三种兰科植物的保护遗传学研究

本研究在野外调查的基础上，采用随机扩增多态DNA (RAPD)分析和形态学方法，研究了我国三种珍稀濒危兰科植物硬叶兜兰（Paphiopedilummicranthum）、麻栗坡兜兰（P. malipoense）和独花兰（Changnienia amoena）的遗传多样性与群体遗传结构，主要结果如下： 1．采用1 2个引物对分布于我国云贵地区的4个硬叶兜兰群体共161个体进行RAPD扩增和分析，得出物种水平的多态条带百分率（PPB）为71.6%，Nci的基因多样度(h)为0.217，Shannon多样性指数（1)为0.3301;4个群体的平均多样性水平为PPB=45.2%，h=0.1457，1= 0.2204：低于远交兰花的平均水平。分子方差分析(AMOVA)表明，在总遗传变异中，群体间遗传变异占20.31%．群体内占79.69%;POPGENE给出的基因分化系数 （Gst）为0.2958;遗传分化略高于远交物种的平均水平。空间自相关分析表明，所检测的两个群体中存在明显的空间结构，基因型在群体中以不同的小斑块存在。遗传距离和空间距离不存在相关关系。 2．用于麻栗坡兜兰的RAPD引物同上，但取样范围只有贵州的2个群体共10个个体。就所研究的个体柬看，麻栗坡兜兰的遗传多样性明显低于远交兰花物种的平均水平。物种水平上，多态条带百分率(PPB)为49.5%。Nei的基因多样度（h）为0. 1174， Shannon多样性指数(I)为0.1764：在群体水平上，上述三个指标的平均值则分别为12. 75%、0.0486和0.0712，均大大低于硬叶兜兰。然而，尽管作了种种努力，麻栗坡兜兰的取样个体数量仍很少，因此所得结果可能会有误差。 3．用16个引物对分布于河南、湖北、湖南、江西4个省11个独花兰群体共216个体进行了RA PD扩增和分析，独花兰在物种水平PPB=80. 7%，h=0.197．1=0. 3116;在群体水平，上述三个指标的平均值则分别为40. 9%、0.1247和0. 1902，均低于远交兰花的平均水平。AMOVA分析表明，11个独花兰群体间的遗传变异占43.48%，群体内的占56.52%：在神农架和新宁地区内部，群体间的遗传变异分别占13.68%和49.3g%(AMOVA)。POPGENE给出的11个群体的基因分化系数(Gst)为0.3580．神农架和新宁地区内的Gst，值分别为0.1194和0.2597。可见，群体间的遗传分化明显高于远交物种的平均水平。空间自相关分析表明，独花兰的遗传变异在群体内不存在明显的空间结构。群体之间的遗传距离和空间距离不存在相关关系。 4．对独花兰7个群体形态性状的分析发现，12个形态性状在群体内均有较高的变异性，cv值变动于0.022-0.30O。庐山群体(LS)在所有性状上的平均值均为最高。营养性状和花部性状的变异性基本一致。除花葶长和花距直径与某些花部性状之间没有显著的相关关系外，各性状之间均有显著的相关性。对XN4群体的统计没有发现假磷茎数目与其他性状之间存在显著相关性。 根据以上对硬叶兜兰、麻粟坡兜兰和独花兰遗传多样性和群体遗传结构韵研究，结合其他方面的资料;对三种兰花的濒危机制进行了初步的分析。首先，人为采挖和破坏是导致这些兰花物种濒危的直接原因，尤其是麻栗坡兜兰。其次， 适宜兰花生存的生境正在只益萎缩、退化和片段化。这两方面因素的共同作用导致上述兰花群体的数目和规模日益下降，由此引发的遗传多样性降低和遗传结构的改变进一步加剧其濒危状况。对于独花兰而言，较低的繁殖能力又使其生存状态雪上加霜。针对三个物种不同的繁殖特性和遗传学状况，提出如下保护措施。(1)硬叶兜兰由于繁殖能力较强、现存个体尚多，遗传多样性损失不甚严重，因此以保护其所在的生境为基础、实施原位保护，是比较合适的保护策略。(2)麻粟坡兜兰目前受破坏程度非常严重;所剩个体很少，遗传多样性较低，已经很难进行有效的原位保护。因此;应利用迁地保护手段抢救目前尚存的个体。(3)独花兰的繁殖能力较弱，因此在保护生境和严禁采摘的基础上，可采用人工授粉等方式，提高结实率、增加繁殖效率，促使其复壮：在进行迁地保护时，则应注意不同群体间存在较大遗传变异而群体内多样性较低这一现实。

