中国横断山区裂腹鱼亚科(Schizothoracinae)部分类群的系统分类和谱系地理学研究

论文以线粒体细胞色素b 基因对裂腹鱼属鱼类的两个分布广泛的物种 (灰裂腹鱼Schizothorax griseus 和光唇裂腹鱼Schizothorax lissolabiatus)进行了谱系地理学研究；对灰裂腹鱼进行了物种分化研究；对光唇裂腹鱼进行了地理变异研究；并进一步对横断山区分布的裂腹鱼属鱼类进行了谱系地理学研究；整理了中国境内伊洛瓦底江水系分布的裂腹鱼属鱼类。对灰裂腹鱼和光唇裂腹鱼的谱系地理学研究结果表明：1、来自不同水系的灰裂腹鱼和光唇裂腹鱼个体间存在明显的遗传差异，两个物种各自不呈单系；灰裂腹鱼和光唇裂腹鱼同域分布的个体有共享单倍型的情况；北盘江、牛栏江、乌江和元江的个体在系统树上有较近的亲缘关系。2、对灰裂腹鱼进行了重新描述并对来自于不同水系被认为是灰裂腹鱼的标本进行了查看，结果表明：灰裂腹鱼分布于金沙江下游及其支流；分布于澜沧江的，过去被认为是灰裂腹鱼的种类代表裂腹鱼属鱼类一新种——裸腹裂腹鱼Schizothorax nudiventris sp. nov.；分布于南盘江的过去被认为是灰裂腹鱼的种类代表一新种——异鳔裂腹鱼Schizothorax heterophysallidos sp. nov.；分布于北盘江的过去被认为是灰裂腹鱼的种类代表一新种——北盘裂腹鱼Schizothorax beipanensis sp. nov.。3、本研究还陈述了光唇裂腹鱼的各地理种群(怒江、澜沧江、元江、南盘江和北盘江)部分形态特征以及差异情况。主成分分析结果表明：怒江和澜沧江个体在形态上无差异；澜沧江上游和下游个体在部分特征上表现出一定程度上的渐变异。4、横断山区裂腹鱼属鱼类的谱系地理学研究表明：系统树不支持裂腹鱼属鱼类亚属的划分；本属不同种类Cyt b 基因序列的最大遗传距离为11.2%；怒江和澜沧江的个体以较高的支持率聚成一单系；伊洛瓦底江水系与雅鲁藏布江的个体以较高的支持率聚成一单系；金沙江流域与元江、南盘江、北盘江的个体聚成一单系；晚中新世(9.5 Ma) 和早上新世(3.6 Ma)的青藏高原的强烈隆升可能是横断山区裂腹鱼属鱼类物种分化的重要时间；裂腹鱼属鱼类的演化是历史生物地理学过程中隔离分化假说的一个实例；横断山区的古河道向南入海可能有3 个方向，它们是雅鲁藏布-伊洛瓦底江方向、怒江-澜沧江方向、金沙江及其支流-红河方向(包括南盘江-红河)；不支持长江第一湾为袭夺湾的观点，古金沙江入古红河可能不经剑川-洱海一线；滇中、滇东北水系发育复杂。5、本研究还对中国境内伊洛瓦底江水系分布的裂腹鱼属鱼类进行了整理。认为本地区裂腹鱼属鱼类共8 种(包括2 新种)：南方裂腹鱼Schizothorax meridionalis、奇异裂腹鱼Schizothorax heteri sp. nov.、独龙裂腹鱼Schizothorax dulongensis、软刺裂腹鱼Schizothorax malacathus、少鳞裂腹鱼 Schizothorax oligolepis、吸口裂腹鱼Schizothorax myzostomus、细身裂腹鱼 Schizothorax elongatus 和白体裂腹鱼Schizothorax leukus sp. nov.。

Nanoparticle-amplified Surface Plasmon Resonance Study of Protein Conformational Change at Interface

This paper reports the study of protein conformational change by Au nanoparticles (AUNPs)-amplified surface plasmon resonance (SPR) spectroscopy. Taking cytochrome c (Cyt c) as an example, this paper gives a detailed description of the construction of metal-protein-metal sandwich nanostructure consisting of an Au film underlayer, a cytochrome c intermediate layer and an AuNPs upper layer. The incorporation of AuNPs into SPR biosensing results in increased SPR sensitivity to protein conformational change as demonstrated by acid denaturation of Cyt c. It suggests the conformational change of surface-confined Cyt c leads to the distance and electromagnetic coupling variations of Au film-AuNPs.

