Origin of mitochondrial DNA diversity of domestic yaks

Background: The domestication of plants and animals was extremely important anthropologically. Previous studies have revealed a general tendency for populations of livestock species to include deeply divergent maternal lineages, indicating that they were domesticated in multiple, independent events from genetically discrete wild populations. However, in water buffalo, there are suggestions that a similar deep maternal bifurcation may have originated from a single population. These hypotheses have rarely been rigorously tested because of a lack of sufficient wild samples. To investigate the origin of the domestic yak (Poephagus grunnies), we analyzed 637 bp of maternal inherited mtDNA from 13 wild yaks (including eight wild yaks from a small population in west Qinghai) and 250 domesticated yaks from major herding regions.Results: The domestic yak populations had two deeply divergent phylogenetic groups with a divergence time of > 100,000 yrs BP. We here show that haplotypes clustering with two deeply divergent maternal lineages in domesticated yaks occur in a single, small, wild population. This finding suggests that all domestic yaks are derived from a single wild gene pool. However, there is no clear correlation of the mtDNA phylogenetic clades and the 10 morphological types of sampled yaks indicating that the latter diversified recently. Relatively high diversity was found in Qinghai and Tibet around the current wild distribution, in accordance with previous suggestions that the earliest domestications occurred in this region. Conventional molecular clock estimation led to an unrealistic early dating of the start of the domestication. However, Bayesian estimation of the coalescence time allowing a relaxation of the mutation rateConclusion: The information gathered here and the previous studies of other animals show that the demographic histories of domestication of livestock species were highly diverse despite the common general feature of deeply divergent maternal lineages. The results further suggest that domestication of local wild prey ungulate animals was a common occurrence during the development of human civilization following the postglacial colonization in different locations of the world, including the high, arid Qinghai-Tibetan Plateau.

Burrowing rodents as ecosystem engineers: the ecology and management of plateau zokors Myospalax fontanierii in alpine meadow ecosystems on the Tibetan Plateau

1. Plateau zokors, Myospalax fontanierii, are the only subterranean herbivores on the Tibetan plateau of China. Although the population biology of plateau zokors has been studied for many years, the interactions between zokors and plants, especially for the maintenance and structure of ecological communities, have been poorly recognized. In the past, plateau zokors have been traditionally viewed as pests, competitors with cattle, and agents of soil erosion, thus eradication programmes have been carried out by local governments and farmers. Zokors are also widely and heavily exploited for their use in traditional Chinese medicine.2. Like other fossorial animals, such as pocket gophers Geomys spp. and prairie dogs Cynomys spp. in similar ecosystems, zokors may act to increase local environmental heterogeneity at the landscape level, aid in the formation, aeration and mixing of soil, and enhance infiltration of water into the soil thus curtailing erosion. The changes that zokors cause in the physical environment, vegetation and soil clearly affect the herbivore food web. Equally, plateau zokors also provide a significant food source for many avian and mammalian predators on the plateau. Zokor control leading to depletion of prey and secondary poisoning may therefore present problems for populations of numerous other animals.3. We highlight the important role plateau zokors play in the Tibetan plateau ecosystem. Plateau zokors should be managed in concert with other comprehensive rangeland treatments to ensure the ecological equilibrium and preservation of native biodiversity, as well as the long-term sustainable use of pastureland by domestic livestock.

RFID系统优化模型与智能算法研究

射频识别技术（Radio Frequency Identification, RFID）作为采集与处理信息的高新技术和信息化标准的基础，被列为本世纪十大重要技术之一。但是，RFID技术的大规模实际应用仍处于探索阶段，RFID系统的应用基础技术还存在着大量尚未解决的关键问题，其中RFID系统优化是RFID技术研究和应用的重要课题。由于RFID系统本身的动态性和不确定性， RFID系统优化面对的一般是非线性、多目标、大规模的复杂优化问题，传统的数学优化算法在处理这些问题时，存在困难。为此，研究新的优化算法成为RFID技术实际应用和理论研究中必须解决的课题。 智能计算方法是求解复杂RFID系统优化问题的一种可供选择的算法。智能计算作为一个新兴领域，其发展已引起了多个学科领域研究人员的关注，目前已经成为人工智能、经济、社会、生物等交叉学科的研究热点和前沿领域。智能计算的各类算法已在传统NP问题求解及诸多实际应用领域中展现出其优异的性能和巨大的发展潜力。 本文旨在对RFID系统的各种优化问题进行深入研究和探讨，面向RFID技术的实际应用需求构建其优化模型，并基于智能计算思想设计能够有效求解这些复杂模型的新型智能优化算法。具体研究内容包括： 首先，进行了RFID读写器网络的调度问题研究。在深入分析RFID网络中读写器冲突类型和成因的基础上，考虑RFID网络中的读写器冲突约束，以最小化系统中的频道数量、时隙分配以及总处理时间建立了RFID读写器网络调度的数学优化模型。从生物学的角度出发提出基于生态捕食模型的改进PSO算法（Particle Swarm Optimizer based on Predator-prey Coevolution, PSOPC），在一定程度上解决了PSO算法在迭代后期随着多样性丧失而陷入局部最优的缺点。应用PSOPC设计了求解RFID读写器网络调度模型的智能求解算法，分别给出算法的求解框架、关键步骤的实现机制。通过在不同规模的RFID读写器网络上进行实例仿真，验证了算法的有效性和模型的正确性。 其次，进行了基于菌群自适应觅食算法RFID网络规划问题的研究。考虑RFID系统在不同应用环境下的系统需求，建立了RFID网络规化的数学模型，其目标函数分别为：RFID网络标签覆盖率的最大化目标函数、RFID读写器冲突的最小化目标函数、RFID网络运行的经济效益最大化目标函数、RFID网络运行的负载平衡目标函数以及同时考虑全局目标的混合目标函数。将自然界生物觅食所采用的自适应搜索策略与细菌的趋化行为和群体感应机制相集成，提出了适合求解复杂RFID网络规划问题的菌群自适应觅食算法（Adaptive Bacterial Foraging Optimization, ABFO）。通过仿真实验基于ABFO算法分别对RFID网络规划模型中的五个目标函数进行了实例求解和分析，测试结果与标准PSO算法和遗传算法进行了比较分析。 再次，进行了基于系统智能方法的RFID网络规划分布式决策模型研究。采用分布式决策的思想建立了RFID网络规划的层次模型，在一定程度上缓解、分散了RFID网络规划问题的复杂性，以解决具有混合变量（包括离散变量和连续变量）的多目标RFID网络规划问题。针对层次模型求解的复杂性，以复杂适应系统理论为指导思想设计了一种新型系统智能优化算法对RFID网络规划的层次模型进行求解。系统智能算法将群体智能中的单层群体系统概念扩展为多层涌现系统，仿真实验表明新提出的算法显著提高了智能计算方法的寻优能力，以及算法的适应性、鲁棒性和平衡性等性能。 最后，进行了RFID网络目标跟踪系统中的数据融合研究。以基于RFID技术的目标定位与跟踪系统为应用背景，提出了基于模糊聚类方法的多RFID读写器数据融合模型框架。通过深入分析蜜蜂采蜜的基本生物学规律，对蜜蜂的个体行为及群体行为进行模拟，提出了一类新型群体智能优化算法-蜂群优化算法（Bee Swarm Optimization, BSO），并将BSO算法嵌入RFID目标定位跟踪系统，作为其模糊聚类的基本算法。仿真研究表明，提出的融合模型能够有效的过滤读写器对跟踪目标的错误监测数据，显著提高目标定位与跟踪的精度。