云南元谋和山西太谷上新世化石木群研究

首次报道了云南元谋盆地（虎跳滩土林、湾堡土林和新华土林）晚上新世的硅化木材植物群和山西太谷盆地晚上新世的炭屑木材植物群，分析了这两个盆地当时的植被、环境和气候，为认识我国西南地区和北方中部地区晚上新世气候变化提供了生物学证据。 1。云南元谋盆地晚上新世沙沟组（相当于钱方等1991元谋组下部一、二段）化石木植物群包括：裸子植物1种，归属于三尖杉科(Cephalotaxaceae)三尖杉属(Cephalotaxus)或红豆杉科(Taxaceae)穗花杉属(Amentotaxus);被子植物11种，分别归属于楝科(Meliaceae)香椿属(Toona)、大戟科(Euphorbiaceae)秋枫属(Bischofia)、榆科(Ulmaceae)榉属(Zelkova)、豆科(Fabaceae)黄檀属(Dalbergia)、壳斗科(Fagaceae)锥属(Castanopsis)、青冈属(Cyclobalanopsis)、 千屈菜科(Lythraceae)紫薇属(Lagerstroemia)、桑科(Moraceae)桑属(Morus)、胡桃科(Juglandaceae)、豆科和壳斗科。其中三尖杉属或穗花杉属、楝科香椿属、豆科黄檀属、壳斗科锥属、青冈属、千屈菜科紫薇属、桑科桑属、胡桃科和壳斗科的化石木在我国为首次报道。依据植物群的组成，当时该盆地周围山地上的森林是以锥属、青冈属和三尖杉属或穗花杉属为主要分子的常绿针阔混交林，盆地内的树木包括楝科香椿属、大戟科秋枫属、豆科和千屈菜科紫薇属等植物;当时的气候为亚热带气候，温暖湿润。与印度同时代植物群相比，元谋植物群不具有典型的热带雨林分子如龙脑香科植物，而在印度晚第三纪则常见热带雨林分子。这种差异可能是因为中印植物区系起源不同，以及地质历史时期青藏高原的隆升造成区域气候分异，从而导致中印古植物区系不同。 2．山西太谷盆地晚上新世小白组化石木植物群包括榆科(Ulmaceae)榆属(Ulmus)、蔷薇科(Rosaceae)李属(Prunus)和桑科柘属(Cudrania)，它们的标本保存为炭屑木材。该化石木群的发现，以及综合通过孢粉学研究得出的古气候研究结果，表明当时当地属于典型的温带气候。化石木清晰的生长轮表明当时气候具明显的季节性。现代生态木材解剖学研究发现温带干旱地区植物群中导管分子壁的螺纹加厚比例较高、且明显。化石木标本导管分子壁具明显的螺纹加厚也表明盆地内为温带的气候类型。孢粉学研究和地层中丰富的石膏层也表明当时气候具有明显的干湿波动，地层中多层炭屑的存在证明了当时气候条件下森林火频繁发生。这些炭屑木材的发现丰富了太谷盆地晚上新世植物群，为古植被重建和古环境恢复提供了新的证据

