TEMPERATURE RATE DEPENDENCE OF YIELD AND FRACTURE-BEHAVIOR OF PHENOLPHTHALEIN POLY(ETHER KETONE)

The rate/temperature dependence of yield stress, tensile modulus and crack opening displacement of phenolphthalein poly(ether ketone) (PEK-C) has been investigated. The rate/temperature dependence of crack opening displacement and the correlation establis

Knockdown and overexpression of Unc-45b result in defective myofibril organization in skeletal muscles of zebrafish embryos

We thank John Stubblefield for editing, Junling Li for the assistance in the Western blot analysis. This research was supported by a training grant from National Institutes of Health (#T32 AR07592) and a research grant MB-8713-08 from United States - Israel Binational Agriculture Research and Development Fund.

Isolation and mapping of telomeric pentanucleotide (TAACC)(n) repeats of the pacific whiteleg shrimp, Penaeus vannamei, using fluorescence in situ hybridization

To develop genetic and physical maps for shrimp, accurate information on the actual number of chromosomes and a large number of genetic markers is needed. Previous reports have shown two different chromosome numbers for the Pacific whiteleg shrimp, Penaeus vannamei, the most important penaeid shrimp species cultured in the Western hemisphere. Preliminary results obtained by direct sequencing of clones from a Sau3A-digested genomic library of P. vannamei ovary identified a large number of (TAACC/GGTTA)-containing SSRs. The objectives of this study were to (1) examine the frequency of (TAACC)(n) repeats in 662 P. vannamei genomic clones that were directly sequenced, and perform homology searches of these clones, (2) confirm the number of chromosomes in testis of P. vannamei, and (3) localize the TAACC repeats in P. vannamei chromosome spreads using fluorescence in situ hybridization (FISH). Results for objective I showed that 395 out of the 662 clones sequenced contained single or multiple SSRs with three or more repeat motifs, 199 of which contained variable tandem repeats of the pentanucleotide (TAACC/GGTTA),, with 3 to 14 copies per sequence. The frequency of (TAACC)n repeats in P. vannamei is 4.68 kb for SSRs with five or more repeat motifs. Sequence comparisons using the BLASTN nonredundant and expressed sequence tag (EST) databases indicated that most of the TAACC-containing clones were similar to either the core pentanucleotide repeat in PVPENTREP locus (GenBank accession no. X82619) or portions of 28S rRNA. Transposable elements (transposase for Tn1000 and reverse transcriptase family members), hypothetical or unnamed protein products, and genes of known function such as 18S and 28S rRNAs, heat shock protein 70, and thrombospondin were identified in non-TAACC-containing clones. For objective 2, the meiotic chromosome number of P. vannamei was confirmed as N = 44. For objective 3, four FISH probes (P1 to P4) containing different numbers of TAACC repeats produced positive signals on telomeres of P. vannamei chromosomes. A few chromosomes had positive signals interstitially. Probe signal strength and chromosome coverage differed in the general order of P1 > P2 > P3 > P4, which correlated with the length of TAACC repeats within the probes: 83, 66, 35, and 30 bp, respectively, suggesting that the TAACC repeats, and not the flanking sequences, produced the TAACC signals at chromosome ends and TAACC is likely the telomere sequence for P. vannamei.

Complete mitochondrial genome of the Asian paddle crab Charybdis japonica (Crustacea: Decapoda: Portunidae): gene rearrangement of the marine brachyurans and phylogenetic considerations of the decapods

Given the commercial and ecological importance of the Asian paddle crab, Charybdis japonica, there is a clearly need for genetic and molecular research on this species. Here, we present the complete mitochondrial genome sequence of C. japonica, determined by the long-polymerase chain reaction and primer walking sequencing method. The entire genome is 15,738 bp in length, encoding a standard set of 13 protein-coding genes, two ribosomal RNA genes, and 22 transfer RNA genes, plus the putative control region, which is typical for metazoans. The total A+T content of the genome is 69.2%, lower than the other brachyuran crabs except for Callinectes sapidus. The gene order is identical to the published marine brachyurans and differs from the ancestral pancrustacean order by only the position of the tRNA (His) gene. Phylogenetic analyses using the concatenated nucleotide and amino acid sequences of 13 protein-coding genes strongly support the monophyly of Dendrobranchiata and Pleocyemata, which is consistent with the previous taxonomic classification. However, the systematic status of Charybdis within subfamily Thalamitinae of family Portunidae is not supported. C. japonica, as the first species of Charybdis with complete mitochondrial genome available, will provide important information on both genomics and molecular ecology of the group.

