Genomic cloning, expression and recombinant protein purification of alpha and beta subunits of the allophycocyanin gene (apc) from the cyanobacterium Anacystis nidulans UTEX 625

A genomic fragment encoding alpha(APC) and beta(APC) (i.e., alpha and beta units of the allophycocyanin, APC) from Anacystis nidulans UTEX 625 was cloned and sequenced. This fragment, containing a non-coding sequence of 56 nucleotides in between, was then subcloned into the expression vector pMal-c2 downstream from and in frame with the malE gene of E. coli encoding MBP ( maltose binding protein). The fusion protein was purified by amylose affinity chromatography and cleaved by coagulation factor Xa. alpha(APC) and beta(APC) were then separated from MBP and MBP fusion proteins, respectively, and concentrated by membrane centrifugation. The study provides a method to produce recombinant allophycocyanin subunits for biomedical and biotechnological applications.

Impact of spatial resolution and spatial difference accuracy on the performance of Arakawa A-D grids

This paper alms at illustrating the impact of spatial difference scheme and spatial resolution on the performance of Arakawa A-D grids in physical space. Linear shallow water equations are discretized and forecasted on Arakawa A-D grids for 120-minute using the ordinary second-order (M and fourth-order (C4) finite difference schemes with the grid spacing being 100 km, 10 km and I km, respectively. Then the forecasted results are compared with the exact solution, the result indicates that when the grid spacing is I kin, the inertial gravity wave can be simulated on any grid with the same results from C2 scheme or C4 scheme, namely the impact of variable configuration is neglectable; while the inertial gravity wave is simulated with lengthened grid spacing, the effects of different variable configurations are different. However, whether for C2 scheme or for C4 scheme, the RMS is minimal (maximal) on C (D) grid. At the same time it is also shown that when the difference accuracy increases from C2 scheme to C4 scheme, the resulted forecasts do not uniformly decrease, which is validated by the change of the group A velocity relative error from C2 scheme to C4 scheme. Therefore, the impact of the grid spacing is more important than that of the difference accuracy on the performance of Arakawa A-D grid.

胶州湾四种哲水蚤种群动态的研究

本文研究了胶州湾内1988年5月至1989年5月，小拟哲水蚤[Paracalanus parvus(Claus)]、双刺纺锤水蚤[Acartia bifilosa (Giesbrecht)]、太平洋纺锤水蚤(A. pacifica steuer)和1982年5月至1983年4月中华哲水蚤(Calanus sinicus Brodsky)的种群结构和种群数量的季节变化。双剌纺锤水蚤和太平纺锤水蚤在胶州湾是季节性出现的种类，它们能产生休眠卵，本文对其休眠卵数量的季节变化以及影响休眠卵产生和孵化的因素进行了初步的探讨。本文还研究了体长的季节变化以及温度和食物条件对体长的影响。

