体大大多于环形二价体。在第五号染色体的短臂上可能存在某些“搭车效应”，这表明第五号染色体的短臂上存在高度永久杂合，导致短臂高度保守、极为稳定。这与芍药属古老的分布格局、进化历史长可能存在某些联系。四川牡丹第五号染色体的后期I倒位桥出现频率非常低，仅为0.51 - 3.47%，平均为1.43%。而且断片长度是变化的，其变化范围在1.7 - 10.8 µm之间。

The Homology and Relationship of Human (Homo sapiens) Chromosomes 1, 19 and Dusky Langur (Trachypithacus obscurus) Chromosomes 6, 8 Demonstrated with Chromosome Painting

http://www.jstage.jst.go.jp/