122 resultados para 16S rRNA gene


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维生素C生产废水有机物浓度高、成分复杂、排放量大,是一种亟待处理的典型工业废水。本研究分别采用实验室规模和中试规模的升流式厌氧颗粒污泥床反应器(UASB)对该制药工业废水的厌氧生物处理工艺进行了较为深入的研究。同时采用两种不依赖于纯培养的分子生物学手段—变性梯度凝胶电泳(DGGE)和扩增核糖体DNA限制性分析(ARDRA)技术揭示了UASB反应器不同运行阶段污泥中微生物群落多样性组成及变化。此外,首次研究了零价铁(Fe0)在厌氧消化过程中对反应器运行及微生物群落结构的影响。 采用城市污水处理厂厌氧消化池絮状污泥和处理啤酒废水的颗粒污泥混合接种,小试中温(35±1℃)UASB反应器在其运行的第65天启动成功。反应器稳定运行阶段,在进水COD浓度为9000mg/L、水力停留时间为12h、容积负荷为13.6 kgCOD/m3.d条件下,其COD去除率稳定在85~90%之间,沼气产率达到4.5 m3/m3.d,沼气甲烷含量平均为72%。中试UASB反应器的接种污泥为厌氧消化污泥,其启动时间相对较长,为90天。在稳定运行期,反应器的进水COD浓度为8000~10000mg/L,水力停留时间和容积负荷分别保持在12~16h和10.6~14.2 kgCOD/m3.d范围,该阶段反应器的平均COD去除率稳定在85%左右,沼气产率平均为5.2m3/m3.d,沼气中甲烷含量为69%。上述结果表明中温UASB工艺用于维生素C生产废水处理是高效、可行的。 与对照反应器相比,添加Fe0的小试UASB反应器的COD去除率和沼气产量分别提高了6.5%和10.2%。同时,磷酸盐平均去除率为79%,比对照提高了64%,目前尚未见类似研究报道。在中试规模的UASB反应器中补充一定量的Fe0可缩短反应器启动时间,促进颗粒污泥的形成,该结果可能具有重要的应用价值。培养试验进一步表明,Fe0可以作为产甲烷菌还原CO2生成甲烷的电子供体。培养实验还表明,当系统中存在硝酸盐(0.40 mM)和硫酸盐(0.26 mM)时,Fe0促产甲烷过程受到一定程度的抑制。 采用细菌通用引物968F/1401R和341F/907R获得的PCR-DGGE指纹图谱均表明UASB反应器不同运行阶段细菌种群结构变化明显。小试和中试稳定期污泥的微生物多样性均高于各自初始接种污泥。产甲烷菌通用引物340F/519R的PCR-DGGE结果显示,虽然接种污泥中产甲烷菌的丰富度系数略低于稳定期,但总体而言,反应器运行期间产甲烷菌的种群组成相对稳定。 通过构建不同处理和不同运行阶段污泥样品的16S rRNA基因文库并对克隆基因进行限制性内切酶消化、测序分析。结果表明,稳定期两个反应器微生物群落结构相似,但与各自接种污泥差异明显。小试UASB反应器接种污泥中细菌的优势菌群分别为变形菌纲的δ亚纲(28.7%)和β亚纲(17.4%),至稳定运行期则演替为革兰氏阳性低GC菌群(21.9%)和变形菌纲的δ亚纲(14.0%)。中试反应器接种污泥Green non-sulfer bacteria(25.9%)和变形菌纲的δ亚纲(16.4%)类群占优势,而稳定期Green non-sulfer bacteria类群(17.9%)、革兰氏阳性低GC菌群(16.2%)和变形菌纲的δ亚纲(15.4%)为优势菌群。 产甲烷菌的优势克隆为SRJ 230、SRJ 26和SRJ 583,前两者分别与Methanosaeta concilii和未培养的Methanobacteria-like克隆Gran7M4的同源性达到97%和98%,后者与Methanomethylovorans. sp同源性为99%。接种污泥中上述类群占总克隆数量的比例较低。小试、中试接种污泥中产甲烷菌分别占7.8%和3.0%,但稳定运行期,该比例明显增加,分别达到21.9%和18.8%。上述结果表明启动期与稳定期污泥产甲烷菌种群组成相对稳定,但各类群数量明显增加。 添加Fe0的UASB反应器稳定运行期污泥中产甲烷菌比例(31.2%)高于对照反应器(24.2%), 革兰氏阳性低GC类群、变形菌纲的δ亚纲比例差异不明显,而变形菌纲β亚纲(6.0%)和Green non-sulfer bacteria(9.2%)的比例均分别低于对照反应器(13.1%和17.1%)。该结果表明,添加Fe0使反应器内微生物群落多样性发生了显著变化。 此外,在添加Fe0的UASB反应器中检测到特异性的克隆SRJ 341和SRJ 320,两者分别同磷酸盐去除和铁氧化有关的克隆子Orbal D41和Clone195的序列相似性达95%和96%。这两个类群可能分别与磷酸盐去除及铁促产甲烷作用密切相关。这一结果尚未见报道。

