Frankia的REP-PCR、RAPD-PCR鉴定及遗传多样性研究

本文采用溶菌酶法、CTAB法、微波法及CTAB+微波法等4种方法进行Frankia菌Cp11基因组DNA的提取。结果表明四种方式均可行，但以CTAB法及微波法最为有效。提取方法与REP-PCR带型间关系的研究表明，方法上的差异不会影响到REP-PCR带型的变化。对14株Frankia菌株作REP-PCR分析，并对之进行比较分类，证明REP-PCR方法不但能实现菌株间的差异鉴别，还能有效地进行Frankia菌的分类。这一结果与DNA同源相关性所得的分类结果具有良好的相关性。选用20个随机引物，对分自2个分类接种群的8株Frankia纯培养的总DNA进行随机扩增。其中引物OPW15和OPW16能扩增得到较为稳定的RAPD图谱。扩增产物分子量大都分布在0.5-4Kb之间。从稳定的RAPD扩增图谱看，Frankia菌间存在有丰富的遗传多样性；在选定适当引物情况下，能依据共同带型将Frankia菌化归为同一分类接种群。

碳离子辐射大丽花矮化突变体的RAPD分析

大丽花经兰州重离子加速器提供的80MeV/u12C6+离子束辐照后产生矮化突变体,用随机扩增多态性(Random Amplified Polymorphic,RAPD)DNA技术对野生型和突变体进行检测分析。结果表明,在所用的25条引物中,1.80×108/cm2剂量辐照后有18条引物扩增出现多态性片断,扩增条带多态率19.57%;1.08×108/cm2剂量辐照后仅有6条引物扩增出现多态性片断,扩增条带多态率5.76%。用Jaccard公式对扩增产物进行统计分析,结果表明,两种剂量C6+辐照后与对照相似性系数分别为0.65和0.92。高剂量辐射后DNA易发生突变,在品种改良和诱变育种中相对较高剂量的选择可能更为有效。

重离子束辐照对苜蓿外植体离体培养的影响及下胚轴再生体的RAPD分析

采用初始能量为100MeV/u的重离子束12C6+对紫花苜蓿下胚轴及子叶外植体进行辐照处理,研究重离子辐照对愈伤组织诱导状态及诱导率、愈伤组织相对生长率、体细胞胚诱导率及植株再生的影响。结果表明,重离子辐照对下胚轴及子叶愈伤组织的诱导具有抑制作用,且出愈率随着辐照剂量的增大而降低;在继代培养过程中,其愈伤组织相对生长率均高于对照组,外植体本身对重离子辐照所造成的损伤具有恢复能力;辐照处理对体细胞胚胎诱导也有影响,30Gy时,下胚轴诱导的体细胞胚胎发生较对照组早,数量多,较早地得到再生植株;而50Gy时,所得到的体细胞胚未能发育成再生植株。同时应用随机扩增多态性DNA(Random amplified polymorphic DNA,RAPD)技术对重离子辐照处理下胚轴所得再生植株进行检测分析,结果表明:所采用的20条随机引物中有11条在对照及处理组所得再生植株之间扩增出差异性多态条带,表明了重离子辐照引起苜蓿再生植株基因组DNA发生变异。

~(12)C~(6+)重离子辐照大葱的细胞学和RAPD分析

用309、0和180Gy12C6+重离子辐照处理大葱干种子,研究其对大葱根尖的细胞学效应,并采用随机扩增多态性DNA(RAPD)技术初步分析了其变异类型。不同剂量12C6+的重离子照射能有效诱导大葱根尖细胞微核和染色体畸变。随着辐照剂量的增加,幼苗根尖细胞微核形成几率明显增大,微核率、多微核率和染色体总畸变率呈线性上升。但除去微核以外的染色体畸变率则呈U型变化。RAPD结果表明,大葱不同处理之间的DNA存在明显差异,所用35种引物中有28种出现了特异性条带,既有新增条带,又有缺失条带,还有迁移率的差异。30、90和180Gy剂量辐照引起的RAPD变异率分别为29.91%、41.05%和22.14%。结果发现高微核率和染色体变异过大会导致高致死效应,使得染色体总畸变率高的处理组在当代生长苗的DNA变异率变小。

电子束辐照紫花苜蓿愈伤组织后再生苗的RAPD分析

<正>目的:利用RAPD技术研究了电子束辐照紫花苜蓿愈伤组织后引起苜蓿再生苗基因组DNA的变异,为电子束辐照诱变的分子机制研究提供理论依据。

Frankia菌的遗传多样性的RAPD研究

选用20个随机引物，对分自2个分类接种群的8株Frandia纯培养的总DNA进行随机扩增，其中引物OPW15和OPW16能扩增得到较为稳定的RAPD图谱．扩增产物分子量大都分布在0．5～4Kb之间．从稳定的RAPD扩增图谱看，Frankia菌间存在有丰富的遗传多样性；在选定适当引物情况下，能依据共同带将Frankia菌化归为同一分类接种群．

