An Amino Acid Substitution Matrix for Protein Conformation Identification

Amino acid substitution matrices play an essential role in protein sequence alignment, a fundamental task in bioinformatics. Most widely used matrices, such as PAM matrices derived from homologous sequences and BLOSUM matrices derived from aligned segments of PROSITE, did not integrate conformation information in their construction. There are a few structure-based matrices, which are derived from limited data of structure alignment. Using databases PDB_SELECT and DSSP, we create a database of sequence-conformation blocks which explicitly represent sequence-structure relationship. Members in a block are identical in conformation and are highly similar in sequence. From this block database, we derive a conformation-specific amino acid substitution matrix CBSM60. The matrix shows an improved performance in conformational segment search and homolog detection.

Liquid phase epitaxy growth of AlxGayIn1-x-yPzAs1-zGaAs with direct band gap up to 2.0 eV

III-V pentenary semiconductor AlGaInPAs with a direct band gap of up to 2.0 eV has been grown successfully on GaAs substrates by liquid phase epitaxy;(LPE). With the introduction of the energy bowing parameters of quaternaries, the theoretical calculations agree well with the measured PL peak energy data from pentenary samples.

Micro-Fracture Toughness in a Nanoceramic Composite

Micro-fracture toughness in one nanoceramic composite, Al_2O_3/SiC_{nano}, is measured by Nanoindentation tests. Microscopy is adopted to probe that all nanoindentations are local at Al_2O_3, matrix component of the current composite and measure length of radial micro-cracks at corriers of nanoindentation. The measured fracture toughness at the shallow indentation is higher than those at deeper ones. Relations between micro-toughness and peak loads as well as peak depths are discussed. And an analysis to the energy consumed during the indentation and fracture toughness explained that, the lower fracture toughness measured in the deeper impression probably resulted from its fracture modes yielded by higher load and larger depth.

Effects of Graphitization on the Synthesis of Ultrafine Diamond by Explosive Detonation

金刚石的石墨化对于炸药爆轰过程中金刚石的产出率有重要的影响。对碳相图进行了讨论,提出采用金刚石2石墨的动力学平衡线来评价炸药爆轰过程中金刚石的石墨化。通过数值模拟,对炸药爆轰过程中金刚石的石墨化进行了分析和讨论。

Visualization of dust explosion under microgravity conditions

The objective of this work was to apply visualization methods to the experimental study of cornstarch dust-air mixture combustion in a closed vessel volume under microgravity conditions. A dispersion system with a small scale of turbulence was used in the experiments. A gas igniter initiated combustion of the dust-air mixture in the central or top part of the vessel. Flame propagation through the quiescent mixture was recorded by a high-speed video camera. Experiments showed a very irregular flame front and irregular distribution of the regions with local reactions of re-burning behind the flame front. at a later stage of combustion. Heat transfer from the hot combustion products to the walls is shown to have an important role in the combustion development. The maximum pressure and maximum rate of pressure rise were higher for flame propagation from the vessel center than for flame developed from the top pan of the vessel. The reason for smaller increase of the rate of pressure rise, for the flame developed from the top of the vessel. in comparison with that developed from the vessel center, was much faster increase of the contact surface of the combustion gases with the vessel walls. It was found that in dust flames only small part of hear was released at the flame front, the remaining part being released far behind it.

Flow Stress of Biomorphous Metal-Matrix Composites

For metal-matrix composites (MMCs), interfacial debonding between the ductile matrix and the reinforcing hard inclusions is an important failure mode. A fundamental approach to improving the properties of MMCs is to optimize their microstructure to achieve maximum strength and toughness. Here, we investigate the flow stress of a MMC with a nanoscale microstructure similar to that of bone. Such a 'biomorphous' MMC would be made of staggered hard and slender nanoparticles embedded in a ductile matrix. We show that the large aspect ratio and the nanometer size of inclusions in the biomorphous MMC lead to significantly improved properties with increased tolerance of interfacial damage. In this case, the partially debonded inclusions continue to carry mechanical load transferred via longitudinal shearing of the matrix material between neighboring inclusions. The larger the inclusion aspect ratio, the larger is the flow stress and work hardening rate for the composite. Increasing the volume concentration of inclusion also makes the biomorphous MMC more tolerant of interfacial damage.

海底管线强度评估中的两个问题

海底管线是海上油气田生产设施的重要组成部分,它一旦发生破坏会在各方面引起重大损失.挖沟和提吊引起应力超标是海底管线两种重要的破坏形式.挖沟和提吊问题的难点是:1)二者都是动边界问题,悬空长度本身就是未知量;2)挖沟问题中应考虑台阶升高处土壤支持的弹性影响(这比刚性处理更准确,但这会使边界条件更复杂);3)提吊是一个几何非线性问题,求解难度较大.本文给出挖沟和提吊作业状态下,海底管线的强度分析方法.在挖沟分析中,采用线性梁理论,将台阶升高处的土壤支持处理为线性弹簧.在提吊问题中,将管线模型化为大位移梁,采用打靶法,将边值问题转变为初值问题求解.文中还给出有关的典型数值计算结果.