长江口北港和北支浮游动物群落生态学比较研究

浮游动物是河口生态系统的重要组成部分，在食物网中，浮游动物是浮游植物捕食者，对浮游植物有摄食压力，所以控制浮游植物数量的增长。同时，浮游动物还是鱼类的饵料，从而影响渔业资源的数量。长江口是各种经济鱼、虾和蟹的重要产卵场、索饵场和洄游场。长江口各个分汊的分流量的差异较大，导致不同分汊的水文环境明显不同，其中最为明显就是北港和北支水域。然而以往对浮游动物的研究仅限于某一水域，没有对整体水域进行研究，本文选择最具代表性的北港和北支水域，对两水域浮游动物的群落生态特征进行比较研究。 本论文的数据来源于2004年5、8、11月和2005年2月在长江口北港和北支水域4个航次的海洋综合调查资料。通过采用优势度和优势种贡献率等生态学指标，同时结合逐步回归分析，讨论了温、盐与浮游动物总丰度变化的关系。结果表明，就四季而言，浮游动物总丰度和盐度呈显著正相关，和温度负相关。而就单个季节而言，除了5月和2月落潮，总丰度和盐度均呈显著正相关，与温度相关关系不显著。调查水域优势种主要为河口半咸水种或近海种。北港的盐度约为0-5, 表现为长江淡水特征；北支的盐度约为12-28，表现为长江径流和外海水团混合水团的特征。上述优势种的盐度适应和水团分布特征决定了长江口浮游动物分布的时空变化，即盐度较高的水域往往有较高的丰度，北支的总丰度和生物量均大于北港。此外，在长江口口内水域，水温较低的枯水期，浮游动物丰度高于水温较高的丰水期，温度的季节波动，以及主要优势种中华华哲水蚤（Sinocalanus sinensis）对低温环境的适应，是调查水域浮游动物总丰度季节变化的重要因素。 另一方面，本论文通过物种多样性、累积优势度曲线等群落水平的指标和相似性检验分析（ANOSIM），对长江口北港和北支浮游动物群落及其主要优势种的差异，以及主要生态因子对浮游动物群落的影响进行了分析。结果表明，北港主要由潮汐影响的淡水和低盐水组成，北支由中、高盐水组成。春季，北港浮游动物丰度和多样性均低于北支，主要优势种为中华华哲水蚤；北支优势种种数较多，主要是真刺唇角水蚤（Labidocera euchaeta）。夏季，北港和北支的多样性较接近，但是种类组成差别较大，北港以中华华哲水蚤和太平洋纺锤水蚤（Acartia pacifica）为主构成河口半咸水群落，北支以由火腿许水蚤（Schmackeria poplesia）、虫肢歪水蚤（Tortanus vermiculus）和太平洋纺锤水蚤等构成河口低盐群落。秋季，北港的丰度和多样性均低于北支，两个水域的群落差异明显，北港主要由中华华哲水蚤构成，北支由小拟哲水蚤（Paracalanus parvus）、针刺拟哲水蚤（Paracalanus aculeatus）、真刺唇角水蚤和中华哲水蚤（Calanus sinicus）等近岸和外海种组成。冬季，两个水域种数和多样性均较低，群落差别达四季最小，中华华哲水蚤占绝对优势。温度和盐度及其相互作用是决定长江口浮游动物群落特征的最主要因素。其中温度是造成研究水域浮游动物群落季节变化的主要因素，而由径流和外海水之间的消长引起的盐度变化是造成北港和北支浮游动物群落区域变化的决定因素。