麻黄属的化石记录及早期多样性

买麻藤纲的系统演化位置数百年来一直是国际植物学界争论的焦点问题。有人认为，买麻藤纲是被子植物的姐妹群，但另有人认为该纲与裸子植物的关系更为密切。尽管存在争议，但是麻黄属（麻黄科）一直被公认为买麻藤纲的基部类群。由于其在植物界中的特殊位置，解剖学、形态和分类学、分子系统学与古植物学等多种学科已经对该属开展了多角度的研究工作。在对买麻藤纲系统发育和演化位置进行研究时，我们意识到麻黄属的历史记录问题不仅是对麻黄属进行其他研究中必须首先解决的关键问题，而且已成为当务之急。而要令人满意的地解决麻黄属的历史记录，必须弄清以下核心问题：①麻黄属的起源时间是什么? ②麻黄属的化石记录怎样? ③早期麻黄植物的多样性怎样? 我们在全世界搜集了麻黄属的全部化石文献，这给我们对该属历史记录进行研究提供了扎实的基础;我们在辽西热河生物群尖山沟组早白垩世地层采集到了保存完好的麻黄化石，这为我们对其历史记录的研究提供了新的材料。 在对该属进行深入的研究后，结合对在中国辽宁省西部尖山沟组早白垩世地层采集到的保存完好的麻黄化石的研究，得出结论如下： (1)麻黄科下原有的似麻黄属和异麻黄属的属征以及模式种的形态特征与麻黄属非常接近。似麻黄属与麻黄属的区别在于二者的时代不同，异麻黄属和麻黄属的差异在于异麻黄属的分枝式样兼具对生和互生。在综合对比后，将似麻黄属和异麻黄属归并入麻黄属中。 (2)根据繁殖器官的特征，对麻黄属下的化石记录进行了整理，结果发现，目前可以确认的麻黄属化石种共有7个，分别是Ephedra chenii (Cao et Wu) Liu, Li et Wang comb. nov., E. antiqua (Heer) Liu, Li et Wang comb. nov., E. xingxuei (Tao et Yang) Liu, Li et Wang comb. nov., E. lanceolata Liu, Ferguson, Li et Wang sp. nov., E. divisa Liu, Ferguson, Li et Wang sp. nov., E. ovata Liu, Ferguson, Li et Wang sp. nov., 以及E. tenera Liu, Li et Wang sp. nov.。其余的种由于性状不明确或缺乏繁殖部分的特征而被暂时搁置一边。 (3)在1.25亿年前，麻黄属在种子单位中苞片的形态、叶片的形态和大小以及叶脉式样等四个方面已经表现出了丰富的多样性。1.25亿年前，麻黄属叶片的最长可达35毫米，最宽可达45毫米，比现代植物的大（最长可达35毫米，最宽可达2毫米）;叶片的叶脉式样中在同时具有现在植物的平行脉和汇聚脉之外，还有分叉脉出现。种子单位中苞片的形态主要为鳞片状和披针形，这比现代植物窄;叶片的形态主要有四种类型（卵形、裂叶、披针形以及鳞片状），比现代植物中的两种类型（披针形和鳞片状）复杂。将1.25亿年前多样的麻黄属与现代麻黄植物对比，表明在过去的1.25亿年期间，麻黄属的演化过程为：性状的消失和物种的灭绝。 (4)对于麻黄属的起源时间，对现代麻黄植物叶绿体rbcL基因序列的分析得出的时间为8-32 百万年，而近期基于rbcL、rps4 以及ITS序列和麻黄属化石种子以及麻黄粉的分析，得出麻黄属的起源时间为1.1亿年。我们发现的保存完好的化石标本给出的可靠的直接证据表明，麻黄属植物早在1.25亿年前已经出现，而且当时已经表现出了丰富的多样性，说明麻黄属的起源时间可能会更早。

