Characterizing a monotopic membrane enzyme. Biochemical, enzymatic and crystallization studies on Aquifex aeolicus sulfide:quinone oxidoreductase

Monotopic membrane proteins are membrane proteins that interact with only one leaflet of the lipid bilayer and do not possess transmembrane spanning segments. They are endowed with important physiological functions but until now only few of them have been studied. Here we present a detailed biochemical, enzymatic and crystallographic characterization of the monotopic membrane protein sulfide:quinone oxidoreductase. Sulfide:quinone oxidoreductase is a ubiquitous enzyme involved in sulfide detoxification, in sulfide-dependent respiration and photosynthesis, and in heavy metal tolerance. It may also play a crucial role in mammals, including humans, because sulfide acts as a neurotransmitter in these organisms. We isolated and purified sulfide:quinone oxidoreductase from the native membranes of the hyperthermophilic bacterium Aquifex aeolicus. We studied the pure and solubilized enzyme by denaturing and non-denaturing polyacrylamide electrophoresis, size-exclusion chromatography, cross-linking, analytical ultracentrifugation, visible and ultraviolet spectroscopy, mass spectrometry and electron microscopy. Additionally, we report the characterization of its enzymatic activity before and after crystallization. Finally, we discuss the crystallization of sulfide:quinone oxidoreductase in respect to its membrane topology and we propose a classification of monotopic membrane protein crystal lattices. Our data support and complement an earlier description of the three-dimensional structure of A. aeolicus sulfide:quinone oxidoreductase (M. Marcia, U. Ermler, G. Peng, H. Michel, Proc Natl Acad Sci USA, 106 (2009) 9625-9630) and may serve as a reference for further studies on monotopic membrane proteins. (C) 2010 Elsevier B.V. All rights reserved.

Effects of buoyancy on Langmuir circulation

Based on the Navier-Stokes equation, an equation describing the Langmuir circulation is derived by a perturbation method when the influences of Coriolis force and buoyancy force are both considered. The approach used in the analysis is similar to the works carried out by Craik and Leibovich [J. Fluid Mech. 73 (1976) 401], Leibovich [J. Fluid Mech. 79 (1977) 715] and Huang [J. Fluid Mech. 91 (1979) 191]. Potential applications of the equation proposed are discussed in the area of Antarctic circumpolar current.

水葫芦苗(Halerpestes cymbalaris)的生长特征研究

以调查统计的方法在中国科学院海北定位站研究了高寒湿地植物水葫芦苗无性系的生长特征、形态特征以及能量分配规律.结果表明:匍匐茎只有1条的水葫芦苗最多,占35.29%,匍匐茎有4条的水葫芦苗只占 8.82%.同一水葫芦苗无性系中,随着匍匐茎数目的增多,分株数、间隔子数、茎总长和匍匐茎比节间重变小.分株一般在第一级最高,末级较低;第1条匍匐茎的间隔子较长.随水葫芦苗匍匐茎数目的增多,用于无性繁殖的分株干重比例逐渐增加,用于有性繁殖的花的干重比例下降.水葫芦苗无性系这种生长特征、形态特征以及能量分配规律是其生物-生态学特性和所处高寒湿地 生境共同决定的.