A bifunctional structure for the direct electron transfer of Cytochrome c

It was found that silicon dioxide (SiO2) nanoparticles modified onto glassy carbon (GC) electrode exhibited a dramatic promotion on the direct electron transfer of Cytochrome c (Cyt c). The corresponding mechanism was discussed based on the electrochemical characteristics and a spatial geometrical model of the bifunctional structure. The model could offer insight to the study of biosensors and bioreactors without chemical mediator and serve as a basis for their fabrication. (c) 2008 Elsevier Ltd. All rights reserved.

Surface plasmon resonance and electrochemistry characterization of layer-by-layer self-assembled DNA and Zr4+ thin films, and their interaction with cytochrome c

Through electrostatic layer-by-layer (LbL) assembly, negatively charged calf thymus double stranded DNA (CTds-DNA), and positively charged Zr4+ ions were alternately deposited on gold substrate modified with chemisorbed cysteamine. Thus-prepared three-dimensional DNA networks were characterized by surface plasmon resonance (SPR) spectroscopy, X-ray photoelectron spectroscopy (XPS) and infrared reflection-absorption spectroscopy (IR-RAS). SPR spectroscopy indicates that the effective thickness of DNA monolayer in the (DNA/Zr4+), bilayer was 1.5 +/- 0.1 nm, which corresponds to the surface coverage of 79% of its full packed monolayer. At the same time, a linear increase of film thickness with increasing number of layers was also confirmed by SPR characterizations. The data of XPS and IR-RAS show that Zr4+ ions interact with both the phosphate groups and nitrogenous bases of DNA and load into the framework of DNA. Furthermore, the interactions between this composite film and heme protein cytochrome c (Cyt c) were investigated by SPR spectroscopy and electrochemistry.

Surface plasmon resonance and electrochemistry characterization of layer-by-layer self-assembled DNA and Zr4+ thin films, and their interaction with cytochrome c

Through electrostatic layer-by-layer (LbL) assembly, negatively charged calf thymus double stranded DNA (CTds-DNA), and positively charged Zr4+ ions were alternately deposited on gold substrate modified with chemisorbed cysteamine. Thus-prepared three-dimensional DNA networks were characterized by surface plasmon resonance (SPR) spectroscopy, X-ray photoelectron spectroscopy (XPS) and infrared reflection-absorption spectroscopy (IR-RAS). SPR spectroscopy indicates that the effective thickness of DNA monolayer in the (DNA/Zr4+), bilayer was 1.5 +/- 0.1 nm, which corresponds to the surface coverage of 79% of its full packed monolayer. At the same time, a linear increase of film thickness with increasing number of layers was also confirmed by SPR characterizations. The data of XPS and IR-RAS show that Zr4+ ions interact with both the phosphate groups and nitrogenous bases of DNA and load into the framework of DNA. Furthermore, the interactions between this composite film and heme protein cytochrome c (Cyt c) were investigated by SPR spectroscopy and electrochemistry. Compared with the adsorption of Cyt c on DNA monolayer, this composite multilayer film can obviously enhance the amount of immobilized Cyt c confirmed by SPR reflectivity-incident angle (R-theta) curves.

Direct electrochemistry behavior of Cytochrome c on silicon dioxide nanoparticles-modified electrode

A newfangled direct electrochemistry behavior of Cytochrome c (Cyt c) was found on glassy carbon (GC) electrode modified with the silicon dioxide (SiO2) nanoparticles by physical adsorption. A pair of stable and well-defined redox peaks of Cyt c ' quasi-reversible electrochemical reaction were obtained with a heterogeneous electron transfer rate constant of 1.66 x 10(-3) cm/s and a formal potential of 0.069 V (vs. Ag/AgCl) (0.263 V versus NHE) in 0.1 mol/L pH 6.8 PBS. Both the size and the amount of SiO2 nanoparticles could influence the electron transfer between Cyt c and the electrode. Electrostatic interaction which is between the negative nanoparticle surface and positively charged amino acid residues on the Cyt c surface is of importance for the stability and reproducibility toward the direct electron transfer of Cyt c. It is suggested that the modification of SiO2 nanoparticles proposes a novel approach to realize the direct electrochemistry of proteins.