河北中新世球果和果实及云南、浙江上新世化石木研究

本研究以河北围场县广发永化石点早中新世地层中的球果和果实、浙江宁海县杜岙化石点早上新世地层中的半矿化化石木、云南寻甸县金所和先锋化石点晚上新世地层中的丝炭和褐煤化木材为研究对象，对这三个化石点数百个植物大化石的形态或解剖结构进行了详细研究，鉴定出6个新的化石种，4个新记录种，7个未定种;其中2个化石属为我国新记录。根据其结构特征探讨这些化石类群与相关化石和现代植物的系统关系。并依据其现代亲缘种生长的生态和气候范围，对化石点沉积时期的植被和气候类型进行了推测。 果实中含有多种有价值的分类和系统发育的信息，对于种子植物的演化和系统发育研究具有重要的意义。在河北围场县发现大量保存较好的松科球果和姜科化石，为我们进一步研究松科植物和姜科植物解剖结构，以及探讨其系统演化提供难得的机会和直接的证据，同时为该化石地的植被演替和地层对比研究提供更多的植物学证据。对河北围场县广发永化石点球果和果实的形态研究，鉴定出三种松科球果化石种和一种姜科植物。分别为围场松（Pinus weichangensis sp. nov.）、围场云杉（Picea weichangensis sp. nov.）、围场铁杉（Tsuga weichangensis sp. nov.）以及化石Spirematospermum属未定种。其中围场云杉、围场铁杉球果在形态上与相应现代类群具有明显的差异，可能代表已灭绝的种类。Spirematospermum属未定种为一绝灭类型，是该属在我国的首次记录。这四种化石类群发现，反映早中新世化石该化石点气候与现代完全不同，为湿润的暖温带和亚热带气候。 浙江省在地质结构上位于东亚大陆边缘，是环太平洋岩浆活动带的重要组成部分。宁海县属于浙东南区属华南地层区，其第三纪地层嵊县群在该区分布广泛，其古植物研究仅限于孢粉和叶化石。本报告中首次对该层铜岭祝组的木化石进行了报道。对浙江宁海杜岙化石点早上新世地层中化石木样品的解剖研究，鉴定出三种木材类型，为史马库栎型木Quercus shimakurae、Liqumdambar cf. hisauchi和蔷薇科未定种。前者与现代栎属槲栎类、后者与枫香树属分别具有密切的亲缘关系，是我国首次报道栎属和枫香树属化石木。 云南现今复杂的地势地貌，独特的气候，丰富的植物种类和多样的植被类型是经历了长达数百万年的地质构造运动和自然环境演变的结果。第三纪时期由于大陆板块运动导致印度板块与亚洲板块的对接和碰撞，其地壳构造运动异常活跃。其第三系陆相地层广泛分布于古生代褶皱区的200多个互不相连的中、小型盆地及中、新生代断陷和拗陷型山间盆地中，并蕴涵了丰富的植物化石，为我们研究植被和植物演化提供了众多的证据。本次研究基于云南中部寻甸县金所煤矿和先锋煤矿的大量褐煤化和丝炭化材料，为进一步恢复云南晚第三纪气候和植被提供更多的依据，尤其是丝炭材料保存了木材精细而真实的结构，为木材准确鉴定和演化提供了可靠的依据。根据对云南金所和先锋化石点晚上新世沉积中褐煤化材料和丝炭样品解剖结构的研究，鉴定出8种化石木，包括2种裸子植物，5种双子叶植物和1种单子叶植物;分属5科7属。化石类群包括松属（Pinus）五针松组未定种Section Cembra sp.、云杉属未定种Picea sp、寻甸含笑Michelia xundianensis sp. nov.、多角含笑 Michelia angulata sp. nov.、Lithocarpoxylon cf. radiporosum、Castanoradix sp.、寻甸珍珠花Lyonia xundianensis sp. nov.、竹亚科未定种Bambusoideae sp。根据现今这些化石对应类群的生长和分布的气候区域，沉积时期的气候与现代气候较为接近。