东北地区蒙古栎林的群落学特征及物种多样性

根据野外样地调查方法取得数据，我对样地资料进行了以下几方面的分析。根据吴征镒、王荷生区系分析方法，分析了东北地区蒙古栎群落中261种维管植物的区系成分，还分别分析了蒙古栎群落的乔木层、灌木层、草本层以及层间植物的区系成分。比较了东北地区的10个地点和河北省1个地点的蒙古栎群落物种所在属的分布区类型，计算了温带属与热带属（T／R）的比值，并给出了T／R值、纬度和海拔三者关系的回归方程。最后对这种分布格局产生的原因进行了解释。分析了东北地区10个地点蒙古栎群落中290个维管植物的生活型，发现东北地区蒙古栎群落物种的生活型以地面芽最多，同时本文对地下芽、地面芽与纬度、海拔的关系进行了回归分析。根据Raunkiaer系统，分析了蒙古栎群落中337种维管植物的叶型，发现蒙古栎群落植物以小型叶为主，并分析了叶的边缘状况，全缘叶占22.3％。还分别分析了群落乔木、灌木和草本的叶型及叶缘状况。分析了13个地点蒙古栎群落物种相似性与两地之间距离的关系。 比较了丰林自然保护区三个不同年龄林（64年、100年和270年）物种多样性特征。对黑龙江省七个地点的蒙古栎林的更新特点的分析，蒙古栎林可划分为不同特点的蒙古栎林型，即蒙古栎纯林、蒙古栎桦林林、蒙古栎落叶松林、蒙古栎槭树林、蒙古栎红松林和蒙古栎红松混交林等。 比较了13个地点蒙古栎群落的物种丰富度、Simpson指数、PIE指数、Shannon指数和Pielou指数。并对蒙古栎群落和核桃揪群落、蒙古栎群落和长白落叶松群落、蒙古栎群落和杂灌丛群落及其交错带进行了研究。采用点样地法对五个地点蒙古栎的邻体多样性进行了研究，用物种共同出现百分率测定了4个地点的蒙古栎与其伴生种的种间联结值（PC值），并引入了LS值方法（即相邻物种的平均个体数目），对4个地点蒙古栎群落在不同的环境因子下物种多样性的进行了比较。