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污水生物处理系统本质上是一种人工强化的工程化微生态系统。污水处理过程往往由多个功能互补的反应单元协同完成,例如因对污水中有机碳、氮和磷兼具良好的去除功能而在城市污水处理中被广泛应用的Anoxic / Oxic(A/O)生物处理工艺。不同反应单元特有的微生物群落之间的相互关系和相互作用与处理系统的稳定性和处理效率密切相关。所以对污水处理系统中微生物群落进行系统分析非常重要。研究系统中微生物群落的时空演替对于优化处理系统的设计和操作具有重要意义。但是,以往对于污水处理系统中微生态系统的解析多数针对实验室规模的其中个别反应器独立进行,还缺乏从系统水平对实际大规模运行的整个污水处理过程中所有反应单元群落进行分析的研究。 悬挂链移动曝气系统是对A / O工艺的完善和发展。悬挂链曝气工艺的实现是依靠悬挂链移动曝气设备和完善的自动控制系统来完成的。可以在系统中实现类似多级A/O的可能性,水力停留时间较长,污泥龄达到15天以上,能够完全实现A / O 工艺。 目前正被广泛应用在各种行业的污水处理项目中。 本文应用基于细菌16S rRNA中的PCR扩增方法(Polymerase Chain Reactor),结合变性梯度凝胶电泳指纹分离技术(Denaturing Gradient Gel Electrophoresis, DGGE),对实际规模的运用Anoxic / Oxic(A/O)工艺并采用悬挂链式移动曝气技术的污水生物处理系统中微生物群落特征,主要对细菌组成结构和群落动态,细菌优势菌群的多样性以及与系统功能稳定性的关系进行了研究,拟为更全面了解活性污泥处理系统中的优势菌群特征,以及细菌群落结构和功能动态变化关系,实现对活性污泥处理的优化操作,对污染物降解功能菌群的筛选,为运用现代培养技术实现分离培养并运用于环境修复实践奠定方法和理论基础。 首先,对影响PCR-DGGE分析的重要前操作步骤进行了优化和筛选,包括两个方面:细菌基因组DNA的高效提取和纯化;不同16S rRNA靶序列对PCR-DGGE分析的影响。从中选出适合于活性污泥样品的细菌基因组DNA提取方法和PCR-DGGE分析的最优靶序列组合。 其次,运用PCR-DGGE指纹图谱技术分析了该污水处理系统中不同功能反应单元中活性污泥的细菌种群结构特征,探讨了系统运行过程中细菌种群时间和空间上的动态特征。并将图谱中所显示的优势条带进行切割回收,重复扩增,电泳检测,序列测定并与GenaBank数据库中的微生物类群进行同源性比对,探讨活性污泥中细菌种群多样性,了解污泥中可能含有的主要具有污染物降解功能的类群信息。 在整个处理过程中,同一功能反应单元中不同位置的活性污泥微生物菌群结构不同。执行不同功能的处理单元活性污泥细菌多样性和组成结构各有不同。 在系统稳定运行的状态下,细菌组成结构的时间变化动态不显著。但是在系统的不同操作条件下,主要处理池的微生物群落的DGGE遗传指纹图谱较独特。 对该处理系统污泥中优势菌群的序列测定和同源性比对表明,优势菌群所对应的细菌的16S rDNA序列可以被归属于以下四个主要的细菌系:α, β, γ- Proteobacteria 以及厚壁菌门 phylum Firmicutes (low G+C Gram-positive)。 该处理系统的优势菌群的DGGE条带拥有潜在的具有异养硝化/好氧反硝化的除 N / P 类群。该类菌群中的大多数属于Pseudomonas spp.。另外,回收到两个与已鉴定的具有异养硝化和好氧反硝化能力的Pseudomonas stutzeri 和 Pseudomonas borbori 最相似的菌株的条带。γ-变形菌纲门(γ- Proteobacteria)的微生物类群在该缺氧-好氧处理厂中分布较广泛,尤其是和 N / P 去除紧密相关的具有脱氮除磷能力的Pseudomonas 类群,而且在好氧曝气处理池中分布较广,这可能和系统中表现的好氧反硝化现象相关。 不同的操作状况下微生物群落结构有差异。增加污泥回流比,增加DO(Dissolved oxygen)浓度,COD去除率和NH4+-N去除率显著增加,总N和总P的去除率改变不显著。 最后,对整个处理过程中微生物群落结构在系统正常调控改变范围内的长期动态和稳定性进行了探讨。整个处理系统的长期稳定性与体系中的每个处理环节相关,而不是仅与其中的单个主要反应池相关。污水处理体系的功能稳定性与其中的微生物群落稳定性相关,微生物群落结构决定了生态功能,群落结构变化能反应系统的运行状况及其降解效率。