杉科植物的表皮结构研究及古环境重建

全球古近纪和新近纪气候波动明显，很多科学家对古近纪和新近纪生物演化和气候演变规律的定量研究给予了相当的重视。杉科植物有长期发展的历史、少数的现存种和丰富的化石记录，成为指示古环境的理想植物之一。利用杉科植物重建古环境，首先要对化石植物进行正确的分类鉴定。杉科各属枝叶形态特征变异幅度较大，且枝叶排列和形态特征近似，有时各属之间存在交叉特征。杉科化石标本通常仅保存枝叶形式，且多个属的化石标本经常发现于同一地层，因而分类鉴定比较困难。植物的叶表皮结构是压型植物化石细胞信息的重要来源，是属种分类鉴定重要依据之一。本文在以往研究的基础上，完整分析了杉科9属现生植物的表皮特征，建立了杉科化石植物分类鉴定的现生植物的表皮特征参照系。 杉科植物的叶多为条形、钻形、鳞形或披针形，同种植物有1种、2种甚至3种叶型。其中水杉属的叶交互对生，其它属的叶螺旋状互生。水杉属的多数表皮细胞垂周壁明显弯曲，落羽杉属和杉木属有时微呈波状，其他属的表皮细胞垂周壁直。多数植物的叶片近轴面和远轴面的气孔数量和分布不同。一般来说，条形叶和披针形叶的远轴面气孔分布状况和气孔数量稳定，远轴面的中部最稳定。条形叶远轴面的气孔分布于中脉两侧，形成纵向的气孔带。条形叶近轴面气孔分布状况和气孔数量变化大，近轴面的气孔数量有时与远轴面近似，但多数情况下比远轴面少，有时整个叶片的近轴面仅少数几个气孔或没有气孔分布。钻形叶的近轴面和远轴面的气孔数量近似，或叶片近轴面的气孔数量比远轴面的气孔数量多，气孔分布范围也比远轴面气孔分布范围广。气孔椭圆形，落羽杉属植物和水松鳞形叶的气孔长轴方向与叶片长轴垂直或斜向排列，柳杉属植物的气孔多斜向排列，水松的条形叶和条状钻形叶的气孔多平行向排列。落羽杉属和柳杉属以外的杉科植物的气孔长轴多数与叶片长轴平行。在扫描电子显微镜下的密叶杉属植物叶片角质层的内表面，副卫细胞和表皮细胞的垂周壁与叶表面的角度一致，且副卫细胞的形态与表皮细胞类似，这种特殊气孔器被称为A-型气孔器。杉科植物中水杉属、落羽杉属和杉木属的气孔器近似密叶杉的这种A-型气孔器。台湾杉属、柳杉属、水松属、红杉属和巨杉属植物的气孔器与这种A-型气孔器不同，这几属的副卫细胞垂周壁表皮细胞的垂周壁方向不同，且副卫细胞的形态与表皮细胞的形态明显不同。因而气孔所有副卫细胞组成呈明显的圆盘状，保卫细胞在盘子的中央。综合分析植物的枝叶形态和表皮特征可以区分杉科各属。 本文研究了采自抚顺始新世的杉科植物标本，经枝叶特征、表皮结构和球果鳞片等特征分析为水松属的欧洲水松。论文分析了中国东北地区古温度定量研究结果与杉科植物的相关性。抚顺植物群发现有化石水杉M. occidentalis、中华红杉和欧洲水松，根据这三种化石植物的年均温度和年降水量，通过共存分析，推测抚顺始新世的年均温为12.1-17℃，年降水量为1199.6-2231mm。

