Variation patterns of the mitochondrial 16S rRNA gene with secondary structure constraints and their application to phylogeny of cyprinine fishes (Teleostei : Cypriniformes)

The mitochondrial 16S ribosomal RNA (rRNA) gene sequences from 93 cyprinid fishes were examined to reconstruct the phylogenetic relationships within the diverse and economically important subfamily Cyprininae. Within the subfamily a biased nucleotide composition (A > T, C > G) was observed in the loop regions of the gene, and in stem regions apparent selective pressures of base pairing showed a bias in favor of G over C and T over A. The bias may be associated with transition-transversion bias. Rates of nucleotide substitution were lower in stems than in loops. Analysis of compensatory substitutions across these taxa demonstrates 68% covariation in the gene and a logical weighting factor to account for dependence in mutations for phylogenetic inference should be 0.66. Comparisons of varied stem-loop weighting schemes indicate that the down-weightings for stem regions could improve the phylogenetic analysis and the degree of non-independence of stem substitutions was not as important as expected. Bayesian inference under four models of nucleotide substitution indicated that likelihood-based phylogenetic analyses were more effective in improving the phylogenetic performance than was weighted parsimony analysis. In Bayesian analyses, the resolution of phylogenies under the 16-state models for paired regions, incorporating GTR + G + I models for unpaired regions was better than those under other models. The subfamily Cyprininae was resolved as a monophyletic group, as well as tribe Labein and several genera. However, the monophyly of the currently recognized tribes, such as Schizothoracin, Barbin, Cyprinion + Onychostoma lineages, and some genera was rejected. Furthermore, comparisons of the parsimony and Bayesian analyses and results of variable length bootstrap analysis indicates that the mitochondrial 16S rRNA gene should contain important character variation to recover well-supported phylogeny of cyprinid taxa whose divergences occurred within the recent 8 MY, but could not provide resolution power for deep phylogenies spanning 10-19 MYA. (c) 2008 Published by Elsevier Inc.

Effect of buffer layer growth conditions on the secondary hexagonal phase content in cubic GaN films on GaAs(001) substrates

In this letter, we investigated the effect of the buffer layer growth conditions on the secondary hexagonal phase content in cubic GaN films on GaAs(0 0 1) substrate. The reflection high-energy electron diffraction (RHEED) pattern of the low-temperature GaN buffer layers shows that both the deposition temperature and time are important in obtaining a smooth surface. Four-circle X-ray double-crystal diffraction (XRDCD) reciprocal space mapping was used to study the hexagonal phase inclusions in the cubic GaN (c-GaN) films grown on the buffer layers. The calculation of the volume contents of the hexagonal phase shows that higher temperature and longer time deposition of the buffer layer is not preferable for growing pure c-GaN film. Under optimized condition, 47 meV FWHM of near band gap emission of the c-GaN film was achieved. (C) 2000 Elsevier Science B.V. All rights reserved.

黄土高原子午岭林区6个典型群落优势种的热值和养分特征

能量流动、物质循环和信息传递共同构成了生态系统三大功能。能量是维持生态系统功能与过程的动力,Jordan(1971)认为能量比干物质更能反映出群落对自然资源(特别是太阳能)的利用情况。Long(1934)率先用热值来表示植物所含能量的多少,此后关于植物热值的研究工作逐渐展开。我国的植物热值研究始于20世纪80年代(杨福囤等,1983;祖元刚等,1986),主要集中在海南(林益明等,2000)、福建(林益明等,2004)、广东(任海等,1999)和浙江(郝朝运等,2006)等热带亚热带植物群落以及内蒙古羊草草原(鲍雅静等,2003),但有关黄土高原地区的植被热值研究尚未见报道。子午岭林区是黄土高原主要的天然次生林区,其植被主要是在弃耕地基础上逐渐恢复起来的(邹厚远等,2002)。由于自然因素与人为因素的影响,子午岭的植被在恢复时间上存在较大差异,形成了处于不同演替阶段的各种植被群落类型。本研究选取的6个代表性植被群落分别是沙棘(Hippophae rhamnoides)群落、山杨(Populus davidiana)群落、白桦(Betula platyphylla)群落、油松(Pinus tabulaeform...

子午岭植被恢复对土壤饱和导水率的影响

通过对子午岭林区不同植被的土壤性质进行实验室测定和野外调查,对饱和土壤水分运动的重要参数之一土壤饱和导水率(Ks)及其相关因子进行了多元分析和通径分析,揭示了植被恢复提高土壤水分传输性能的机理,主要结论如下:土壤有机质是子午岭林区九种植被下土壤饱和导水率提高的主要驱动因子。不同植被下的土壤饱和导水率均随深度的增加而迅速降低,尽管草地和先锋草地在5～10cm深度有一强透水层。土壤饱和导水率在剖面上的平均值,从辽东栎、早期森林、灌丛、先锋草地、弃耕地到草地依次降低。灌丛与草地、弃耕地的差异达到显著水平,辽东栎顶级群落的饱和导水率最高,植被的恢复明显提高了土壤饱和导水率。土壤容重、毛管孔隙度、>0.25mm团聚体含量及粘粒含量直接影响土壤饱和导水率。土壤有机质含量的提高能够改善容重、毛管孔隙度、团聚体含量等物理性质。

黄土丘陵区油松天然次生林林窗特征与更新动态

研究了黄土丘陵区油松天然次生林林窗的形状、大小结构、分布、形成木特征及其更新状况.结果表明:在油松天然次生林中,林冠林窗(CG)和扩展林窗(EG)面积均呈以小林窗为主的偏态分布.CG平均面积为31.15 m2,以20~40 m2林窗的数量比和面积比最大,分别为38.24%和30.50%;EG平均面积为58.04 m2,以30~60 m2的数量比和面积比最大,分别为36.77%和27.79%,且CG的平均面积占EG平均面积的53.67%;林窗形状多呈椭圆形,高度多在14~16 m;林窗形成年龄以10~20年为主,占33.82%.林窗中基折和枯立木分别占形成木总数的47.66%和23.44%.林窗形成的主要因素是人为间伐或盗伐,树木衰老等引起的抗性下降、干旱、病虫害等也是导致树木死亡的原因之一;每个林窗中平均有1.89个形成木,其中以2株形成木的林窗最多.林窗形成木主要是油松,其次为山杨、白桦和辽东栎等.形成木的径级呈明显的偏态分布,以10~20 cm和21~30 cm径级最为普遍,分别占总数的25.0%和45.31%,与林窗面积偏态分布吻合;林窗内林木的更新状况好于林下,且油松幼苗不存在断层,而油松林下幼苗在年...