小型桡足类种群动力学研究

小型桡足类在生态系统中的重要作用近年来得到了广泛的关注，在近岸生态系统中，小型桡足类起着相当重要的作用。但关于小型桡足类种群动力学的研究在国内还处于起步阶段，因此我们选取了国内沿岸海域常见优势种小拟哲水蚤、双刺纺锤水蚤、太平洋纺锤水蚤及强额拟哲水蚤等四种小型桡足类为研究对象，探讨其种群动力学相关方面的变动机制。本文在2005年10月－2006年9月选取胶州湾为主要的研究海域，进行了一周年的小型桡足类的采样和培养实验研究。在胶州湾，小拟哲水蚤（Paracalanus parvus）全年出现，其种群数量变动呈现双峰型，在夏季（6月和8月）达数量高值，在冬季（1月）有一个小的高峰。种群数量在4月达全年最低值，在7月份数量也有一个明显的数量降低。从空间分布上来讲，该水蚤在冬季主要以CV期桡足幼体存在于湾南和湾外区域，湾北数量很少；从春末开始，各期幼体开始在各海区广泛分布。小拟哲水蚤在胶州湾几乎全年产卵（2月份除外），但较高的产卵率主要集中在春末到秋初，最大产卵率出现在5月，达27.9 eggs female-1d-1。总体来讲，在胶州湾小拟哲水蚤的产卵率与温度、叶绿素及体长均呈显著正相关，但与盐度呈负相关关系。从不同的区域来看，胶州湾湾北区域小拟哲水蚤产卵率较高，最高值出现在湾北6月份，产卵率达到了60.8 eggs female-1d-1。大于10 eggs female-1d-1的产卵率在湾北持续了6个月（4－9月），在湾口持续了5个月（4－8月），而在湾外只持续了3个月（5－7月）。小拟哲水蚤生物量在6月份达到最高值（6.15 mg C m-3），在4月达到全年最低值（0.028 mg C m-3）。次级生产的变动从4月到9月与生物量的变动趋势完全相似，但冬季生物量的高峰并没有伴随次级生产的高峰值，分析其原因是由于冬季低的生长率所致。小拟哲水蚤在整个胶州湾平均的年次级生产为158.41 mg C.m-3yr -1。强额拟哲水蚤（Paracalanus crassirostris）在胶州湾只在夏末到秋季出现，最大数量出现在8月份。从强额拟哲水蚤的分布区域来看，从湾内到湾外有递减趋势。在2006年9月份，只有湾北有部分种群，其他区域几乎没有该种出现。该种最大产卵率出现在8月，达11.2 eggs female-1d-1。强额拟哲水蚤生物量的变动与次级生产的变动趋势相似，最大值也都出现在8月份。该水蚤在胶州湾平均年次级生产仅为2.12 mg C m-3yr-1。双刺纺锤水蚤(Acartia bifilosa)在胶州湾是全年出现，其种群数量在5－6月份突发性增加达全年最高值（>8000 ind. m-3），之后又急剧下降。从该种的区域分布来看，5－6月份数量的高峰主要出现在湾北区域，7月份虽然各区域数量均下降，但大部分种群集中在湾外区域。双刺纺锤水蚤在胶州湾几乎全年产卵（1－2月除外），产卵率的最高值出现在4月，达16.5 eggs female-1d-1。4月份雌体高的产卵率为5月份种群数量的大量增加提供了补充。双刺纺锤水蚤生物量与次级生产的变动趋势一致，在5－6月份达到高值，在秋冬季次级生产较低。双刺纺锤水蚤在整个胶州湾平均的年次级生产为114.61 mg C m-3yr-1。太平洋纺锤水蚤（Acartia pacifica）在胶州湾季节性出现，在冬春季节消失，从夏季开始出现。该种在5月零星出现，种群数量在6月份开始增多，到7月份达到最高值2356 ind. m-3，之后在8月数量锐减至196 ind. m-3。从区域分布来看，该水蚤在胶州湾只出现在湾北和湾南区域，湾外区域几乎没有，而且呈现湾北到湾南递减的趋势。6月份数量大部分出现在湾北区域，到7月份才有一部份在湾南出现。太平洋纺锤水蚤在其出现季节均产卵，最大产卵率出现在6月份，达37.17 eggs female-1 d-1，部分补充了7月份太平洋纺锤水蚤种群数量的大量增加。太平洋纺锤水蚤生物量与次级生产的变动趋势相似，在7月份达到了最高值，在11月达到最低值。太平洋纺锤水蚤在胶州湾平均的年次级生产为45.63 mg C m-3yr-1。胶州湾四种小型桡足类总的年次级生产为~320 mg C m-3 yr-1。

玻璃海鞘多肽PCI的分离纯化及其抗血管生成活性研究

血管生成是肿瘤生长、发展的必经之路，并且与实体瘤的发生、转移有着密切的关系，抑制肿瘤新生血管生成具有特异性高、疗效好、不易产生耐药性以及毒副作用低等特点，因此抑制肿瘤血管形成可望成为治疗癌症的一个突破点，以抗血管生成为主的肿瘤生物治疗研究已成为近十年的研究热点。玻璃海鞘（Coina intestinalis）属于内性目、玻璃海鞘科，因其进化上的独特地位常作为研究神经发育、免疫系统进化的材料。在其它种属的海鞘中分离发现了多种具有抗肿瘤活性的多肽，但关于玻璃海鞘抗血管生成活性多肽的分离纯化和活性研究未见报道。本文利用多种分离纯化手段，采用活性追踪的方法首次从玻璃海鞘中分离得到具有抗新生血管生成作用的多肽，并对其抗血管生成活性做了初步研究。 本研究利用冷丙酮分级沉淀，超滤截留分子量小于5kDa的蛋白，再经SephadexG25、Superdex75柱层析，µRPC C2/C18反相柱层析等分离手段，采用活性追踪的方法，由玻璃海鞘（Coina intestinalis）中分离纯化出抗血管生成多肽PCI，据保留时间计算其分子量为1.8 kDa。MTT检测表明其对人脐静脉血管内皮细胞（HUVEC）具有强烈的抑制作用，IC50为7.5 μg/ml，并对多种肿瘤细胞有直接的抑制作用。斑马鱼胚胎体内实验进一步表明PCI在40 μg/ml的浓度下作用12h，斑马鱼胚胎新生血管生成受到显著抑制，肠下静脉血管长度为正常组的30%，斑马鱼胚胎血管生成率为正常组的45%。