百合鳞茎低温贮藏及热胁迫下新铁炮百合的光合特性

百合是重要的球根花卉，是世界五大切花之一。我国的百合野生资源丰富，但百合鲜切花生产与世界花卉大国相比仍然存在差距，优质的商品种球大量依靠进口，实现商品种球国产化能够促进百合鲜切花生产和农业经济发展。温度是影响百合生长发育最重要的因子之一，影响百合鳞茎发育，限制百合的分布区域。 百合鳞茎具有自然休眠的特性，低温处理是目前打破百合鳞茎休眠的最常用的方法。低温处理期间，鳞茎内发生复杂的反应，淀粉水解，鳞茎内的淀粉酶（α-淀粉酶和β-淀粉酶）活性增加，可溶性糖主要是蔗糖积累;可溶性蛋白质含量增加，游离氨基酸在鳞茎相对幼嫩的器官中集中;休眠解除期间脱落酸和玉米素核苷含量呈下降趋势，赤霉素含量呈上升趋势且活性增高，鳞茎各部位生长素都有上升，一些其他生长调节剂如Me-JA和多胺对解除百合鳞茎也有作用。低温处理期间，鳞茎内各种激素相互作用，共同调控鳞茎的休眠状态。利用低温处理打破百合鳞茎休眠的过程中，温度要求控制在稳定的范围内。利用冰箱低温处理打破百合鳞茎休眠的实验中，放入样品前冰箱内的温度在所设定温度±1℃范围内波动，且不同部位温度均匀;但冰箱内放入样品后，其内部不同部位的温度相差较大，表现为上部温度高，下部温度低，冰箱内部不同部位温度差异很大。 从百合资源在中国的分布看，华北地区的百合资源相对稀缺，温度是限制其生长的重要环境因子。新铁炮百合能够在炎热的华南地区露地栽培，将其在华北地区进行区域化露地栽培实验，对百合栽培应用推广，扩大栽培面积，降低运输成本，以及保证鲜切花质量有重要意义。通过气体交换测定的光合作用是对高温最敏感和综合的生理指标，可以在植物生长和生物量积累未发生明显变化之前揭示高温的影响。本研究通过人工气候箱，设定四个温度梯度：25℃，32℃，38℃，44℃，处理2h，通过测定新铁炮百合幼苗的光合特性研究其耐热程度、探讨可能的耐热机制。结果表明：净光合作用速率（Pn）在小于38℃时下降幅度不大，大于38℃后显著下降，随着处理温度的提高，气孔导度（Gs）呈下降的趋势，胞间二氧化碳浓度（Ci）则上升，而气孔限制值（Ls）下降。高温下，两品种叶片最小荧光（Fo）无明显变化，最大荧光（Fm）和光系统II（PSⅡ）最大光化学效率（Fv/Fm）下降程度较小;光下，PSⅡ实际光化学效率（ΦPSⅡ）呈下降趋势，44℃处理后显著下降;NPQ随处理温度的提高而上升;处理温度升高，SOD、APX、CAT、POD活力增强。研究表明新铁炮百合能够耐受32-38℃的高温;热胁迫下，叶片通过提高非光化猝灭和抗氧化酶活性两种机制来抵御高温胁迫。

青藏高原几种植物的光合特性研究

通过气体交换、荧光猝灭动力学以及反射光谱等技术研究了两个青稞（Hordeum vulgare L.）品种的光合特性及激发能分配。结果表明，青稞的光饱和点1000 μmol m-2 s-1左右。在0～500 μmol m-2 s-1的光强范围里，青稞叶片的光呼吸(Pr)随着光强升高而增加;光强超过500 μmol m-2 s-1以后，光呼吸变化不明显。光呼吸占总光合的比例(Pr/Pm)随光强增强下降。随着光强增强，PSⅡ有效光化学量子效率（Fv′/Fm′），PSⅡ反应中心的实际光化学量子效率（ΦPSⅡ），光化学猝灭系数（qP）不断降低而青稞叶片的非光化学猝灭(NPQ)不断升高，说明越来越多的光能以热耗散的形式耗散掉。光谱分析表明△PRI 随着青稞叶片暴露于光下的时间迅速增大。因此，我们认为光呼吸不是青稞主要的光破坏防御机制，依赖叶黄素循环的热耗散可能是田间青稞耗散过剩光能的主要途径。 通过气体交换、荧光猝灭动力学等技术研究了四种乔木在拉萨和那曲的光合特性及激发能分配。结果表明，四种乔木藏川杨（Populus szechuanica var. tibetica schneid.），银白杨（Populus alba L.），左旋柳(Salix paraplesia var. subintegra C. Wang et P. Y. Pu)，墨竹柳(Salix maizhokunggarensis N. Chao)在拉萨市的光合速率（Pn），叶片气孔导度（Gs），蒸腾速率（Tr）均显著高于那曲。藏川杨和墨竹柳的光下实际光化学效率（ΦPSⅡ）在拉萨显著高于那曲，银白杨和左旋柳的光下实际光化学效率在拉萨和那曲没有显著差异。四种乔木开放反应中心激发能捕获效率（Fv′/Fm′）和天线热耗散（1－Fv′/Fm′）在拉萨和那曲的差异不显著。测量光合时的气温（Tair）拉萨显著高于那曲，除墨竹柳外叶温（Tleaf）也显著高于那曲，墨竹柳的上述两参数在两地间无显著差异。除藏川杨外其余三种乔木在拉萨的胞间二氧化碳浓度（Ci）显著高于那曲，气孔限制值(Ls)显著低于那曲，藏川杨的上述两指标在两地间无显著差异。除墨竹柳外，其余三种乔木在两地的光合（Pn）与叶温（Tleaf）成显著正相关。对银白杨和左旋柳来说，低叶温通过降低气孔导度（Gs）从而降低胞间二氧化碳浓度（Ci）是造成那曲光合低的主要因素之一。对于墨竹柳来说，可能有其他非温度的环境条件影响其气孔导度进而造成气孔限制。此外，叶温可能主要通过非气孔限制来影响藏川杨的光合速率。因此，我们认为在西藏地区不同乔木对海拔高度的响应机制可能不同，但具体机制还需要进一步研究。