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微生物修复是石油污染土壤修复的主要方法之一,但是对修复过程中微生物的检测却是其主要限制因素,传统的检测方法存在很大的局限性,而荧光原位杂交技术结合了分子生物学的精确性和显微镜的可视化信息,可较为精确快速的对微生物进行定性和定量测定。 实验中利用辽河油田污染土壤中筛选纯化的高效石油降解菌,以原油为碳源,考察不同菌株处理后的去除率变化。发现有8株菌:B101、B381、B0502、B25 、B64、B2001、B2003、B18,在14 d内对石油的降解率都在20%以上,且族组分分析结果显示,被降解部分主要是烷烃和芳烃。经鉴定,此8株菌均为杆菌。 同时,对5株石油降解菌标准菌株(铜绿假单胞菌、巨大芽孢杆菌、枯草芽孢杆菌、苏云金芽孢杆菌和地衣芽孢杆菌)在基因库中比对,核苷酸同源性显示其相似性均在98%以上,因此针对其16S rRNA设计寡核苷酸探针。 将上述5种探针应用于荧光原位杂交实验,分别作用于8株降解菌和5株标准菌株,得出5种探针均符合特异性标准,仅地衣芽孢杆菌探针与B381之间有特异性荧光反应。添加B381(地衣芽孢杆菌)于泥浆反应器中降解石油烃。鉴于石油污染土壤的复杂组成,检测泥浆反应器中地衣芽孢杆菌的FISH条件优化结果为:样品固定时间17 h,杂交温度46 ℃,杂交时间3 h,杂交液中去离子甲酰胺浓度35%,冲洗缓冲液中与去离子甲酰胺对应的NaCl的浓度88 mmol∙L-1。运用上述FISH技术监测生物泥浆反应器中地衣芽孢杆菌量的变化,得出地衣芽孢杆菌的浓度在第5天达到最大,同时对泥浆反应器中去除率进行测定,前5天菌对原油的去除速率也最高,前8 d是石油烃被去除的主要作用阶段。微生物的数量变化和原油的去除率进行比较,两者的变化情况符合微生物降解石油的趋势,为监测含油污泥中微生物的变化提供了一种可行的技术。

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本文研究了地理位置、海拔、坡向、树龄和林型与旱冬瓜共生Frankia的关系,同时研究了用旱冬瓜根瘤接种其它放线菌根植物后,Frankia的16S rRNA基因的变化。结果发现:1.云南旱冬瓜共生Frankia存在丰富的基因多样性,云南14个市县旱冬瓜的共生Frankia存在7种基因类型,其香农维纳指数为2.6395nit。 2.云南旱冬瓜共生Frankia的基因多样性与纬度有一定的关系,而与经度关系不密切。3.在不同基因型的Frankia中,有的对海拔适应范围较广,有的较窄。4.地理位置和海拔属于大环境,它们形成了云南旱冬瓜共生Frankia的主要基因类型,而海拔、坡向、树龄属于小环境,它们形成云南省旱冬瓜共生Frankia亚基因类型。5. Frankia的基因多样性是生态适应和生态进化共同作用结果。6.滇中和滇西是云南旱冬瓜共生Frankia的两个分布中心和多样化中心,它们向南扩展后Frankia基因多样性降低。7.Frankia基因多样性呈现出地理马赛克现象,而不是地理镶嵌。8.在云南,旱冬瓜中共生的Frankia是共生于其它放线菌根植物的种子储备库。本文提出应该对丰富的Frankia基因多样性进行保护,建立云南旱冬瓜与共生Frankia的数据库;提出进一步研究快速检测旱冬瓜-Frankia和不同基因型Frankia的分子探针研究的构想。