Grazing impact of copepods on phytoplankton in the Bohai Sea

During spring (April/May 1999) and autumn (September/October 1998) cruises in the Bohai Sea, China, copepods were the dominant components of mesozooplankton, the most abundant species being Calanus sinicus, Centropages mcmurrichi, Paracalanus parvus, Acartia bifilosa and Oithona similis. Pigment ingestion rates by three size classes of copepods (200-500, 500-1000 and > 1000 mum) were measured. In the south of the investigation area, gut pigment content (GPC), individual pigment-specific ingestion rates and grazing impacts on phytoplankton were lower in spring than in autumn. In the central area, GPC and individual pigment-specific ingestion rates were higher in spring than in autumn. The grazing impact on phytoplankton by the copepod assemblages was lower in spring than in autumn, however, because of the relatively smaller biomass in spring. In the western area where the Bohai Sea joins the Yellow Sea, GPC, individual pigment-specific ingestion rates and grazing impacts on phytoplankton were higher in spring than in autumn. Among the three size groups, the small-sized animals (200-500 mum) contributed more than 50% (range 38-98%) of the total copepod grazing during both cruises. The grazing impact on phytoplankton by copepods was equivalent to 11.9% (range 3.0-37.1%) of the chlorophyll-a standing stock and 53.3% (range 21.4-91.4%) of the primary production during the spring cruise. Grazing impact was equivalent to 6.3% (range 2.0-11.6%) of the chlorophyll-a standing stock and >100% (range 25.7-141.6%) of the primary production during the autumn cruise. The copepod community apparently consumed only a modest proportion of the standing stock of phytoplankton during spring and autumn blooms. They did, however, sometimes graze a significant proportion of daily primary production and hence were presumably able to limit the rate of further accumulation of phytoplankton, or even to prevent it. (C) 2003 Elsevier Ltd. All rights reserved.

Diel vertical migration of zooplankton following optimal food intake under predation

A model is developed to investigate the trade-offs between benefits and costs involved in zooplanktonic diel vertical migration (DVM) strategies. The 'venturous revenue' (VR) is used as the criterion for optimal trade-offs. It is a function of environmental factors and the age of zooplankter. During vertical migration, animals are assumed to check instantaneously the variations of environmental parameters and thereby select the optimal behavioral strategy to maximize the value of VR, i.e. taking up as much food as possible with a certain risk of mortality. The model is run on a diel time scale (24 h) in four possible scenarios during the animal's life history. The results show that zooplankton can perform normal DVM balancing optimal food intake against predation risk, with the profile of DVM largely modified by the age of zooplankter.

Feeding activities of zooplankton in the Bohai Sea

The Bohai Sea was the site of the Chinese national GLOBEC programme. During the June 1997 cruises of R/V Science No.1, observations and experiments on zooplankton feeding were conducted. At five 48 h time-series stations the following observations and measurements on zooplankton were carried out: (1) diurnal vertical migration, by collecting samples at different layers every 3 h with a closing net; (2) diurnal feeding rhythms, by gut pigment analysis; and (3) ingestion rate, by both gut pigment analysis and the dilution method. A classification by body size was used to deal with the diversity of species and developmental stages of zooplankton assemblages. Samples were separated into three size groups: small (200-500 mu m), medium (500-1000 mu m) and large (> 1000 mu m). The results showed that the copepods (Calanus sinicus, Paracalanus parvus, Acartia bifilosa and Centropages mcmurrichi) performed clear diurnal vertical migrations. However, their behaviour was different at different stations. The variation in gut pigment content over the 24 h cycle showed strong diurnal feeding rhythms, particularly for the large size group. Gut pigment contents reached their daily maximum during the time from dusk to midnight (18:00-24:00). The peak value was about 10 times the minimum observed in the daytime. The in situ daily grazing rate, based on gut pigment contents and evacuation experiments, was 4.00-12.65 ng chla ind(-1) day(-1) for the small size group, 5.99-66.58 ng chla ind(-1) day(-1) for the medium size group and 31.31-237.13 ng chla ind(-1) day(-1) for the large size group. The copepods consumed only a small part (2.90-13.52%) of the phytoplankton biomass hut about 77% of the daily production. The grazing mortality rate of phytoplankton by microzooplankton (<200 mu m) measured by the dilution method ranged from 0.43 to 0.69 day(-1) The calculated daily consumption of phytoplankton biomass was 35-50%, and 85-319% of the potential production.

