Fine-grained Pleistocene deepwater turbidite channel system on the slope of Qiongdongnan Basin, northern South China Sea

Recently, as oil exploitation has become focused on deepwater slope areas. more multi-channel high resolution 2D and 3D seismic data were acquired in the deepwater part of the Qiongdongnan Basin, northern South China Sea. Based on 3D seismic data and coherence time slice, RMS and 3D visualization, a series of deepwater channels were recognized on the slope that probably developed in the late Quaternary period. These channels trend SW-NE to W-E and show bifurcations, levees, meander loops and avulsions. High Amplitude Reflections (HARs), typical for channel-levee complexes, are of only minor importance and were observed in one of the channel systems. Most of the detected channels are characterized by low-amplitude reflections, and so are different from the typical coarse-grained turbidite channels that had been discovered worldwide. The absence of well data in the study area made it difficult to determine the age and lithology of these channels. Using a neighboring drill hole and published data about such depositional systems worldwide, the lithology of these channels is likely to be dominated by mudstones with interbedded thin sandstones. These channels are formed by turbidity currents originated from the little scale mountain river of mid-Vietnam in SW direction and were probably accompanied by a relative sea level drop in the last glacial age. These channels discovered on the northern South China Sea slope are likely to be fine-grained, mud-dominant and low N:G deposits in a deepwater paleogeographic setting. (C) 2009 Elsevier Ltd. All rights reserved.

Origin, development and evolutionary model of shelf desertization environment in late stage of Upper Pleistocene

Based on the study of palaeo-environmental evolution in the shelves of the Eastern China Seas, the concept of ''shelf desertization'' in the late stage of Upper Pleistocene is defined; the environmental background and evolutionary process of shelf desertization are analysed. Study on the records of subbottom profiling and the data of core samples from shelf areas revealed that during low sea-level stages, the sedimentary environment in the exposed shelf plains was dominated by aeolian depositional process under cold and dry climatic conditions, i.e. under the action of strong winter-monsoon winds. Parts of the exposed marine strata were disintegrated, and aeolian sand dunes were formed on the disintegrated marine deposits, from which the finer sediment grains were blown away by wind and deposited in the downwind areas to form the derivative loess deposits. Thus a desertization environmental system was formed in the exposed shelf plains of the Eastern China Seas.

滇西北地区晚更新世以来植被演替与气候变化研究

随着全球环境的变化，人们迫切的希望了解整个地球环境的变化过程、规律和未来发展的趋势。对地质历史时期发生过的环境事件的了解，能为我们研究现在的和预测未来的环境变化提供有价值的资料。 孢粉分析作为一种古环境的代用指标，在恢复古植被与古气候方面起着不可替代的作用。而精确的孢粉分析建立在对现代花粉与当地植被的关系正确的认识基础上，由此才可以更准确地提取地层中的花粉所蕴含的植被和环境信息。 云南省地理位置较特殊，地貌复杂，气候类型多样，与之对应的植物种类多样性丰富，植被类型多样。本项研究选择云南省南部和西部地区作为研究地点，采集表土、地表苔藓、蜘蛛网、树皮和树上地衣苔藓五种天然孢粉捕捉器来研究现代花粉与当地植被的关系，为认识现代花粉雨提供新的研究思路。同时，我们在滇西北选择拉市海、文海、哈里谷和属都湖这四个高原湖泊来研究晚更新世以来滇西北地区植被演替和气候变化，为云南历史时期气候变化提供新的研究资料，同时也为全面认识晚更新世以来的气候变化提供新的证据。研究结果如下： 1. 现代花粉雨与当地植被关系的研究 对云南省西北部、中部和南部采集的19个蜘蛛网样品分析得出：云南省西北部样品中共鉴定20个孢粉类型，分属于16个科;云南省中部样品中共鉴定28个类型，分属于23个科;在云南省南部勐腊县采集的样品中共鉴定28个类型，分属于25个科;在望天树北京植物园中采集的样品共鉴定38个类型，分属于34个科;在西双版纳北京植物园中采集的样品中共有11个类型，分属于10个科。结果表明：蜘蛛网样品中分析出的孢粉类型反映了云南省从南到北不同的植被类型，说明蜘蛛网可以作为一种天然孢粉捕捉器来进行现代花粉雨的研究。 同时，在云南西北部文笔水库采集的五种天然孢粉捕捉器（表土、地表苔藓、树皮、蜘蛛网、树上地衣和苔藓）进行了对比研究。结果表明：表土所得的孢粉中木本植物花粉的百分含量为90.5-96%，远大于地表苔藓（53.1-81.7%）、蜘蛛网（61.7%）、树皮（53.8%）和树上地衣、苔藓（50-53.6%）所获得的木本植物花粉的百分含量。与当地植被进行对比结果表明：这五种天然孢粉捕捉器中，表土、地表苔藓和蜘蛛网比树皮和树上地衣、苔藓能更好的反映当地的植被。 2. 滇西北地区晚更新世以来植被演替与气候变化 在过去2, 5000年左右的地质历史时期，滇西北地区植被和气候变化大致经历了以下三个发展阶段。 （1） 2, 5381 B.P—1, 9335 B.P.：属都湖地区（海拔：3620m）主要是以蓼科植物为主的草甸植被，气候寒冷湿润。 （2） 1, 9335 B.P.—1, 2426 B.P.：属都湖地区是以藜科或蒿属为主的草甸植被，气候从湿润过渡到干旱;而在海拔稍低的文海地区（海拔3080m），主要是阔叶栎林或针阔混交林，气候温凉略湿到寒冷干旱。 （3） 1, 2426 B.P.—至今：属都湖地区是以蓼科为主的草甸植被，气候仍寒冷湿润;海拔稍低的哈里谷（海拔3277m）是以松和冷杉为主的针叶林，气候冷干;文海地区的植被逐渐演替为以松和冷杉为主的针阔叶混交林，但栎属花粉的含量远高于哈里谷地区，说明当时文海的气温虽然低，却比哈里谷稍高;而海拔更低的拉市海（海拔2440m）则是以松为主的针叶林，气候比其他几个地区温暖。 在全新世气候最适宜期（约8000 B.P.以来），哈里谷是以栎和松为主的针阔混交林;文海是以松为主的针阔混交林;而拉市海是以松和蕨类植物为主。说明随着海拔的升高（从拉市海到属都湖），温度逐渐下降，植被类型也由暖性针叶林过渡到针阔混交林再到草甸。 从6000 B.P.至今，文海和哈里谷植被在这一阶段都是以松和冷杉为主的暗针叶林，少量混生一些阔叶类植物，气候变得冷湿;属都湖则仍是以蓼科为主的草甸，气候变得更加寒冷。 研究证明：滇西北地区总的气候变化趋势与全球变化规律基本一致，在1,1805—9990 B.P.期间发生新仙女木事件，在8000B.P.以来，气候变得温暖湿润，为全新世气候最适宜期。此后，气候逐渐变得接近现代。