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本文主要研究了从造纸厂碱性土壤中筛选得到的,能够产生耐碱木聚糖酶的两株放线菌X24-14和X15-17。通过16 S rRNA基因序列分析并结合菌株的形态特征以及生理生化特性,初步认为菌株X15-17为拟诺卡氏菌属(Nocardiopsis)的一个潜在新种;菌株X24-14为纤维化纤维菌(Cellulosimicrobium cellulans)。 在此基础上探索了菌株X24-14和菌株X15-17所产木聚糖酶的基本酶学性质。研究发现,两株菌所产的木聚糖酶的耐碱性均较强: 1)菌株X24-14所产的木聚糖酶,在pH 4.2~9.4的范围内能维持较高的活力,pH 9.4条件下,仍能保持80%的酶活力;2)菌株X15-17所产的木聚糖酶在pH 4.0~9.0的范围内能维持较高的活力,pH 9.0条件下,仍能保持80%的酶活力;3)两株菌所产的木聚糖酶均具有较好的pH稳定性,在pH 2.0~11.0范围内稳定,pH 11.0、4 ℃条件下处理24 h仍具有75%的活力。 本文还重点研究了菌株X24-14在不同培养基成分及不同培养条件下的产酶情况,确定了其适宜的产酶条件。结果显示,菌株X24-14的最适碳源为麸皮;最适氮源为蛋白胨;最适产酶pH为pH 8.5。菌株X24-14适宜的产酶条件为:麸皮60 g/L,蛋白胨10 g/L,K2HPO4 7.0 g/L,pH 8.5,接种量为5%,37 ℃,200 r/min发酵培养108 h。 Two strains of actinomycetes, X24-14 and X15-17, which produced alkali-tolerant xylanase were screened from the soil samples collected from a pulp mill in china. Based on the morphological, physiochemical characteristics and 16S rRNA sequence, X24-14 was priminarily identified as cellulosimicrobium cellulans ; X15-17 was priminarily identified as a new species of Nocardiopsis. The investigation examined the enzyme activities which produced by X24-14 and X15-17 under different pH and different temperatures. The results showed that : 1)The xylanase from X24-14 had characteristic of alkali-tolerance: It remains 80% relative activity at pH ranges between pH 4.2 and pH 9.4 under 50℃. 2)The xylanase from X15-17 also showed characteristic of alkali-tolerance, it remains 80% relative activity at pH ranges between pH 4.0and pH 9.0 under 50℃. 3)The xylanase from the two strains showed alkali-stable characteristics. They were stable at pH ranges between pH 2.0 and pH 11.0, showing 75% of its maximal activity remaining under 24 hours of treatment at 4℃. We also studied the effect of different growth conditions: carbon source, nitrogen sources, inoculum size, and initial pH on the production of xylanase of strain X24-14. The results showed that :The optimal carbon source was wheat bran; The optima nitrogen source was peptone; The maximum xylanase activity was achieved in the medium containing 60 g/L wheat bran, 10 g/L peptone, 7 g/L K2HPO4, inoculum size 5% and pH 8.5, under 37℃ in 108 h.