Black carbon and polycyclic aromatic hydrocarbons (PAHs) in surface sediments of China's marginal seas

This study investigates the distribution of black carbon (BC) and its correlation with total polycyclic aromatic hydrocarbons (I PAH) pound in the surface sediments of China's marginal seas. BC content ranges from < 0.10 to 2.45 mg/g dw (grams dry weight) in the sediments studied, and varied among the different coastal regions. The Bohai Bay sediments had the highest BC contents (average 2.18 mg/g dw), which comprises a significant fraction (27%-41%) of the total organic carbon (TOC) preserved in the sediments. In comparison, BC in the surface sediments of the North Yellow Sea, Jiaozhou Bay, East China Sea and the South China Sea is less abundant and accounted for an average of 6%, 8%, 14% and 5%, respectively, of the sedimentary organic carbon pool. The concentration of I PAH pound in the surface sediments ranges from 41 to 3 667 ng/g dw and showed large spatial variations among the sampling sites of different costal regions. The Bohai Bay has the highest I PAH pound values, ranging from 79 to 3 667 ng/g dw. This reflects the high anthropogenically contaminated nature of the sediments in the bay. BC is positively correlated to TOC but a strong correlation is not found between BC and I PAH pound in the surface sediments studied, suggesting that BC and PAHs preserved in the sediments are derived from different sources and controlled by different biogeochemical processes. Our study suggests that the abundance of BC preserved in the sediments could represent a significant sink pool of carbon cycling in China's marginal seas.

PCBs and its coupling with eco-environments in Southern Yellow Sea surface sediments

In this paper, the spatial distribution and source of the PCBs in surface sediments of the Southern Yellow Sea (SYS) and influencing factors, such as the sediment characteristics (components, relative proportions and total organic carbon contents), and hydrodynamic conditions were analyzed. PCB concentrations in the surface sediments ranged from 518-5848 pg/g, with average values of 1715 pg/g decreasing sharply compared to last year. In the study area, the PCB pollution level in the middle area was the highest, followed by that of the east coast and the west coast, respectively. Although the PCB level in the coastal areas was lower than that in the middle areas, it was proven in our study that the Yellow Sea obtained PCBs by virtue of river inputs. There was a positive and pertinent correlation between the clay proportion and PCB concentrations, and the increase of the PCB concentrations was directly proportional to the increase of TOC contents, with r = 0.61, but it was contrary to the sediment grain size. Consequently, the factors controlling PCB distribution had direct or indirect relationships with sediment grain size; moreover, the hydrodynamic conditions determined the sediment components and grain size. In conclusion, hydrodynamic conditions of the Yellow Sea were the most important influencing factors effecting the distribution of PCBs in the surface sediments of the SYS. (C) 2007 Elsevier Ltd. All rights reserved.

济阳坳陷陡坡带砂砾岩体发育特征及油气成藏规律研究

Jiyang depression is one of the most important petroleum production basins in China. The petroleum pools, found easier, have been densely explored and developed. At present, the subtle traps are becoming the main exploring aims. A lot of Tertiary sand-conglomerate body petroleum pools, as one of the important subtle pools, have been discovered recently. It is necessary and urgent to study deeply the developing characteristics and petroleum pool distribution of Tertiary sand-conglomerate bodies in Jiyang Depression. The present dissertation has concluded the main developing characteristics of the Tertiary sand-conglomerate bodies in Jiyang Depression, and studied the sand-conglomerate bodies in Chengnan Fault Zone in detail. Depending on the synthesized studies of geology, geophysics and logging data, the following conclusions have been arrived at. Four criterion layers in Member 3 of Shahejie Formation, according to the depositional cycle analyses, have been established for the subdivision of different layers of sand-conglomerate bodies and the correlation of different sand-conglomerate bodies. It indicated that the alluvial delta, delta-fan, alluvial fan, shallow water fan , deep water turbidite , fan-front turbidite are the six kinds of sand-conglomerate bodies, which have been distinguished in Jiyang Depression with the study of genetic types, characteristics and distribution of sand-conglomerate bodies. The shallow water fan, steep slope deep water turbidite and fan-front turbidite were the main types of sand-conglomerate bodies developed in Chengnan steep slope. Their identification and distribution have been described in detail. The development and distribution of sand-conglomerate bodies were resulted by fault depressing, palco-climate change and channel or trough on the uplift. The fault depressing is the most important-factor to the episodic developing of sand-conglomerate bodies. An episodic developing genetic mode has been established by the contrast analyses between episodic fault depressing and climate change cycles. The hydrocarbon accumulation in the sand-conglomerate bodies in the steep slope was correlated with fan types, depositional phases, fault depressing and diagenesis. Sand-conglomerate wedge out (include up-oblique and onlap), lithological wedge out, mud screen (for anticline), fault plugging (by mud opposite sand, mud daubing) are the 5 possible mechanisms of oil accumulation. Lithological pool, stratigraphic pool and tectonic pool and lithologic-tectonic complex pool, and 9 subtypes of petroleum pools have been detected. It is easy for different pools to be combined as a complex reservoir, which was distributed along the syn-depositional fault slopes. The sand-conglomerate bodies in deep sag were usually evaluated as pore zone for hydrocarbon accumulation before. In fact, they are potential. Because of fan-front turbidite sands were especially developed in these zones, the sands have a close connection with the oil mud, and lithological pools can be expected to find in these zones. Chengnan fault slope was main channel of oil migration, and mud screen is the principle key for the oil accumulation in the sand-conglomerate bodies. If there was no mud between the sand-conglomerate bodies or on the top of sand-conglomerate bodies, the sand-conglomerate bodies would connect each other and there would be no dense material to hold up the oil migration along the slope. As the sand-conglomerate bodies could not been taken as a screen, the mud screen is the key for developing pool in this slope. According to this principle, about 6 potential traps, such as C915 block, C913 block, C916 block, south of Y109 well block, Y104 block and Y153 block, were selected for exploration and development.