Microarray Analyses of Gene Expression during the Tetrahymena thermophila Life Cycle

Background: The model eukaryote, Tetrahymena thermophila, is the first ciliated protozoan whose genome has been sequenced, enabling genome-wide analysis of gene expression. Methodology/Principal Findings: A genome-wide microarray platform containing the predicted coding sequences (putative genes) for T. thermophila is described, validated and used to study gene expression during the three major stages of the organism's life cycle: growth, starvation and conjugation. Conclusions/Significance: Of the,27,000 predicted open reading frames, transcripts homologous to only,5900 are not detectable in any of these life cycle stages, indicating that this single-celled organism does indeed contain a large number of functional genes. Transcripts from over 5000 predicted genes are expressed at levels >5x corrected background and 95 genes are expressed at >250x corrected background in all stages. Transcripts homologous to 91 predicted genes are specifically expressed and 155 more are highly up-regulated in growing cells, while 90 are specifically expressed and 616 are up-regulated during starvation. Strikingly, transcripts homologous to 1068 predicted genes are specifically expressed and 1753 are significantly up-regulated during conjugation. The patterns of gene expression during conjugation correlate well with the developmental stages of meiosis, nuclear differentiation and DNA elimination. The relationship between gene expression and chromosome fragmentation is analyzed. Genes encoding proteins known to interact or to function in complexes show similar expression patterns, indicating that co-ordinate expression with putative genes of known function can identify genes with related functions. New candidate genes associated with the RNAi-like process of DNA elimination and with meiosis are identified and the late stages of conjugation are shown to be characterized by specific expression of an unexpectedly large and diverse number of genes not involved in nuclear functions.

土地利用总体规划环境影响评价指标体系研究——以邛崃市土地利用总体规划为例

土地利用是人类根据土地质量特性来开发利用土地，创造财富，满足人类生产和生活的需要，同时改善环境，满足人类生存需要的过程。土地利用总体规划是对未来各类用地在空间上、时间上作出总体的协调的预先安排，不仅受到一定历史背景的制约，同时也受影响于当前的社会经济发展情况。但是，国内传统的土地利用总体规划往往从狭窄的技术经济观点出发，对远期的生态环境问题、社会问题缺少考虑，将新的用地尽量安排在最便捷、最经济的地方。 由于土地利用总体规划对环境影响具有长期性、复杂性、综合性、有时还有不可逆转性等特点，迫切需要在编制土地利用总体规划时对规划区与土地利用有关的环境影响进行科学研究，把环境保护纳入土地利用活动的计划、决策和规划实施中，促进土地资源持续、协调的利用。为更好地进行土地利用总体规划环境影响评价必须首先建立相应的评价指标体系，而目前国内关于该项研究的理论和实践的相关报道都较少。 本论文在综述国内外土地利用总体规划环境影响评价的理论与实践的基础上，在国内第一批开展了相关领域的案例研究，采用理论研究和案例分析相结合的研究方法对土地利用总体规划环境影响评价方法和指标体系进行了研究，对邛崃市土地利用总体规划进行了环境影响评价，其研究的主要内容和论点如下: (1)第一次根据FAO 确定的五大原则，引入了生态用地的概念并按照价值模型构建了以土地资源可持续利用为目标的县级土地利用总体规划环境影响评价的指标体系。以生产性、稳定性、保护性、经济活力、社会可接受性五个方面作为指标层来度量土地利用总体规划的环境影响，并选取了土地利用率、土地整理率、水面指数、生态用地面积比例、耕地转化率、建设用地产值指数、公众满意度等21 个元指标作为具体的评价指标。该指标体系强调了规划方案的公众参与，便于充分吸收公众的意见和建议；并且评价指标获取容易，实用性较强。 (2)在土地利用总体规划环境影响评价方法上进行了有益的探索和尝试，由于土地利用总体规划环境影响评价的主要对象是几个拟定的规划方案，所以采用综合评分法（包括特尔斐法和层次分析法）和公众参与相结合的评价方法。应用上述指标体系和评价方法对邛崃市土地利用总体规划的三个方案进行了评价筛选，高方案最终得分为92.049；中方案最终得分为91.028；而低方案最终得分为95.541，为最优方案。 （3）开展了对土地利用总体规划替代方案和公众参与机制的研究，对公众参与的方式、程序及主要内容从理论和实践两方面进行了有益的尝试，收到了良好的效果。 （4）对邛崃市土地利用总体规划进行了环境影响评价，根据邛崃市的具体情况，对规划实施后可能造成的环境正、负面影响进行了分析和预测，提出了预防或者减轻不良环境影响的对策和措施。 Land use is a process, which is to develop land according to its mass property. Bycreating the wealth and improving the environment, it can meet the need of production,life and human survival. Land use planning, as a planning form to guide land use, issubject to the historical background, and influenced by development of economic andsociety. The land use planning in the past, from narrow economic technology view,lacking of concerning ecologic environmentand social problem, arranged new land in the most convenient and economic place. Because of complexity, comprehensive and sometimes irreversible characteristicsof environmental impact caused by land use planning which has been implemented, it isneed to carry on scientific research on environmental impact related to land use as theland use planning is forming, to bring environmental protection within the plan, policymaking and implementing of land use activity, promoting the sustainment, harmonious use of land resource. This paper, taking the readjustment of land use planning in Qionglai as an example,assessed its environmental impact of land use planning. The main contents and results arepresented as follows: (1) On the basis of the five criterions of AFO, for the first time propose county classoverall planning of land uses SEA index by inducting ecological land use andestablishing the Value factor system, according to Productivity criterion，Stabilitycriterion，Sheltered criterion，Economic livingness criterion，Social acceptabilitycriterion，the environmental impact of land use system was assessed by using Valuemodel. Through identifying the factors of environmental impact of land use planning, thepaper established the factor system of SEA of land use planning. From the land usefactors, 21 factors was chosen to assess the environmental impact degree of land useplanning, such as, index of land use degree, the rate of land collating, index of watersurface, the rate of ecological use land, cultivated land conversion ratio, forest landconversion ratio, public satisfaction degree and so on. These indexes make a point thatpublic participation of plan project fully absorb public idea and propose and the index easily get, better utility. (2) Attempt useful assessment method system of SEA of land use planning. In viewof there are no or almost no inevitable contact among the factors of SEA of land useplanning，we use AHP （Analytic Hierarchy Process） as the main assess method . Thereare three plans are compared in this paper apply the foregoing index and assessmentmethod. The high plan finally score is 92.049，while the middle plan is 91.028. The lowplan score is 95.541，is the best one，as the selected plan. (3) Carry on the research of the alternative scheme of overall planing of land useand public participation，to the fashion ，procedure and object matter carry out helpfulattempt from theory to practice，the results is good. （4）Took place SEA of Qionglai County overall planing of land use，according to thecircumstance of Qionglai，we analyze and forecast the positive and negative affect afterthe plan implement，and put forward the countermeasure and means to prevent or abatebad environmental impact.