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畜禽废水是农村水环境污染的主要来源之一,其处理的难点在于脱氮。传统生物脱氮法具有能耗高、需大量外加碳源等缺点,开发低成本、高效率的新型生物脱氮技术具有重要意义。 本研究将短程硝化反硝化和厌氧氨氧化两种脱氮新技术结合,让前者为后者创造去除可降解COD、降低总氮负荷、调整pH、调整氨氮和亚硝酸盐氮浓度比例等进水条件,而后者可在无需外加碳源的条件下进一步脱氮,二者结合可成为高氨氮、低C/N废水脱氮的新途径。 试验以低碳氮比猪场废水为研究对象,首先进行了短程硝化反硝化预处理研究,同时启动并运行调控厌氧氨氧化反应器,最后以经过短程硝化反硝化预处理的猪场废水为进水,进行厌氧氨氧化脱氮考察。实验表明:(1)短程硝化反硝化作为厌氧氨氧化的预处理工序是可行的。猪场废水通过短程硝化反硝化,可以达到基本去除可生化COD、部分脱氮、控制出水氨氮和亚硝酸盐氮浓度之比在1︰1左右、pH在7.5~8.0的目的, COD和总氮平均去除率分别为64.3%、49.1%,出水可达到厌氧氨氧化反应的进水要求。(2)采用模拟废水启动厌氧氨氧化反应器,经过5个月左右的运行调控,反应器启动成功并稳定运行,最高总氮去除率为87.1%,总氮容积去除率最高达到0.14kg/m3.d;整个稳定阶段,氨氮、亚硝酸盐氮、硝酸盐氮的变化量之比为1︰1.21︰0.33。(3)经过短程硝化反硝化预处理的猪场废水厌氧氨氧化脱氮效果稳定,氨氮、亚硝酸盐氮、总氮、COD的平均去除率分别为93.0%、99.4%、84.6%、18.1%,处理效果与模拟废水处理系统相比无明显变化。(4)经过短程硝化反硝化预处理后,猪场废水中残留有机物成分在厌氧氨氧化反应过程中无显著变化,主要为酯类和烷烃类物质;残留有机物对厌氧氨氧化效果无明显影响。(5)采用PCR技术进行特殊功能菌种检测,结果表明模拟废水处理系统和猪场废水处理系统的菌群中均含有厌氧氨氧化菌和好氧硝化菌;通过blast比对,厌氧氨氧化菌扩增序列与未培养的Planctomycetales菌和Candidatus Brocadia fulgida菌16S rRNA部分序列相似性分别为95%、90%。(6)MPN法菌种计数结果显示,模拟废水处理系统和猪场废水处理系统的菌群中均含有硝化细菌、亚硝化细菌和少量反硝化菌,实验条件下的微生物系统是一个厌氧氨氧化菌与好氧硝化菌、反硝化菌共存的系统。 Poultry wastewater is one of the main source of water pollution in rural areas,and nitrogen removal is the most difficult part in treating poultry wastewater. There are some disadvantages in traditional nitrogen removal, such as high energy consumption and more additional organic carbon. It is important to develop ecolomical and efficient technologyies. Shortcut nitricfication/denitrification, as a pretreatment process, was combined with Anammox in this research, so that part of total nitrogen and most degradable COD could be removed by the former, and further nitrogen removal could be implemented by the latter. The combination of the two technologies was a new approach to treat wastewater with high ammonium and low C/N. Piggery wastewater with low C/N was treated in lab-scale experiment. Firstly, shortcut nitrification/denitrification was investigated, and Anammox reactor was started up successfully at the same time. Then piggery wastewater after pretreatment was treated by Anammox. The results showed :(1) It was feasible to take nitrification/denitrification as the pretreatment process of Anammox. By using this process, part of total nitrogen and COD were removed, the ratio of ammonium and nitrite reached around 1︰1 and the pH was about 7.8, which were favorable for Anammox. The average removal percentage of COD and total nitrogen were about 64.3% and 49.1%, respectively. (2) Simulated wastewater was used to start up Anammox reactor. The reactor was started up successfully within 5 months and stable performance was achieved. The highest nitrogen removal reached 87.1% and the biggest volumetric total nitrogen removal rate reached 0.14kg/m3.d. The average ratio of ammonium, nitrite and nitrate was 1:1.21:0.33. (3)Taking the effluent of shortcut nitrification/denitrification as the influent, the nitrogen removal efficiency of Anammox was stable, and the the average removal percentage of ammonium, nitrite, total nitrogen and COD were 93.0%, 99.4% , 84.6% and 18.1%, respectively, which had little difference with that by using simulated wastewater..(4) After pretreatment, the residual organic carbon in piggery wastewater showed no obvious change during the Anammox process, and the main organic compounds were saturated hydrocarbon and ester, which had no obvious negative effect on Anammox process.(5) By PCR technology, the existence of Anammox bacteria was confirmed and the aerobic nitrifying bacteria was found to coexist as well. The result of blast showed that the identities of Anammox bacterium to part of 16S rRNA sequence of uncultured Planctomycetales bacterium and Candidatus Brocadia fulgida bacterium were 95% and 90%, respectively.(6)By MPN method, nitrite oxidizer, ammonium oxidizer and denitrification bacteria were detected in both simulated and piggery wastewater treatment system of Anammox, and the microorganism system was composed of Anammox bacteria,aerobic bacteria and denitrification bacteria together.