Investigation of Extration Method for Paralytic Shellfish Poisoning Toxins in Shellfish

Me optimal conditions were established for the extraction of paralytic shellfish poisoning toxins from gonad of Chlamys nobills using acetic acid and hydrochloric acid in the concentration range of 0.04-1.0 mol/L. A 10-g portion of gonad of Chlamys nobilis was extracted by boiling for 5 min with 1.0 mL acetic acid and hydrochloric acid in a 50-mL beaker. Meanwhile, a portion of gonad of Chlamys nobilis was extracted by sonication in the solution of 0.3 mol/L HAc + 0.2 mol/L HCl for a total period of 5-30 min. The raw extract was centrifuged at 3500 r/min for 5 min and the pH of supernatant was adjusted from 2.0 to 4.0 by 0.1 mol/L NaOH or 5 mol/L HCL After passing through a Millipore ultrafiltration membrane (10000 MW cut-off), ultrafiltrate was then analyzed by HPLC. The results showed that hydrochloric acid in the concentration range of 0.25-1.0 mol/L caused a significant decrease of N-sulfocarbarnoyl-11-hydroxysulfate toxin C1 (C1), C2 and gonyautoxin 5 (GTX5) and the concomitant increase of GTX2,3. However, the amount of the three unstable toxins did not show any change using the extraction with acetic acid. Under the same concentration of acetic acid (0.3 mol/L) and hydrochloric acid (0.2 mol/L), the amount of C1 in the ultrasonic extraction was obviously lower than the boiling one, while C2 showed slightly higher than the latter.

Hydrothermal synthesis and crystal structure of cluster compound {[Ni(enMe)(2)][SiW12O40]}[Ni(enMe)(2)(H2O)(2)](2) center dot 3H(2)O

the novel One-dimensional chain structure of the title cluster compound was synthesized and characterized by elemental analysis, IR spectra, TGA and X-ray single-crystal diffraction. The title cluster compound crystallized in a monochnic system with space group C2/c, a = 1.2656 nm, b = 2.20656 (4) nm, c =2.26763 (4) nm, beta = 92.078 degrees, V = 6.32852 (16) nm(3), Z = 4, D-c = 3.801 g/cm(3), A = 2.271 mm(-1), F(000) = 6512, R-1= 0.0549, wR(2) = 0.1087. The structure building block of the structure is the polyanion [SiW12O40](6-) with alpha-Keggin structure. The clusters were linked together with one-dimensional infinite chain through [ Ni ( enMe) (2)] (2+) cations. The [ Ni ( enMe) (2) ( H2O) (2)] (2+) cations and water molecules were filled in the structure. The cluster compound was expanded to three-dimensional framework by hydrogen bond interactions among molecules.