Comparative molecular cytogenetic studies in the order Carnivora: mapping chromosomal rearrangements onto the phylogenetic tree

We have made a set of chromosome-specific painting probes for the American mink by degenerate oligonucleotide primed-PCR (DOP-PCR) amplification of flow-sorted chromosomes. The painting probes were used to delimit homologous chromosomal segments among human, red fox, dog, cat and eight species of the family Mustelidae, including the European mink, steppe and forest polecats, least weasel, mountain weasel, Japanese sable, striped polecat, and badger. Based on the results of chromosome painting and G-banding, comparative maps between these species have been established. The integrated map demonstrates a high level of karyotype conservation among mustelid species. Comparative analysis of the conserved chromosomal segments among mustelids and outgroup species revealed 18 putative ancestral autosomal segments that probably represent the ancestral chromosomes, or chromosome arms, in the karyotype of the most recent ancestor of the family Mustelidae. The proposed 2n = 38 ancestral Mustelidae karyotype appears to have been retained in some modern mustelids, e.g., Martes, Lutra, ktonyx, and Vormela. The derivation of the mustelid karyotypes from the putative ancestral state resulted from centric fusions, fissions, the addition of heterochromatic arms, and occasional pericentric inversions. Our results confirm many of the evolutionary conclusions suggested by other data and strengthen the topology of the carnivore phylogenetic tree through the inclusion of genome-wide chromosome rearrangements. Copyright (C) 2002 S. KargerAG, Basel.

Comparative map between the domestic pig and dog

Cross-species chromosome painting with probes derived from flow-sorted dog and human chromosomes was used to construct a high-resolution comparative map for the pig. In total 98 conserved autosomal segments between pig and dog were detected by probes specific for the 38 autosomes and X Chromosome of the dog. Further integration of our results with the published human-dog and cat-dog comparative maps, and with data from comparative gene mapping, increases the resolution of the current pig-human comparative map. It allows for the conserved syntenies detected in the pig, human, and cat to be aligned against the putative ancestral karyotype of eutherian mammals and for the history of karyotype evolution of the pig lineage to be reconstructed. Fifteen fusions, 17 fissions, and 23 inversions are required to convert the ancestral mammalian karyotype into the extant karyotype of the pig.

Genetic diversity of Yunnan local pig breeds inferred from blood protein electrophoresis

Protein electrophoresis was used to examine the blood protein polymorphism in Yunnan local pig breeds, i.e., the Saba pig, Dahe pig, and Diannan small-ear pig breeds, Of 38 genetic loci surveyed 9 were found to be polymorphic. The percentage of polymorphic loci (P) varies from 0.1875 to 0.2121, and the mean individual heterozygosity (H) varies front 0.0712 to 0.1027 in three pig breeds. The results indicate that blood protein polymorphism in Yunnan pig breeds is high. Yunnan local pig breeds have a wealth of genetic diversity at the level of blood proteins.