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本文从成都龙泉垃圾填埋场和宜宾造纸厂分离到耐酸性能优良的高温产甲烷菌RY3和中温产甲烷菌SH4,并将其与实验室现有的利用不同底物的产甲烷菌配伍组合成了复合菌剂。采用活性污泥作为固体附着物,研制出了固体产甲烷菌复合菌剂。 菌株RY3的pH耐受范围为5.5~10.5,最适生长pH 6.0~8.0。菌株RY3为革兰氏阳性,长杆状,多数单生,不运动;菌落浅黄色,形状近圆形;利用H2+CO2或甲酸盐作为唯一碳源生长,不利用乙酸盐,对氯霉素非常敏感。该菌最适生长温度为55℃~65℃,最适NaCl浓度为0~2%。根据形态和生理生化特性及16S rDNA序列分析将其初步定为热自养甲烷热杆菌(Methanothermobacter thermautotrophicus)。添加RY3菌液与仅添加厌氧污泥作为接种物相比一周内可使达到最大产甲烷速率所需时间缩短三分之二,甲烷总产量提高约1.8倍。菌株SH4的生长pH范围5.5~9.5,其对酸碱具有良好的适应性,培养3天后,在初始pH值为6.0~8.0的培养基中甲烷产量相差不大,且基本达到最大产量。SH4革兰氏染色阳性,短杆状,多数单生,不运动;菌落近圆形,微黄;利用H2+CO2或甲酸盐作为唯一碳源生长,不利用乙酸盐,对氯霉素非常敏感。SH4最适生长pH 为7.0,最适生长温度为35℃,最适NaCl浓度为0~1.5%。实验表明,添加SH4菌液与仅添加厌氧污泥作为接种物相比可使产甲烷启动时间缩短三分之一,甲烷总产量亦有大幅提高。从形态和生理生化特征以及16S rDNA序列分析表明SH4为嗜树木甲烷短杆菌(Methanobrevibacter arboriphilus)。 以活性污泥为附着物,与培养基和菌种经搅拌后厌氧发酵可得产甲烷菌固体复合菌剂。固体复合菌剂的pH耐受范围为5.5~9.5,温度耐受范围为15℃~65℃,表明其对环境的适应性较强。以猪粪为底物进行厌氧发酵,接种复合菌剂进行试验,以接种实验室长期富集的产甲烷厌氧污泥作为对照,在20℃时,发酵甲烷浓度与对照基本一致,但每日产气量优于对照,第15天时接种复合菌剂的发酵瓶每日产气量是对照的1.59倍;50℃时达到最大甲烷含量所需时间比对照缩短三分之二,三周内总产气量约为对照的2.7倍,甲烷总产量约为2.8倍。以不加接种物为对照,接种复合菌剂20℃时发酵甲烷含量达到50%约需2周,对照2周内甲烷含量最高仅为4.3%;50℃时接种复合菌剂发酵仅需约1周甲烷含量便可达50%,对照则至少需要2周。 In this paper, high-temperature Methanogen RY3 and middle-temperature SH4 were isolated from Chengdu Longquan refuse landfill and Yibin paper mill. They could be used to make compound inoculum that producing methane with the existing Methanogens utilized different substrate. With using anaerobic activated sludge be solid fixture, the process had been designed to produce solid compound inoculum. Strain RY3 possessed excellent capacity of acid and alkali-tolerant. The pH-tolerant scale of RY3 was 5.5~10.5 and its optimum pH value for growth was 6.0~8.0. RY3 was G+, long-rod shape, monothetic and nonmotile, the colony was pale yellow with suborbicular-shape. Formate or H2+CO2 but not acetate was utilized by RY3 as sole C-source, and it was very sensitive to chloramphenicol. Besides, strain RY3 grew fastest at 55℃~65 and 0℃~2% NaCl. Characteristics of modality and physiology with sequence analysis of the 16s rDNA gene of strain RY3 preliminarily showed that it was Methanothermobacter thermautotrophicus. The experiments indicated that the time which began to produce methane with the highest velocity could be shortened two third by adding RY3 in one week, and the total methane production also was 1.8 times than before. Strain SH4 possessed wide scale of growing pH(5.5~9.5)and excellent ability of acclimatizing itself to acid-alkali. The methane production had no apparent difference among those cultivated in different initial pH(6.0~8.0)after three days and equaled to the maximum production basically. Cells of SH4 were G+, short-rod sharp, monothetic and nonmotile. The colony was pale yellow with suborbicular-shape. Formate or H2+CO2 but not acetate was utilized by SH4 as sole C-source, and it was very sensitive to chloramphenicol. Besides, it grew fastest at pH 7.0,55 ℃~65 and 0℃~2% NaCl concentration. The experiment indicated the time that began to produce methane could be shortening one third by adding SH4. And the total methane production also rose apparently. Characteristic of modality and physiology with sequence analysis of the 16S rDNA gene of strain SH4 demonstrated it was Methanobrevibacter arboriphilus. The activated sludge was utilized as fixture, mixed with culture medium and inocolum, that the solid compound inoculum could be produced by anaerobic fermentation. The compound inoculum could grow between