梭鱼的分子系统地理学研究——晚更新世西北太平洋边缘海隔离分化及其有限的扩散能力

下载PDF阅读器西北太平洋具有独特的板块特征和地质历史,几个边缘海将亚洲大陆和太平洋隔开.在更新世冰期的低海平面时期,海洋生物群体可能会被隔离在日本海、东海和南海.伴随冰后期海平面的上升,以往的研究认为被隔离在3个边缘海的群体会因为扩散的作用而重新混匀.为了检验该假说,本研究探讨了梭鱼的系统地理格局.采集梭鱼分布范围内9个地点的272个梭鱼个体,分析其线粒体控制区5'端435 bp的片段.共检测到3个不同的单倍型类群,这3个单倍型类群可能是在更新世冰期被隔离在3个边缘海内而产生的分化.这一研究结果与以往的假设相反,3个单倍型类群在地理上的频率分布存在很大差异.分子方差分析和群体多样性指数都表明3个边缘海内的梭鱼群体间存在显著的遗传差异.这些结果表明:与基于生物学特性预期的梭鱼具有较高的扩散能力相反,梭鱼群体空间上的基因交流是很有限的.东海的梭鱼群体间缺乏系统地理格局,这可能是因为末次冰盛期后梭鱼群体发生了近期的栖息地扩张,群体间没有足够的进化时间在迁移-漂变间取得平衡.

Sequence variation and genetic diversity in the giant panda

About 336-444 bp mitochondrial D-loop region and tRNA gene were sequenced for 40 individuals of the giant panda which were collected from Mabian, Meigu, Yuexi, Baoxing, Pingwu, Qingchuan, Nanping and Baishuijiang, respectively. 9 haplotypes were found in 21 founders. The results showed that the giant panda has low genetic variations, and that there is no notable genetic isolation among geographical populations. The ancestor of the living giant panda population perhaps appeared in the late Pleistocene, and unfortunately, might have suffered bottle-neck attacks. Afterwards, its genetic diversity seemed to recover to same extent.

Mitochondrial cytochrome b gene sequences of Old World monkeys: With special reference on evolution of Asian colobines

The classification and phylogenetic relationships of the Old World monkeys are still controversial. For Asian colobines, from three to nine genera were recognized by different primatologists. In the present study, we have sequenced a 424 bp mitochondrial tRNA(Thr) gene and cytochrome b gene fragment from Macaca mulatta, Mandrillus sphinx, Mandrillus leucophaeus, Semnopithecus entellus, Trachypithecus vetulus, T. johnii, T. phayrei, T. francoisi, Pygathrix nemaeus, Rhinopithecus roxellanae, R. bieti, R. avunculus, Nasalis larvatus, and Colobus polykomos in order to gain independent information on the classification and phylogenetic relationships of those species. Phylogenetic trees were constructed with parsimony analysis by weighting transversions 5 or 10 fold greater than transitions. Our results support the following conclusions: (1) the Old World monkeys are divided into two subfamilies; (2) that among the colobines, Colobus, the African group, diverged first, and Nasalis and Rhinopithecus form a sister clade to Pygathrix; (3) that there are two clades within leaf monkeys, i.e. 1) S. entellus, T. johnii, and T. vetulus, and 2) T, phayrei and T. francoisi; (4) that Rhinopithecus avunculus, R. roxellanae, and R. bieti are closely related to each other, and they should be placed into the same subgenus; (5) that Rhinopithecus is a distinct genus; and (6) that the ancestors of Asian colobines migrated from Africa to Asia during the late Pliocene or early Pleistocene.