RAPD技术在微生物生物多样鉴定中的应用

RAPD（随机放大多态性DNA）是1种新的DNA分子标记技术。与RFLp、AFLP及ARDRA相比，RAPD具有可在一次试验中同时观察到大量的DNA多态性片段，方法更具简单、敏感、花费少等优点。阐述了RAPD的原理方法，及目前在微生物分类鉴定研究中的应用，并分析了RAPD技术在共生固氮放线菌Frankia分类鉴定及系统发育研究中的应用前景。

Hybrids between olive flounder Paralichthys olivaceus and stone flounder Kareius bicoloratus: karyotype, allozyme and RAPD analyses

The hybrid between olive flounder Paralichthys olivaceus and stone flounder Kareius bicoloratus was produced by artificial insemination of olive flounder eggs with stone flounder sperm. Sinistral and dextral are two types of hybrid progeny after metamorphosis. Karyotypes of both hybrid flounders are the same as those of the two parental species. Of the 22 loci examined from 12 allozymes, 12 confirmed hybridization of the paternal and maternal loci in hybrids and no difference was found in allozyme patterns of sinistral and dextral hybrid fishes. RAPD patterns of these specimens were also studied with 38 primers selected from 104 tested. Among them, the PCR products of 30 primers showed hybridization of the paternal and maternal bands. Genetic variation between hybrids and their parental stocks was analyzed by RAPD using 10 of the above 38 primers. The average heterozygosity and genetic distance were calculated. The results suggested that the filial generation could inherit a little more genetic materials from paternal fish than that from maternal fish.

DNA fingerprinting of selected Laminaria (Phaeophyta) gametophytes by RAPD markers

Random amplified polymorphism DNA (RAPD) analysis was applied to germplasm characterization in 33 different selected Laminaria male and female gametophytes. The positional homology of the RAPD analysis using sequence characterized applied region (SCAR) method was successfully conducted. A total of 233 polymorphic loci were obtained from 18 selected primers after screening, of which 27 stable and clear bands were selected to construct a fingerprint map for discrimination of each gametophyte. Seven RAPD markers from five primers were finally determined by a computer program to construct the fingerprint map. Three specific markers closely related with gametophytes were obtained and were converted to gametophytic SCAR markers, the first SCAR marker report on Laminaria germplasm and applicable to cultivars identification. These results demonstrated the feasibility of applying RAPD markers to germplasm characterization in selected Laminaria gametophytes, and can provide a molecular basis for breeding new Laminaria strains. (C) 2004 Elsevier B.V. All rights reserved.

Analysis of three marine fish cell lines by RAPD assay

We tested the applicability of the random amplified polymorphic deoxyribonucleic acid (RAPD) analysis for identification of three marine fish cell lines FG. SPH, and RSBK and as a possible tool to detect cross-contamination. Sixth commercial 10-mer RAPD primers were tested on the cell lines and on samples collected from individual fish. The results obtained showed that the cell lines could be identified to the correspondent species on the basis of identical Patterns produced by 35-48% of the primers tested. the total mean similarity indices for cell lines versus correspondent species of individual fish ranged from 0.825 to 0.851. indicating the existence of genetic variation in these cell lines in relation to the species of their origin. Also, four primers, which gave a monomorphic hand pattern within species/line, but different among the species/line, were obtained. These primers can be useful for identification of these cell lines and for characterization of the genetic variation of these cell lines in relation to the species of their origin. This supported the use of RAPD analysis as an effective tool in species identification and cross-contamination test among different cell lines.

Genetic structure analysis of natural Sargassum muticum (Fucales, Phaeophyta) populations using RAPD and ISSR markers