Sequence variation and genetic diversity in the giant panda

About 336-444 bp mitochondrial D-loop region and tRNA gene were sequenced for 40 individuals of the giant panda which were collected from Mabian, Meigu, Yuexi, Baoxing, Pingwu, Qingchuan, Nanping and Baishuijiang, respectively. 9 haplotypes were found in 21 founders. The results showed that the giant panda has low genetic variations, and that there is no notable genetic isolation among geographical populations. The ancestor of the living giant panda population perhaps appeared in the late Pleistocene, and unfortunately, might have suffered bottle-neck attacks. Afterwards, its genetic diversity seemed to recover to same extent.

Genetic diversity and relationship of Yunnan native cattle breeds and introduced beef cattle breeds

In this study, random amplified polymorphic DNA (RAPD) analysis was used to estimate genetic diversity and relationship in 134 samples belonging to two native cattle breeds from the Yunnan province of China (DeHong cattle and DiQing cattle) and four intro

The Genomes of Oryza sativa: A history of duplications

We report improved whole-genome shotgun sequences for the genomes of indica and japonica rice, both with multimegabase contiguity, or almost 1,000-fold improvement over the drafts of 2002. Tested against a nonredundant collection of 19,079 full-length cDNAs, 97.7% of the genes are aligned, without fragmentation, to the mapped superscaffolds of one or the other genome. We introduce a gene identification procedure for plants that does not rely on similarity to known genes to remove erroneous predictions resulting from transposable elements. Using the available EST data to adjust for residual errors in the predictions, the estimated gene count is at least 38,000 - 40,000. Only 2% - 3% of the genes are unique to any one subspecies, comparable to the amount of sequence that might still be missing. Despite this lack of variation in gene content, there is enormous variation in the intergenic regions. At least a quarter of the two sequences could not be aligned, and where they could be aligned, single nucleotide polymorphism ( SNP) rates varied from as little as 3.0 SNP/kb in the coding regions to 27.6 SNP/kb in the transposable elements. A more inclusive new approach for analyzing duplication history is introduced here. It reveals an ancient whole-genome duplication, a recent segmental duplication on Chromosomes 11 and 12, and massive ongoing individual gene duplications. We find 18 distinct pairs of duplicated segments that cover 65.7% of the genome; 17 of these pairs date back to a common time before the divergence of the grasses. More important, ongoing individual gene duplications provide a never-ending source of raw material for gene genesis and are major contributors to the differences between members of the grass family.

Characterization of a new bradykinin-potentiating peptide (TmF) from Trimeresurus mucrosquamatus

A novel bradykinin-potentiating peptide (BPP), designated as TmF, has been purified to homogeneity from the venom of Trimeresurus mucrosquamatus by 70% cold methanol extraction, Sephadex G-15 gel filtration and reverse-phase high performance liquid chromatography (RP-HPLC). The amino acid sequence of TmF was determined to be pGlu-Gly-Arg-Pro-Leu-Gly-Pro-Pro-Ile-Pro-Pro (pGlu denotes pyroglutamic acid), which shared high homology with other BPPs. The molecular mass of TmF was 1.1107 kD as determinated by electrospray ionization-mass spectrometry (ESI-MS), which was in accordance with the calculated value of 1.1106 kD. The potentiating "unit" of TmF to bradykinin-induced (BK-induced) contraction on the guinea-pig ileum in vitro was (1.13 +/- 0.3) unit (mg/L), and TmF (5.0 x 10(-4) mg/kg) increased the pressure-lowering-effect of bradykinin (5.0 x 10(-5) mg/kg) with approximate descent value of (14 +/- 2) mmHg. In addition, TmF inhibited the conversion of angiotensin I to angiotensin 11, 2 x 10(-3) mg of TmF caused 50% inhibition (IC50) of angiotensin-converting enzyme (ACE) hydrolyzing activity to bradykinin.