中国北方风成堆积的风化作用与环境变迁—U-Th、~(10)Be及元素地球化学的研究

The surface of the Earth is continuously undergoing changes as a result of weathering-erosion, plate tectonics and volcanic processes. Continental weathering-erosion with its complex rock-water interactions is the central process of global biochemical cycling of elements, and affects the long-term ocean atmosphere budget of carbon dioxide both through the consumption of carbonic acid during silicate weathering and through changes in the weathering and burial rates of organic carbon. Rates of the weathering-erosion depend on a variety of factors, in particular rock properties and chemical composition, climate (especially rainfall), structure, and elevation. They are quite variable on a regional scale. Thus, environmental changes in a region could be indicated by the history of weathering-erosion in the region. Recent attention has focused on increased silicate weathering of tectonically uplifted areas in the India-Asia collision zone as a possible cause for falling atmospheric CO_2 levels in the Cenozoic era. The wind blown dust deposits in the Loess Plateau is derived from the arid and semiarid regions in northwestern China, in turn, where the deposits have been derived from the Qinghai-Xizang Plateau and the high mountains around. Therefore, geochemistry of the wind blown loess-paleosol and red clay sequences may provide insight both to paleoenvironmental changes on the Loess Plateau, and to the uplift and weathering-erosion histories of the Qinghai-Xizang Plateau. In this paper, uranium-thorium series nuclides and cosmogenic ~(10)Be have been employed as tracers of weathering intensities and histories of the dust sediments in the Loess Plateau. Major elements, such as Na, Al, Fe etc., are also used to estimate degree of chemical alteration of the dust sediments and to rebuild the history of weathering on the Loess Plateau. First of all, using a low-level HPGe γ-ray detector, we measured U and Th series nuclides in 170 loess and paleosol samples from five sites in the Loess Plateau, going back 2.6 Ma. The results show that ~(238)U activities are disequilibrium with its daughter nuclide ~(230)Th in young loess-paleosol sequence, indicating that weathering was happened both in dust deposition site and in dust source regions. Using concentrations of ~(238)U and ~(232)Th in the samples, we estimated the amounts of ~(238)U leached out of from paleosols due to weathering. Further, based on analyses of ~(230)Th in paleosols deposited in the past ca. 140 ka, we determined when the paleosols weathered in the source regions. We conclude that most of the weathering in the dust-source regions may have occurred during the interglacials before dust deposition.

渤海湾地区末次冰期古环境

The loess-paleosol sequence in China is one of the best archives for studying paleoenvironmental and paleoclimatic processes. The loess deposits in the coast of the Bohai Sea are suitable for the study of aridification in the northern China during glacial periods (fig.2-1). In this paper, stratigraphy was correlated by using magnetic susceptibility, grain size, and thermoluminence (TL) and accelerater mass spectrometer (AMS) ~(14)C ages. Based on the loess records, an interpretation has been made for paleoenvironmental changes on the coast of the Bohai Sea during the last glacials. The results of magnetic susceptibility, grain size, biostratigraphy, TL and ~(14)C dating, suggest that the loess-paleosol sequence in the coast of the Bohai Sea is discontinuous. The loess deposits correlated with the marine δ~(18)O stage 2 are usually absent in some profiles. Also, the thickness of the loess deposits in the same period varied significantly in different sections. In the coast of the Bohai Sea, the higher magnetic susceptibility corresponds to the finer grain size, consistent with the results of the Loess Plateau. It is indicated that the changes in magnetic susceptibility and grain size may record the paleoclimatic fluctuations of the last glacial. Although the loess deposits during the last glacial have been slightly altered by slope runoff, they have still remained main characters as the representative loess deposits of the Loess Plateau. During the last glacial, the less accumulation rate in the coast of the Bohai Sea is similar to that of the desert-loess transition zone in the northwestern Loess Plateau, and the all section contain high concentrations of sand (>60μm), indicate that the aridification in the Bohai Sea occurred during the glacial. But the changes in sand content of loess deposits along a north-south transect of the Bohai Sea and the changes of magnetic susceptibility implicate that desertification might not occur in the shelf of the Bohai Sea during the last glacial. The frequent fluctuations of summer monsoon during the marine δ~(18)O stage 4 are demonstrated by magnetic susceptibility, frequency-dependent susceptibility and the abundance of foraminifera. 46 genera, 71 species of foraminifera were identified from 138 loess samples. Almost all of the foraminifera are present in the last glacial loess, but the distribution patterns of foraminifera show significant temporal changes. The results of magnetic susceptibility, grain size and XRD indicate that not only sea-level changes had influences on foraminifera abundance, but also variations in sediment flux by rivers when sea-level drops might control the abundance of foraminifera. In addition, the diversity and exquitability of the foraminifera suggest that the frequent fluctuations of foraminifera fossil abundance during the marine δ~(18)O stages could be partly attributed to leaching. In summary, the changes in foraminifera of abundance related to the paleoclimatic variations, and the aridification extends to the coast of the eastern China during the last glacial.