pH 5.5~9.5, 15℃~65. It demonstrated the compound inoculum ha℃ve great ability of adapting to circumstance. In the experiment that making pig manure be substrate and taking the anaerobic sludge producing methane that cultured in long term in laboratory to be comparison, the concentration of methane in fermentation added compound inoculum almost equal to the comparison at 20℃, but the volume of gas production could be a little higher. The gas production everyday inoculated compound inoculum was 1.59 times to comparison. The time that the concentration of methane to maximum could be shortening by two third by adding compound inoculum, and the total gas production was 2.7 times to comprison while the total methane production was 2.8 times. If take the no inoculum be the comprasion, anaerobic fermentation added compound inoculum made the concentration of methane to 50% in 2 weeks but the comparison only to 4.3% at 20℃. The time that the concentration of methane to 50% by adding compound inoculum only need 1 week, but the comparison need 2 weeks at 50℃.

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从采集的土壤样品中分离筛选出一株碱性蛋白酶产生菌G-41,经16S rRNA分子鉴定为芽孢杆菌属菌株。该菌株在发酵培养基中能产生较高产量的胞外碱性蛋白酶(1.7×104U/mL)。以G-41为出发菌株,对其进行重离子辐照诱变处理,获得突变株G-41-68,将该突变株再次经重离子诱变,从大量突变株中筛选出碱性蛋白酶高产菌株15Gy-54,其酶活力达到6.22×104U/mL。与出发菌株相比较,突变株G-41-68和15Gy-54的酶活力分别提高了1.58倍和2.65倍。对突变株15Gy-54的发酵条件进行了优化研究,结果表明,该菌株的碱性蛋白酶活力得到进一步提高,达到7.18×104U/mL,其最适发酵条件为:培养基(g/100mL)为胰蛋白胨1、酵母膏0.5、乳糖5、Na2HPO4·12H2O0.4、KH2PO40.03、Na2CO30.1、MgSO40.0481(4×10-3mol/L)、pH8.0,培养温度41℃,振荡培养时间42-48h。实验结果表明,重离子辐照诱变技术是一种非常有效的微生物诱变育种新技术。

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从南海红树林木榄(Bruguiera gymnorrhizo)根际土壤中分离到一株具有拮抗杉木致害菌尖孢镰刀菌萎蔫专化型SF2(Fusariumoxysporum f.sp.vasinfectum)活性的海洋细菌3728菌株,对分离菌株的形态特征、培养特征、生理生化特征和16S rRNA基因序列进行了系统的研究。发现细菌3728与枯草芽孢杆菌(Bacillus subtilis)序列相似性最高,达到100%,在系统进化树中与枯草芽孢杆菌(Bacillus subtilis AJ276351)处于同一分支上,结合形态和生理生化分析结果,将其鉴定为枯草芽孢杆菌。

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Diversity of particle-attached and free-living marine bacteria in Victoria Harbor, Hong Kong, and its adjacent coastal and estuarial environments was investigated using DNA fingerprinting and clone library analysis. Denaturing gradient gel electrophoresis (DGGE) analysis of 16S rRNA genes showed that bacterial communities in three stations of Victoria Harbor were similar, but differed from those in adjacent coastal and estuarine stations. Particle-attached and free-living bacterial community composition differed in the Victoria Harbor area. DNA sequencing of 28 bands from DGGE gel showed Alphaproteobacteria was the most abundant group, followed by the Bacteroidetes, and other Proteobacteria. Bacterial species richness (number of DGGE bands) differed among stations and populations (particle-attached and free-living; bottom and surface). BIOENV analysis indicated that the concentrations of suspended solids were the major contributing parameter for the spatial variation of total bacterial community structure. Samples from representative stations were selected for clone library (548 clones) construction and their phylogenetic distributions were similar to those of sequences from DGGE. Approximately 80% of clones were affiliated to Proteobacteria, Bacteroidetes and Cyanobacteria. The possible influences of dynamic pollution and hydrological conditions in the Victoria Harbor area on the particle-attached and free-living bacterial community structures were discussed.