买麻藤目的化石记录及其与 被子植物起源关系的探讨

二十世纪初，前人在中国的东北地区发现了大量保存完好的动物化石，其中以狼鳍鱼最具代表性，科学家将在该地区发现的化石生物群命名为“热河生物群”。“热河”这一名称得名于该化石群的经典产地，即当时的热河省东部地区。建国后，热河省被撤消，其西部划归河北省，东部划归辽宁省。原热河生物群的经典产地因此落在了今天辽宁省的西部，即辽西地区。但是，“热河生物群”这一在地质古生物学界具有深刻影响的名称仍然保留着，而且近几年来在该地区又有大量的鸟类以及恐龙的化石被发现。该地区现在已经成为世界级的古生物宝库。通过不同的方法对该地区进行时代测定的结果认为该地区的时代为白垩纪早期。 与发现众多、研究深入的动物群相比，在该地区开展的植物学研究起步较晚，但在最近几年取得了很大的进展。目前为止，已经发现的植物类群就有苔藓、蕨类、银杏、苏铁、松柏类和被子植物。其中，银杏、苏铁、松柏类尤为丰富。理论上，被子植物也正是从该生物群所代表的白垩纪早期开始出现并逐步走向繁荣的。近年来在热河生物群中就有不少关于被子植物早期类群的报道，如古果属A rchaefructus和里海果属Hyrcantha等。传统上认为，买麻藤目植物与被子植物起源的关系非常密切，但是最近的分子系统学研究却将该类群推离了被子植物，而作为裸子植物高等类群松柏类的姐妹群对待。但是，在热河生物群中的一些新买麻藤目植物的化石标本与被子植物早期类型化石标本的发现却提供了新的思路或证据。如近年来，我国学者已经在该生物群中报道的麻黄科下的2属4种。这些发现的类群都与买麻藤植物的基部类群麻黄属密切相关。这种新发现带来的证据或许可以为被子植物起源这一世界难题的解决提供新的思路。 在对前人关于买麻藤目植物化石标本的研究进行整理的时候，我们发现我们的部分化石与前人发表的一个种Ephedrites chenii在标本的形态学特征方面完全相同。但是在对该类群及其所在的属与麻黄的现代类群作对比研究后发现，该种植物的繁殖器官的特征完全符合麻黄属的特征，因此将该类群转移到麻黄属中作为新组合对待。另外，根据前人对该种在种加词的命名上的修改，我们将该新组合命名为Ephedra cheniae。 在调查该生物群中的买麻藤植物时，我们发现在部分化石类群中出现了前人没有记载过的新性状，比如在麻黄科类植物中发现了互生的分枝方式，并据此命名一个新的单种属Alloephedra xingxuei。为了探讨互生分枝这一性状对于麻黄科的分类意义，我们调查了国内外不少标本馆中的标本，并在野外做了取样统计。结果发现，在不少现代麻黄的枝条上都出现了不同程度的分枝发育不均衡，表现为在同一节上对生的两个分枝中一侧分枝能够正常发育而另一侧发育迟缓甚至不发育，这种不均衡的发育造成了在现代麻黄中出现了类似互生的分枝状况。在整理前人对麻黄分枝方式研究的基础上，结合我们对野外类群形态学性状的调查，我们认为由于在同一节上对生的两个分枝中一侧延迟或不发育而引起的类似互生的性状是较为广泛存在的，它不应该成为属一级的分类依据，而只能作为种一级的分类依据对待。因此我们将AHoephedra xingxuei转移到麻黄属中作为新组合Ephedra xingxuei处理。 除此之外，我们也发现了不少其他的买麻藤目化石标本，在对买麻藤目以往的化石记录了解以及对这些标本形态学性状把握的基础上，我们将这些新发现的化石标本放置在麻黄科麻黄属中作为新种对待，并根据其叶片以及苞片的特征分别将他们命名为披针叶麻黄（Ephedra lanceoleta）、裂叶麻黄（Ephedra divisa），卵叶麻黄（Ephedra ovata）以及双苞麻黄（Ephedra bibracta）。 与此同时，我们也发现了保存完好的被子植物的化石标本。该标本中具有5个离生的心皮、分枝方式兼具侧生和二叉分枝两种、并具有多裂的叶片。在辽西地区同时代发现的被子植物早期类型共有两个，分别是Archaefructus和Hyrcantha。其中前者具有许多个离生的螺旋状排列在可育枝的顶端1cm内的子房／心皮，而后者只有2-4个子房／心皮。在对我们新发现的化石标本与这两个被子植物的早期类型在叶片形态、分枝式样、果实大小、果实构成、果实排布、心 皮数目等形态学特征对比的基础上，我们认为新的化石标本描述了一个被子植物早期类群的新形态，并根据其具有五个心皮以及多裂的叶片的特征，命名为裂叶文采果Wentsaia divisa gen.＆sp. nov。 由于我们有幸能在辽西同时发现了买麻藤植物的化石标本和被子植物早期类型的标本，这就给了我们一个讨论二者在起源关系方面的机会。在对二者的营养器官特征、繁殖器官结构组成、繁殖器官性别构成以及对二者生活环境理解进行对比的基础上，我们认为，买麻藤目植物的早期类型与被子植物的早期类型之间存在相关性。但是就目前的证据而言，尚无法推测二者之间是否存在性状上的演化关系，而该问题的解决需要更多的化石证据的积累。

MULTIPLE GENOTYPES OF MITOCHONDRIAL-DNA WITHIN A HORSE POPULATION FROM A SMALL REGION IN YUNNAN PROVINCE OF CHINA

mtDNA genotypes of six domestic horses (three adult short horses whose heights are under 1 m and three common domestic horses) from a small region of 15 km(2) in Malipo county of Yunnan province of China were investigated by the technique of restriction fragment length polymorphism (RFLP) with restriction endonucleases which recognize 6-bp sequences. An average of fragments for an individual was obtained. Unlike other domestic animals, this population of horses exhibits high mtDNA genetic diversity. Each of the six horses has a specific mtDNA genotype showing a pattern of multiple maternal origins, as suggested by fossil and literature records. We think the population of horses is an amazing seed-resource pool of horses and hence deserves to be paid more attention from the view of conservation genetics. However it is also remarkable that we did not find any typical mtDNA genetic markers which would discriminate between short horses and common domestic horses.