LC-DAD-ESI-MS Characterization of Carbohydrates Using a New Labeling Reagent

A novel labeling reagent 1-(2-naphthyl)-3-methyl-5-pyrazolone (NMP) coupling to liquid chromatography with electrospray ionization mass spectrometry for the detection of carbohydrates from the derivatized rape bee pollen samples is reported. Carbohydrates are derivatized to their bis-NMP-labeled derivatives. Derivatives showed an intense protonated molecular ion at m/z [M+H](+) in positive-ion detection mode. The mass-to-charge ratios of characteristic fragment ions at m/z 473.0 could be used for the accurately qualitative analysis of carbohydrates. This characteristic fragment ion is from the cleavage of C2-C3 bond in carbohydrate chain giving the specific fragment ions at m/z [MH-CmH2m+1Om-H2O](+) for pentose, hexose and glyceraldehydes and at m/z [MH-CmH2m-1Om+1-H2O](+) for alduronic acids such as galacturonic acid and glucuronic acid (m = n - 2, n is carbon number of carbohydrate). No interferences for all aliphatic and aromatic aldehydes presented in natural environmental samples were observed due to the highly specific parent mass-to-charge ratio and the characteristic fragment ions. The method, in conjunction with a gradient elution, offered a baseline resolution of carbohydrate derivatives on a reversed-phase Hypersil ODS-2 column. The carbohydrates such as mannose, galacturonic acid, glucuronic acid, rhamnose, glucose, galactose, xylose, arabinose and fucose can successfully be detected.

Analysis of carbohydrates in a tibetan medicine using new labeling reagent, 1-(2-naphthyl)-3-methyl-5-pyrazolone, by HPLC with DAD detection and ESI-MS identification

A new labeling reagent, 1-(2-naphthyl)-3-methyl-5-pyrazolone (NMP), coupling with liquid chromatography (LC) with electrospray ionization mass spectrometry (ESI-MS) for the detection of carbohydrates from a famous Tibetan medicine is reported. Carbohydrates were derivatized to their bis-NMP-labeled derivatives. The method, in conjunction with a gradient elution, offered a baseline resolution of carbohydrate derivatives on a reversed phase Hypersil ODS-2 column. The carbohydrates such as mannose, galacturonic acid, glucuronic acid, rhamnose, glucose, galactose, xylose, arabinose, and fucose could be successfully detected by UV and ESI-MS. Derivatives showed intense protonated molecular ion at m/z [M+H]+ in positive ion mode. The mass to charge ratios of characteristic fragment ions at m/z 473.0 could be used for the accurately qualitative identification of carbohydrates; this characteristic fragment ion was from the cleavage of C2-C3 bond in the carbohydrate chain giving the specific fragment ions at m/z [MH-CmH2m+1Om-H2O](+) for pentose, hexose, and glyceraldehydes, and at m/z [MH-CmH2m-1Om+1-H2O](+) for alduronic acids, such as galacturonic acid and glucuronic acid (m=n-2, n is carbon atom number of carbohydrate). Compared with the traditional 1-phenyl-3-methyl-5-pyrazolone (PMP) reagent, currently synthesized NMP show the advantage of higher sensitivity to carbohydrate compounds with UV and ESI-MS detection.

The effect of Rh particle size on the catalytic performance of porous silica supported rhodium catalysts for CO hydrogenation

Silica-supported Rh catalysts with different Rh particle dimensions were investigated for CO hydrogenation. The catalysts were characterized by various techniques such as TEM, H-2-TPR and N-2 adsorption to study the catalyst morphology, the size distributions of Rh particles and the silica pores. It was found that the distribution and the size of Rh particles were affected by the silica pores, and the metal grains were enclosed in the pores of the support, and thereby their growth was limited. The catalytic activity and selectivity to C-2-oxygenates for CO hydrogenation were found to be significantly controlled by the Rh particle sizes, and the higher activity and selectivity to C2-oxygenates were obtained over bigger Rh particles, within the range of the reported particle sizes.

Cluster-assistant generation of multiply charged atomic ions in nanosecond laser ionization of seeded methyl iodide beam

The photoionization of methyl iodide beam seeded in argon and helium is studied by time-of-flight mass spectrometry using a 25 ns, 532 nm Nd-YAG laser with intensities in the range of 2 x 10(10)-2 x 10(11) W/cm(2). Multiply charged ions Of Iq+ (q = 2-3) and C2+ with tens of eV kinetic energies have been observed when laser interacts with the middle part of the pulsed molecular beam, whose peak profiles are independent on the laser polarization directions. Strong evidences show that these ions are coming from the Coulomb explosion of multiply charged CH3I clusters, and laser induced inverse bremsstrahlung absorption of caged electrons plays a key role in the formation of multiply charged ions. (C) 2004 Elsevier B.V. All rights reserved.