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Diversity of particle-attached and free-living marine bacteria in Victoria Harbor, Hong Kong, and its adjacent coastal and estuarial environments was investigated using DNA fingerprinting and clone library analysis. Denaturing gradient gel electrophoresis (DGGE) analysis of 16S rRNA genes showed that bacterial communities in three stations of Victoria Harbor were similar, but differed from those in adjacent coastal and estuarine stations. Particle-attached and free-living bacterial community composition differed in the Victoria Harbor area. DNA sequencing of 28 bands from DGGE gel showed Alphaproteobacteria was the most abundant group, followed by the Bacteroidetes, and other Proteobacteria. Bacterial species richness (number of DGGE bands) differed among stations and populations (particle-attached and free-living; bottom and surface). BIOENV analysis indicated that the concentrations of suspended solids were the major contributing parameter for the spatial variation of total bacterial community structure. Samples from representative stations were selected for clone library (548 clones) construction and their phylogenetic distributions were similar to those of sequences from DGGE. Approximately 80% of clones were affiliated to Proteobacteria, Bacteroidetes and Cyanobacteria. The possible influences of dynamic pollution and hydrological conditions in the Victoria Harbor area on the particle-attached and free-living bacterial community structures were discussed.

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Barcodes based on mitochondrial cytochrome oxidase (mtDNA CO1) sequences are being used for broad taxonomic groups of animals with demonstrated success in species identification and cryptic species discovery, but it has become clear that complementation by a nuclear marker system is necessary, in particular for the barcoding of plants. Here, we propose the nuclear internal transcribed spacer (ITS) as a potentially usable and complementary marker for species identification of red macroalgae, as well as present a primary workflow for species barcoding. Data show that for most red macroalgal genera (except members of the family Delesseriaceae), the size of ITS region ranges from 600 to 1200 bp, and contains enough variation to generate unique identifiers at either the species or genus levels. Consistent with previous studies, we found that the ITS sequence can resolve closely related species with the same fidelity as mtDNA CO1. Significantly, we confirmed that length polymorphism in the ITS region (including 5.8S rRNA gene) can be utilized as a character to discriminate red macroalgal species. As a complementary marker, the verifiable nuclear ITS region can speed routine identification and the detection of species, advance ecological and taxonomic inquiry, and permit rapid and accurate analysis of red macroalgae.

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In this work, the characterization of a chitosanase-producing bacterium isolated from soil was reported and this strain was grouped under the genus Aeromonas by virtue of its morphological, physiological properties and 16S rDNA gene sequences. It is the first report that the genus Aeromonas could produce chitosanase. Aeromonas sp. HG08 could secrete the chitosanase ( named AsChi) with molecular weight of 70 kDa. The optimum pH and temperature of AsChi was 6.0 and 55 degrees C, respectively. The activity of AsChi was markedly enhanced by Mn2+ and inhibited by Fe3+, Cu2+, Ag+ and Hg2+; additionally, the activity of AsChi was increased with the degree of deacetylation ( DDA) of chitosan. Through viscosimetric assay, AsChi probably hydrolyzed chitosan in an endo-type fashion.