Direct electron transfer between cytochrome c and a gold nanoparticles modified electrode

Quasi-reversible and direct electrochemistry of cytochrome c (cyt. c) has been obtained at a novel electrochemical interface constructed by self-assembling gold nanoparticles (GNPs) onto a three-dimensional silica gel network, without polishing or any modification of the surface. A cleaned gold electrode was first immersed in a hydrolyzed sol of the precursor (3-mercaptopropyl)-trimethoxysilane to assemble three-dimensional silica gel, then the GNPs were chemisorbed onto the thiol groups of the sol-gel network and modified the kinetic barrier of this self-assembled silicate film. Cyclic voltammetry and AC impendance spectroscopy were performed to evaluate electrochemical properties of the as prepared interface. These nanoparticle inhibits the adsorption of cyt. c onto bare electrode and acts as a bridge of electron transfer between protein and electrode.

细胞色素c在纳米氧化铝模板修饰电极上的直接电化学

细胞色素c(Cytochrome c, Cyt c)是生物体中最常见的氧化-还原蛋白质, 研究其在电极上的直接电化学, 对于理解和认识生命体内的电子转移机制具有重要意义[1]. Cyt c与裸固体电极表面的直接接触通常会使其失去生物活性, 因此, Cyt c的电化学研究常借助于媒介体以实现其与电极之间的电子转移[2]. 纳米金属氧化物模板的表面积大且化学和光化学性质稳定, 被广泛应用于太阳能电池[3]和金属沉积[4]等领域. 本文研究氧化铝(AAO)模板对4,4′-二硫二吡啶存在下Cyt c直接电化学促进作用.

Surface-enhanced resonance Raman spectroscopy and spectroscopy study of redox-induced conformational equilibrium of cytochrome c adsorbed on DNA-modified metal electrode

The redox-induced conformational equilibrium of cytochrome c (cyt c) adsorbed on DNA-modified metal electrode and the interaction mechanism of DNA with cyt c have been studied by electrochemical, spectroscopic and spectroelectrochemical techniques. The results indicate that the external electric field induces potential-dependent coordination equilibrium of the adsorbed cyt c between its oxidized state (with native six-coordinate low-spin and non-native five-coordinate high-spin heme configuration) and its reduced state (with native six-coordinate low-spin heme configuration) on DNA-modified metal electrode. The strong interactions between DNA and cyt c induce the self-aggregation of cyt c adsorbed on DNA. The orientational distribution of cyt c adsorbed on DNA-modified metal electrode is potential-dependent, which results in the deviation from an ideal Nernstian behavior of the adsorbed cyt c at high electrode potentials. The electric-field-induced increase in the activation barrier of proton-transfer steps attributed to the rearrangement of the hydrogen bond network and the self-aggregation of cyt c upon adsorption on DNA-modified electrode strongly decrease the interfacial electron transfer rate.

Syntheses of fully sulfonated polyaniline nano-networks and its application to the direct electrochemistry of cytochrome c

Fully sulfonated polyaniline nano-particles, nano-fibrils and nano-networks have been achieved for the first time by electrochemical homopolymerization of orthanilic acid using a three-step electrochemical deposition procedure in a mixed solvent of acetonitrile (ACN) and water. The diameter of the uniform nano-particles is about 60nm, and the nano-fibrils can be organized in two-dimensional (21)) or three-dimensional (313) non-periodic networks with good electrical contact. Average distance between contacts is about 850 and 600 nm for a 2D and 3D system, respectively. The details of the poly(orthanilic acid) (POA) nano-structure were examined with a field emission scanning electron microscope (SEM). The structure and properties of POA were characterized with FTIR, UV-vis and electrochemical methods. The 3D POA nano-networks coated platinum electrode gave a direct electrochemical behavior of horse heart cytochrome c (Cyt c) immobilized on this electrode surface, a pair of well-defined redox waves with formal potential (E-ol) of -0.032 V (versus Ag/AgCl) was achieved. The interaction between Cyt c and POA makes the formal potential shift negatively compared to that of Cyt c in solution. Spectrophotometric and electrochemical methods were used to investigate the interaction of Cyt c with POA.