Y-chromosome evidence of southern origin of the East Asian - Specific haplogroup O3-M122

The prehistoric peopling of East Asia by modern humans remains controversial with respect to early population migrations. Here, we present a systematic sampling and genetic screening of an East Asian-specific Y-chromosome haplogroup (O3-M122) in 2,332 individuals from diverse East Asian populations. Our results indicate that the O3-M122 lineage is dominant in East Asian populations, with an average frequency of 44.3%. The microsatellite data show that the O3-M122 haplotypes in southern East Asia are more diverse than those in northern East Asia, suggesting a southern origin of the O3-M122 mutation. It was estimated that the early northward migration of the O3-M122 lineages in East Asia occurred similar to 25,000-30,000 years ago, consistent with the fossil records of modern humans in East Asia.

Phylogenetic study of complete cytochrome b genes in musk deer (genus Moschus) using museum samples

As an endangered animal group, musk deer (genus Moschus) are not only a great concern of wildlife conservation, but also of special interest to evolutionary studies due to long-standing arguments on the taxonomic and phylogenetic associations in this group. Using museum samples, we sequenced complete mitochondrial cytochrome b genes (1140 bp) of all suggested species of musk deer in order to reconstruct their phylogenetic history through molecular information. Our results showed that the cytochrome b gene tree is rather robust and concurred for all the algorithms employed (parsimony, maximum likelihood, and distance methods). Further, the relative rate test indicated a constant sequence substitution rate among all the species, permitting the dating of divergence events by molecular clock. According to the molecular topology, M. moschiferus branched off the earliest from a common ancestor of musk deer (about 700,000 years ago); then followed the bifurcation forming the M. berezouskii lineage and the lineage clustering M. fuscus, M. chrysogaster, and M. leucogaster (around 370,000 years before present), interestingly the most recent speciation event in musk deer happened rather recently (140,000 years ago), which might have resulted from the diversified habitats and geographic barriers in southwest China caused by gigantic movements of the Qinghai-Tibetan Plateau in history. Combining the data of current distributions, fossil records, and molecular data of this study, we suggest that the historical dispersion of musk deer might be from north to south in China. Additionally, in our further analyses involving other pecora species, musk deer was strongly supported as a monophyletic group and a valid family in Artiodactyla, closely related to Cervidae. (C) 1999 Academic Press.

Phylogenetic relationships of five pika species (genus Ochotona) based on mitochondrial DNA restriction maps

Restriction site mapping of mitochondrial DNA (mtDNA) with 16 restriction endonucleases was used to examine the phylogenetic relationships of Ochotona cansus, O. huangensis, O. thibetana, O. curzoniae and O. erythrotis. A 1-kb length variation between O. erythrotis of subgenus Pika and other four species of subgenus Ochotona was observed, which may be a useful genetic marker for identifying the two subgenera. The phylogenetic tree constructed using PAUP based on 61 phylogenetically informative sites suggests that O. erythrotis diverged first, followed by O. cansus, while O. curzoniae and O. huangensis are sister taxa related to O. thibetana, The results indicate that both O. cansus and O. huangensis should be treated as independent species. If the base substitution rate of pikas mtDNA was 2% per million years, then the divergence time of the two subgenera, Pika and Ochotana, is about 8.8 Ma ago of late Miocence, middle Bao-dian of Chinese mammalian age, and the divergence of the four species in subgenus Ochotona would have occurred about 2.5 - 4.2 Ma ago, Yushean of Chinese mammalian age. This calculation appears to be substantiated by the fossil record.