Microstructure and Magnetic Properties of Nd60Al10Fe20Co10 Glass-forming Alloy

The microstructural variations of the Nd60Al10Fe20CO10 melt-spun ribbons and the as-cast rod were studied by high resolution transmission electron microscopy (HRTEM), x-ray diffraction (XRD) and differential scanning calorimetry. Nano-clusters in glassy m

坡面细沟侵蚀的冲刷试验研究

细沟侵蚀是土壤侵蚀的重要方式之一，但定量研究困难很大。本文设计并完成了一系列小规模细沟侵蚀冲刷试验，研究细沟侵蚀过程中的动力学规律。试验结果表明了一些细沟侵蚀的趋势性规律，也反映出其中存在较强的随机性。通过分析试验数据，得到了细沟宽度及过水断面湿周与流量和坡度的经验关系，并发现湿周与它们的关系更为密切。

脉冲激光合金化形成含非晶相表层的微观组织

利用Nd:YAG脉冲激光在不锈钢表层合金化SiO_2纳米颗粒，在熔池最表层14μm深度范围内形成Si合金化区域，Si含量呈非均匀分布特征。表层为非晶相与奥氏体的双相组织，非昌相约不散分布并呈现特殊的环状形貌，中心为非晶，外侧为纳米尺度的超细柱晶及等轴晶。分析了非晶形成机制。

沙坡头人工植被区陆气耦合模式及生物结皮与植被演变的机理研究

论述了研究陆气相互作用的意义和现状。在以前工作基础上，针对腾格里沙漠人工植被区陆气水热传输过程，提出了一个多层陆气的耦合模式。特别给出了导水率的计算模型和修正后的根系吸水模式，考虑了结皮层对于土壤水分入渗的影响以及植被演变的过程。陆气耦合模式分别对大气、植被、土壤作用多层划分，以助于细致了解沿高度分布的各物理量。同时，介绍了当地气候根况和野外观测情况。利用本模式对中国科学院沙坡头沙漠站人工植被区陆气水热效换过程进行了数值模拟，模拟结果与实测值吻合较好，可为当地合理利用水热资源和治理沙漠提供科学依据。

Control of vortex shedding at moderate Reynolds numbers

The suppression method of vortex shedding from a circular cylinder has been studied experimentally in the Reynolds number range from 300 to 1600. The test is performed in a water channel. The model cylinder is 1 cm in diameter and 38 cm in length. A row of small rods of 0.18 cm in diameter and 1.5 cm in length are perpendicularly connected to the surface of the model cylinder and distributed along the meridian, The distance between the neighboring rods and the angle of attack of the rods can be changed so that the suppression effect on vortex shedding can be adjusted. The results show that vortex shedding can be suppressed effectively if the distance between the neighboring rods is smaller than 3 times and the cylinder diameter and the angle of attack is in the range of 30degreesless than or equal tobeta<90&DEG;.

Burst Detection in Turbulent Channel Flows Based on Large Eddy Simulation Databases

Reliable turbulent channel flow databases at several Reynolds numbers have been established by large eddy simulation (LES), with two of them validated by comparing with typical direct numerical simulation (DNS) results. Furthermore, the statistics, such as velocity profile, turbulent intensities and shear stress, were obtained as well as the temporal and spatial structure of turbulent bursts. Based on the LES databases available, the conditional sampling methods are used to detect the structures of burst events. A method to deterimine the grouping parameter from the probability distribution function (pdf) curve of the time separation between ejection events is proposed to avoid the errors in detected results. And thus, the dependence of average burst period on thresholds is considerably weakened. Meanwhile, the average burst-to-bed area ratios are detected. It is found that the Reynolds number exhibits little effect on the burst period and burst-to-bed area ratio.

Nd_(60)Al_(10)Fe_(20)Co_(10)金属玻璃的变形行为

利用材料测试系统(MTS)、X-Ray 衍射(XRD)和扫描电镜(SEM)等手段研究了Nd 基大块金属玻璃的变形行为和断裂特征。Nd 基大块金属玻璃样品在室温下是脆性断裂,大约在500 K 时变形模式从非均匀变形转变为均匀变形,在523 K 以上表现出显著的塑性变形。在5×10-4 m/s 的应变速率下,这种Nd 基大块金属玻璃材料在523 K~600 K 之间出现明显的屈服应力下降现象,随后进入1 种稳定的粘性流动状态,而且这种屈服下降现象与温度和应变速率有关。这种在过冷液相区的变形行为与其他大块金属玻璃变形特征相似。合金的这种塑性变形行为表明了其存在稳定的过冷液相区,同时对其变形行为的研究有助于进一步了解Nd 基大块金属玻璃的反常热稳定性。