Phylogeny and biogeography of the Petaurista philippensis complex (Rodentia : Sciuridae), inter- and intraspecific relationships inferred from molecular and morphometric analysis

With modified DNA extraction and Purification protocols, the complete cytochrome b gene sequences (1140 bp) were determined from degraded museum specimens. Molecular analysis and morphological examination of cranial characteristics of the giant flying squirrels of Petaurista philippensis complex (P. grandis, P. hainana, and P. yunanensis) and other Petaurista species yielded new insights into long-standing controversies in the Petaurista systematics. Patterns of genetic variations and morphological differences observed in this study indicate that P. hainana, P. albiventer, and P. yunanensis can be recognized as distinct species, and P. grandis and P. petaurista are conspecific populations. Phylogenetic relationships reconstructed by using parsimony, likelihood, and Bayesian methods reveal that, with P. leucogenys as the basal branch, all Petaurista groups formed two distinct clades. Petaurista philippensis, P. hainana, P. yunanensis, and P. albiventer are clustered in the same clade, while P. grandis shows a close relationship to P. petaurista. Deduced divergence times based on Bayesian analysis and the transversional substitution at the third codon suggest that the retreating of glaciers and upheavals or movements of tectonic plates in the Pliocene-Pleistocene were the major factors responsible for the present geographical distributions of Petaurista groups. (c) 2005 Elsevier Inc. All rights reserved.

A multi-locus phylogeny of Nectogalini shrews and influences of the paleoclimate on speciation and evolution

Nectogaline shrews are a major component of the small mammalian fauna of Europe and Asia, and are notable for their diverse ecology, including utilization of aquatic habitats. So far, molecular phylogenetic analyses including nectogaline species have been unable to infer a well-resolved, well-supported phylogeny, thus limiting the power of comparative evolutionary and ecological analyses of the group. Here, we employ Bayesian phylogenetic analyses of eight mitochondrial and three nuclear genes to infer the phylogenetic relationships of nectogaline shrews. We subsequently use this phylogeny to assess the genetic diversity within the genus Episoriculus, and determine whether adaptation to aquatic habitats evolved independently multiple times. Moreover, we both analyze the fossil record and employ Bayesian relaxed clock divergence dating analyses of DNA to assess the impact of historical global climate change on the biogeography of Nectogalini. We infer strong support for the polyphyly of the genus Episoriculus. We also find strong evidence that the ability to heavily utilize aquatic habitats evolved independently in both Neomys and Chimarrogale + Nectogale lineages. Our Bayesian molecular divergence analysis suggests that the early history of Nectogalini is characterized by a rapid radiation at the Miocene/Pliocene boundary, thus potentially explaining the lack of resolution at the base of the tree. Finally, we find evidence that nectogalines once inhabited northern latitudes, but the global cooling and desiccating events at the Miocene/Pliocene and Pliocene/Pleistocene boundaries and Pleistocene glaciation resulted in the migration of most Nectogalini lineages to their present day southern distribution. (C) 2010 Elsevier Inc. All rights reserved.

Molecular phylogeny and taxonomy of wood mice (genus Apodemus Kaup, 1829) based on complete mtDNA cytochrome b sequences, with emphasis on Chinese species

Phylogenetic relationships among 15 species of wood mice (genus Apodemus) were reconstructed to explore some long-standing taxonomic problems. The results provided support for the monophyly of the genus Apodemus, but could not reject the hypothesis of paraphyly for this genus. Our data divided the 15 species into four major groups: (1) the Sylvaemus group (A. sylvaticus, A. flavicollis, A. alpicola, and A. uralensis), (2) the Apodemus group (A. peninsulae, A. chevreri, A. agrarius, A. speciosus, A. draco, A. ilex, A. semotus, A. latronum, and A. mystacinus), (3) A. argenteus, and (4) A. gurkha. Our results also suggested that orestes should be a valid subspecies of A. draco rather than an independent species; in contrast, A. ilex from Yunnan may be regarded as a separate species rather than a synonym of orestes or draco. The species level status of A. latronum, tscherga as synonyms of A. uralensis, and A. chevrieri as a valid species and the closest sibling species of A. agrarius were further corroborated by our data. Applying a molecular clock with the divergences of Mus and Rattus set at 12 million years ago (Mya) as a calibration point, it was estimated that five old lineages (A. mystacinus and four major groups above) diverged in the late Miocene (7.82-12.74 Mya). Then the Apodemus group (excluding A. mystacinus) split into two subgroups: agrarius and draco, at about 7.17-9.95 Mya. Four species of the Sylvaemus group were estimated to diverge at about 2.92-5.21 Mya. The Hengduan Mountains Region was hypothesized to have played important roles in Apodemus evolutionary histories since the Pleistocene. (C) 2004 Elsevier Inc. All rights reserved.