Evolutionary trends of the mitochondrial lineage differentiation in species of genera Martes and Mustela

We compared partial sequences (402 bp) of the mitochondrial cytochrome b gene in 68 individuals of martens (Martes), weasels (Mustela) and their relatives from the Northern Hemisphere to identify the modes of geographic differentiation in each species. We then compared complete sequences (1140 bp) of the gene in 17 species of the family Mustelidae to know the spatial and temporal modes of speciation, constructing linearized trees with transversional substitutions for deeper lineage divergences and with transversions and transitions for younger lineages. Our data suggested that these lineages of Martes and Mustela differentiated in a stepwise fashion with five radiation stages from the generic divergences (stage I) to the intraspecific divergences (stage V), during the last 10 or 20 million years as the fossil evidence suggests. In the lineage of Martes, the first offshoots are of Martes flavigula, M. pennanti, and Gulo gulo (stage II), the second is M. foina (stage III), and the third are M. americana, M. martes, M. melampus, and M. zibellina (stage IV). The divergence of the lineages of Mustela is likely to have taken place concurrently with the radiations of the Martes. These divergence processes are attributable in part to the geographic allocation along the two continents, North America and Eurasia, as well as among peripheral insular domains, such as Taiwan and the Japanese Islands. In addition, the Eurasian continent itself was shown to have been involved in the species diversification in the martens and weasels.

A multi-locus phylogeny of Nectogalini shrews and influences of the paleoclimate on speciation and evolution

Nectogaline shrews are a major component of the small mammalian fauna of Europe and Asia, and are notable for their diverse ecology, including utilization of aquatic habitats. So far, molecular phylogenetic analyses including nectogaline species have been unable to infer a well-resolved, well-supported phylogeny, thus limiting the power of comparative evolutionary and ecological analyses of the group. Here, we employ Bayesian phylogenetic analyses of eight mitochondrial and three nuclear genes to infer the phylogenetic relationships of nectogaline shrews. We subsequently use this phylogeny to assess the genetic diversity within the genus Episoriculus, and determine whether adaptation to aquatic habitats evolved independently multiple times. Moreover, we both analyze the fossil record and employ Bayesian relaxed clock divergence dating analyses of DNA to assess the impact of historical global climate change on the biogeography of Nectogalini. We infer strong support for the polyphyly of the genus Episoriculus. We also find strong evidence that the ability to heavily utilize aquatic habitats evolved independently in both Neomys and Chimarrogale + Nectogale lineages. Our Bayesian molecular divergence analysis suggests that the early history of Nectogalini is characterized by a rapid radiation at the Miocene/Pliocene boundary, thus potentially explaining the lack of resolution at the base of the tree. Finally, we find evidence that nectogalines once inhabited northern latitudes, but the global cooling and desiccating events at the Miocene/Pliocene and Pliocene/Pleistocene boundaries and Pleistocene glaciation resulted in the migration of most Nectogalini lineages to their present day southern distribution. (C) 2010 Elsevier Inc. All rights reserved.

THE PHYLOGENETIC-RELATIONSHIPS AND CLASSIFICATION OF THE DOUCS AND SNUB-NOSED LANGURS OF CHINA AND VIETNAM

The taxonomy of the douc and snub-nosed langurs has changed several times during the 20th century. The controversy over the systematic position of these animals has been due in part to difficulties in studying them: both the doucs and the snub-nosed langurs are rare in the wild and are generally poorly represented in institutional collections. This review is based on a detailed examination of relatively large numbers of specimens of most of the species of langurs concerned. An attempt was made to draw upon as many types of information as were available in order to make an assessment of the phyletic relationships between the langur species under discussion. Toward this end, quantitative and qualitative features of the skeleton, specific features of visceral anatomy and characteristics of the pelage were utilized. The final data matrix comprised 178 characters. The matrix was analyzed using the program Hennig86. The results of the analysis support the following conclusions: (1) that the douc and snub-nosed langurs are generically distinct and should be referred to as species of Pygathrix and Rhinopithecus, respectively; (2) that the Tonkin snub-nosed langur be placed in its own subgenus as Rhinopithecus (Presbytiscus) avunculus and that the Chinese snub-nosed langur thus be placed in the subgenus Rhinopithecus (Rhinopithecus); (3) that four extant species of Rhinopithecus be recognized: R. (Rhinopithecus) roxellana Milne Edwards, 1870; R. (Rhinopithecus) bieti Milne Edwards, 1897; R. (Rhinopithecus) brelichi Thomas, 1903, and R. (Presbytiscus) avunculus Dollman, 1912; (4) that the Chinese snub-nosed langurs fall into northern and southern subgroups divided by the Yangtze river; (5) that R. lantianensis Hu and Qi, 1978, is a valid fossil species, and (6) the precise affinities and taxonomic status of the fossil species R. tingianus Matthew and Granger, 1923, are unclear because the type specimen is a subadult.

