A new topological index for the Changchun institute of applied chemistry C-13 NMR information system

A method to assign a single number representation for each atom (node) in a molecular graph, Atomic IDentification (AID) number, is proposed based on the counts of weighted paths terminated on that atom. Then, a new topological index, Molecular IDentification (MID) number is developed from AID. The MID is tested systematically, over half a million of structures are examined, and MID shows high discrimination for various structural isomers. Thus it can be used for documentation in the Changchun Institute of Chemistry C-13 NMR information system.

THE CATALYTIC BEHAVIOR AND REACTION-MECHANISM OF THE BI-CE-O SYSTEM CATALYSTS IN THE OXIDATIVE DEHYDROAROMATIZATION OF PROPYLENE

Oxidative dehydroaromatization of propylene was investigated by the pulse technique over two kinds of single oxide catalysts. With the Bi2O3 catalyst, the main dimer product was 1,5-hexadiene, and the dimerization activity was stable to pulse number even if the catalyst was partly reduced to the bulk. With the CeO2 catalyst, benzene was mainly formed instead of 1,5-hexadiene, but the activity decreased rapidly with increasing pulse number, indicating that only the lattice oxygen near the catalyst surface could be used for oxidative dimerization and the further aromatization. The Bi-Ce-O system catalyst was found in this study to give higher aromatization activity and showed better stability, compared to the Bi-Sn-O catalyst. Although the Bi-Ce-O catalyst was only a mixture of the two component oxides from X-ray diffraction analysis, there was a significant combination effect on the selectivity to benzene. The highest and the most stable selectivity of benzene was obtained at Bi/Ce = 1. In the TPD spectrum of Bi-Ce-O catalyst, there are not only the lattice oxygen (beta-oxygen) over 620-degrees-C due to the reduction of Bi2O3, but also a great deal of the alpha-oxygen desorbed about 400-degrees-C, which is considered the absorbed oxygen in the bulk. This absorbed oxygen could probably be a compensation of the lattice oxygen through the route of gaseous --> absorbed --> lattice oxygen in the binary catalyst system. By the kinetic study on the Bi-Ce-O catalyst, the dimer formation rate was the first-order with respect to the partial pressure of propylene and zero-order of oxygen. Although detail investigation would be made further, it was considered that the complete oxidation of propylene would mainly take place parallelly on some different sites, and the rate-determining step of propylene dimerization occurred probably between an adosrbed propylene and a gaseous one by an Eley-Rideal type mechanism.

Genome-wide analysis of restriction-modification system in unicellular and filamentous cyanobacteria

Cyanobacteria are an ancient group of gram-negative bacteria with strong genome size variation ranging from 1.6 to 9.1 Mb. Here, we first retrieved all the putative restriction-modification (RM) genes in the draft genome of Spirulina and then performed a range of comparative and bioinformatic analyses on RM genes from unicellular and filamentous cyanobacterial genomes. We have identified 6 gene clusters containing putative Type I RMs and 11 putative Type II RMs or the solitary methyltransferases (MTases). RT-PCR analysis reveals that 6 of 18 MTases are not expressed in Spirulina, whereas one hsdM gene, with a mutated cognate hsdS, was detected to be expressed. Our results indicate that the number of RM genes in filamentous cyanobacteria is significantly higher than in unicellular species, and this expansion of RM systems in filamentous cyanobacteria may be related to their wide range of ecological tolerance. Furthermore, a coevolutionary pattern is found between hsdM and hsdR, with a large number of site pairs positively or negatively correlated, indicating the functional importance of these pairing interactions between their tertiary structures. No evidence for positive selection is found for the majority of RMs, e. g., hsdM, hsdS, hsdR, and Type II restriction endonuclease gene families, while a group of MTases exhibit a remarkable signature of adaptive evolution. Sites and genes identified here to have been under positive selection would provide targets for further research on their structural and functional evaluations.

Genome-wide analysis of restriction-modification system in unicellular and filamentous cyanobacteria

Cyanobacteria are an ancient group of gram-negative bacteria with strong genome size variation ranging from 1.6 to 9.1 Mb. Here, we first retrieved all the putative restriction-modification (RM) genes in the draft genome of Spirulina and then performed a range of comparative and bioinformatic analyses on RM genes from unicellular and filamentous cyanobacterial genomes. We have identified 6 gene clusters containing putative Type I RMs and 11 putative Type II RMs or the solitary methyltransferases (MTases). RT-PCR analysis reveals that 6 of 18 MTases are not expressed in Spirulina, whereas one hsdM gene, with a mutated cognate hsdS, was detected to be expressed. Our results indicate that the number of RM genes in filamentous cyanobacteria is significantly higher than in unicellular species, and this expansion of RM systems in filamentous cyanobacteria may be related to their wide range of ecological tolerance. Furthermore, a coevolutionary pattern is found between hsdM and hsdR, with a large number of site pairs positively or negatively correlated, indicating the functional importance of these pairing interactions between their tertiary structures. No evidence for positive selection is found for the majority of RMs, e. g., hsdM, hsdS, hsdR, and Type II restriction endonuclease gene families, while a group of MTases exhibit a remarkable signature of adaptive evolution. Sites and genes identified here to have been under positive selection would provide targets for further research on their structural and functional evaluations.