The electrochemistry of cytochrome c at a viologen-thiol self-assembled monolayer

At the self-assembled monolayer (SAM) of a thiol-functionalized viologen modified gold electrode, cytochrome c (cyt c) exhibits a quasi-reversible electrochemical reaction. The heterogeneous electron transfer rate constant of cyt c in 0.1 mol/L phosphate buffer solution(pH 6.96) is 0.164 cm.s(-1) at 500 mV/s. The adsorbed cyt c on the viologen SAM forms a closely packed monolayer, whose average electron transfer rate is 4.85 s(-1) in the scan range of 50 to 500 mV/s. These results suggest that the SAM of viologen-thiol is a relatively stable, ordered and well-behaved monolayer from an electrochemical standpoint and it promotes the electron transfer process of biomolecules on electrode surface well.

Scanning tunnelling microscopy observation of cytochrome-c denaturation induced by bromopyrogal red on highly oriented pyrolytic graphite

The denaturation of cytochrome-e (cyt-c) induced by bromopyrogal red (BPR) was studied by scanning tunnelling microscopy (STM) on the electrochemically pretreated highly oriented pyrolytic graphite (HOPG) surface. STM images reveal that denatured cyt-c molecules exist in variable states including aggregates, globular compact, partially unfolded and combined with BPR molecule. The apparently low image contrast of denatured cyt-c observed in this experiment comparing to that of native cyt-c molecules, and the relative low image contrast of the unfolded part comparing with the compact globular part, are ascribed to the unfavourable tunnelling paths for the conformational variations of denatured cyt-c molecules. (C) 1997 Elsevier Science B.V.

Direct electron transfer to cytochrome c oxidase in self-assembled monolayers on gold electrodes

The monolayer of cytochrome c oxidase maintaining physiological activity and attached covalently to the self-assembled monolayers of 3-mercaptopropionic acid (MPA) on a gold electrode was obtained. The results of cyclic voltammetry show that direct electron transfer between cytochrome c oxidase and the electrode surface is a fast and diffusionless process. MPA has a dual role as both electrode modifier and the bridging molecule which: keeps cytochrome c oxidase at an appropriate orientation without denaturation and enables direct electron transfer between the protein and the modified electrode. Immobilized cytochrome c oxidase exhibits biphasic phenomena between the concentration of the electrolyte and the normal potentials; meanwhile its electrochemical behavior is also influenced by the buffer components. The quasi-reversible electron transfer process of cytochrome c oxidase with formal potential 385 mV vs. SHE in 5mM phosphate buffer solution (pH 6.4) corresponds to the redox reaction of cyt a(3) in cytochrome c oxidase, and the heterogeneous electron transfer rate constant obtained is 1.56 s(-1). By cyclic voltammetry measurements, it was observed that oxidation and reduction of cytochrome c in solution were catalyzed by the immobilized cytochrome c oxidase. This cytochrome c oxidase/MPA/Au system provides a good mimetic model to study the physiological functions of membrane-associated enzymes and hopefully to build a third-generation biosensor without using a mediator.

用同步荧光光谱法定量测定细胞色素C

采用同步荧光光谱技术研究了细胞色素C(Cyt C)的同步荧光光谱特性,发现在波长差Δλ=20nm时表现为酪氨酸(Tyr)残基的荧光峰,在Δλ=80nm时为色氨酸(Try)残基的荧光峰。同时考察了浓度对Cyt C同步荧光光谱的影响,为Cyt C的定量测定打下基础。

聚吡咯-亚甲蓝薄膜修饰电极对细胞色素c直接氧化还原的电催化

蛋白质生物大分子在电极上的电子转移过程是生物电化学领域的重要研究课题。电化学家认为以蛋白质-电极之间的电子转移过程模拟生物体中蛋白质-蛋白质之间的电子转移有可能提供某些解释生物体中电子传递机理的信息。细胞色素c(Cyt.c)是一种典型的传递电子的蛋白质,其辅基血红素铁为氧化还原活性中心。