Variation in mitochondrial DNA and phylogeny of six species of pikas (Ochotona)

Phylogenetic relationships of six species of Ochotona were investigated using mitochondrial DNA (mtDNA) restriction-site analysis. The phylogenetic tree constructed using PAUP was based on 62 phylogenetically informative sites with O. erythrotis designated as an outgroup. Two clades were evident. One contained O. curzoniae, O. huangensis, and O. thibetana. in the second, O. daurica was a sister taxon of O. cansus. The five species appear to come from different maternal lineages. The branching structure of the tree and sequence divergence confirm that huangensis and cansus are distinct species, and that mol-osa is a synonym of O. cansus rather than O. thibetana. Divergence time, estimated from genetic distances, indicates that the ancestors of the two maternal lineages diverged ca. 6.5 x 10(6) years ago. O. curzoniae diverged from O. huangensis, and O. daurica diverged from O. cansus, at about the same time (ca. 3.4 x 10(6) years ago). These data suggest a period of rapid radiation of the genus Ochotona in China, perhaps during the late Pliocene. These calculations correspond roughly to tectonic events and environmental changes in China throughout this period, and appear to be substantiated by the fossil record.

Establishment of a Chinese sturgeon Acipenser sinensis tail-fin cell line and its susceptibility to frog iridovirus

Chinese sturgeon Acipenser sinensis, a cartilaginous ganoid, is a 'living fossil' on a deeply isolated evolutionary branch. A cell line was established from Chinese sturgeon tail-fin tissue (CSTF) . These epithelial CSTF cells grew well in Dulbecco's modified Eagle's medium at 25 degrees C. Karyotypic analysis revealed a normal diploid karyotype with 2n = 264 and large numbers of punctate chromosomes. A strain of frog iridoviruses [Rana grylio virus (RGV)] was used to test the susceptibility of this cell line to infection. Infection was confirmed by cytopathic effect, immunofluorescence and electron-microscope observations, which detected the viral antigens or particles in the cytoplasm of RGV-infected cells. Molecular analysis further suggested that c. 550 bp DNA fragment could be cloned from the RGV-infected CSTF cells' DNA with major capsid protein gene polymerase chain reaction primers. Furthermore, after transfection with pEGFP vector DNA, the CSTF cell line produced significant fluorescent signals indicating its utility in exogenous studies.

Mitochondrial molecular clocks and the origin of the major Otocephalan clades (Pisces : Teleostei): A new insight

The Otocephala, a clade including ostariophysan and clupeomorph telcosts, represents about a quarter of total fish species diversity, with about 1000 gencra and more than 7000 species. A series of recent papers have defended that the origin of this clade and of its major groups may be significantly older than the oldest fossils of each of these groups suggest. Some of these recent papers explicitly defend a Pangean origin for some otocephalan groups Such as the Siluriformes or Cypriniformes. To know whether or not the otocephalans as a whole, and particularly the mainly freshwater, cosmopolitan otophysans could have originated before the splitting of the Pangean Supercontinent is of extreme importance, since otophysan fishes are among the most useful animal groups for the determination of historical continental relationships. In the present work we examined divergence times for each major otocephalan group by an analysis of complete mtDNA sequences, in order to investigate if these divergence times support the hypotheses advanced in recent studies. The complete mtDNA sequences of nine representative non-otocephalan fish species and of twenty-one representative otocephalan species was compared. The present study is thus, among the studies dealing with molecular divergence times of telcosts, the one in which a greater number of otocephalan species are included. The divergence times obtained support that the major otocephalan groups had a much older origin than the oldest fossil records available for these groups suggest. The origin of the Otocephala is estimated as having occurred about 282 Mya, with the origin of the Otophysi being estimated at about 251 Mya. (c) 2005 Elsevier B.V. All rights reserved.