Sargassum muticum is important in maintaining the structure and function of littoral ecosystems, and is used in aquaculture and alginate production, however, little is known about its population genetic attributes. In this study, random amplified polymorphic DNA (RAPD) and inter-simple sequence repeat (ISSR) markers were used to investigate the genetic structure of four populations of S. muticum and one outgroup of S. fusiforme (Harv.) Setchell from Shandong peninsula of China. The selected 24 RAPD primers and 19 ISSR primers amplified 164 loci and 122 loci, respectively. Estimates of genetic diversity with different indicators (P%, percentage of polymorphic loci; H, the expected heterozygosity; I, Shannon's information index) revealed low or moderate level of genetic variations within each S. muticum population, and a high level of genetic differentiations were determined with pairwise unbiased genetic distance (D) and fixation index (F-ST ) among the populations. The Mantel test showed that two types of matrices of D and F-ST were highly correlated whether from RAPD (r = 0.9706, P = 0.009) or ISSR data (r = 0.9161, P = 0.009). Analysis of molecular variance (AMOVA) was conducted to apportion the variations among and within the S. muticum populations. It indicated that variations among populations were higher than those within populations, being 55.82% verse 44.18% by RAPD and 55.21% verse 44.79% by ISSR, respectively. Furthermore, the Mantel test suggested that genetic differentiations among populations were related to the geographical distances (r > 0.6), namely, conformed to the IBD (isolation by distance) model, as expected from UPGMA (unweighted pair group method with arithmetic averages) cluster analysis. On the whole, the high genetic structuring among the four S. muticum populations along the distant locations was clearly indicated in RAPD and ISSR analyses (r > 0.9, P < 0.05) in our study.

Population genetic structure of Sargassum thunbergii (Fucales, Phaeophyta) detected by RAPD and ISSR markers

Genetic variation of four populations of Sargassum thunbergii (Mert.) O. Kuntze and one outgroup of S. fusiforme (Harv.) Setchell from Shandong peninsula of China was studied with random amplified polymorphic DNA (RAPD) and inter-simple sequence repeat (ISSR) markers. A total of 28 RAPD primers and 19 ISSR primers were amplified, showing 174 loci and 125 loci, respectively. Calculation of genetic diversity with different indicators (P%, percentage of polymorphic loci; H, the expected heterozygosity; I, Shannon's information index) revealed low or moderate levels of genetic variations within each S. thunbergii population. High genetic differentiations were determined with pairwise Nei's unbiased genetic distance (D) and fixation index (F-ST) between the populations. The Mantel test showed that two types of matrices of D and FST were highly correlated, whether from RAPD or ISSR data, r=0.9310 (P = 0.008) and 0.9313 (P=0.009) respectively. Analysis of molecular variance (AMOVA) was used to apportion the variations between and within the S. thunbergii populations. It indicated that the variations among populations were higher than those within populations, being 57.57% versus 42.43% by RAPD and 59.52% versus 40.08% by ISSR, respectively. Furthermore, the Mantel test suggested that the genetic differentiations between the four populations were related to the geographical distances (r > 0.5), i.e., they conformed to the IBD (isolation by distance) model, as expected from UPGMA (unweighted pair group method with arithmetic averages) cluster analysis. As a whole, the high genetic structuring between the four S. thunbergii populations along distant locations was clearly indicated in the RAPD and ISSR analyses (r > 0.8) in our study.

The genetic analysis and germplasm identification of the gametophytes of Undaria pinnatifida (Phaeophyceae) with RAPD method

Eleven pairs of Undaria pinnatifida (Harv.) Suringar gametophytes were identified with random amplified polymorphic DNA (RAPD) technique. After screening 100 primers, 20 ten-base primers were determined for the RAPD analysis. A total of 312 polymorphic loci were obtained, of which 97.7% were polymorphic. The primer S198 was found to distinguish all the selected Undaria pinnatifida gametophytes. The genetic distances between each two of the twenty-two U. pinnatifida gametophytes ranged from 0.080 to 0.428, while the distances to the Laminaria was 0.497 on average. After reexamination, two sequences characterized amplification region (SCAR) markers were successfully converted, which could be applied to U. pinnatifida germplasm identification. All these results demonstrated the feasibility of applying RAPD markers to germplasm characterization and identification of U. pinnatifida gametophytes, and to provide a molecular basis for Undaria breeding.

牛血清白蛋白在锁阳RAPD分析中的作用

[目的]为了研究牛血清白蛋白（BSA）在RAPD分析技术中的作用。[方法]通过锁阳RAPD分析中添加BSA,观察其对RAPD扩增的改善情况。[结果]结果表明,在锁阳RAPD分析过程中,添加BSA可显著改善锁阳的PCR扩增效果,并降低Taq酶的用量,BSA最佳使用浓度为2μg/μl。[结论]添加BSA以改善植物RAPD分析的方法是可行的;该研究为BSA在RAPD分析技术中的应用提供依据。

应用RAPD标记研究不同生态区谷子品种的遗传差异

应用RAPD标记对19份国内不同生态区的谷子品种的遗传变异进行了研究。结果表明：分子水平上，不同生态区的谷子品种存在一定的遗传差异，但遗传差异程度并不高。11个随机引物共扩增出54条多态性带，不同引物扩增的带数差异较大，每个引物可扩增2～8条多态性带，平均每个引物扩增出4.91条多态性带。引物1050扩增的多态性带最多（8条）。聚类结果表明，基于RAPD标记分析的遗传聚类群与生态类型有很大的一致性。