若尔盖湿地公路对两栖类的生态影响

本文考察了若尔盖高寒泥炭湿地公路对高原林蛙（Rana kukunoris）、倭蛙（Narorana pleskei）和岷山蟾蜍（Bufo minshanicus）的生态影响。分析了公路对两栖动物空间分布和栖息地利用的影响，并用IBM模型探讨其可能作用机制，考察了两栖动物公路死亡的季节差异及影响公路死亡空间分布的景观因素。最后通过对若尔盖高寒湿地两栖动物陆地核心栖息地的分析，为若尔盖路域栖息地的管理提供依据。 1. 对公路周边6个沼泽水凼群进行了调查，每个样地设置5条样线（距离公路10m、20m、50m、100m和150m）。调查表明，在繁殖季节(5月)，距离公路距离对高原林蛙和倭蛙的相对数量都有显著作用，其效应明显大于其他各项栖息地环境参数。公路导致高原林蛙和倭蛙在公路周边种群密度降低，其相对数量从距离公路100m处到公路边缘一直呈现逐渐降低的趋势。在繁殖季节，若尔盖高寒湿地的公路生态影响域大约在100-150m之间，这一距离远远大于森林栖息地中公路对两栖类的生态影响域（35-40 m）。 在繁殖后期（9月），对公路周边16个草地样点的样线调查表明，公路对周边高原林蛙和倭蛙密度分布并未造成显著影响。 2. 二次模型的拟合表明繁殖季节高原林蛙和倭蛙在公路周边的密度分布符合钟型曲线。前人对森林公路两侧两栖类分布的研究也显示了类似的规律。我们通过基于个体的模型，模拟在了公路边缘100单位距离内的栖息地空间，栖息地环境质量呈梯度变化，动物个体在其中通过随机运动寻找适宜的栖息地。拟合结果表明，动物个体仅仅依照简单的运动规则寻找适宜栖息地，这种活动就可以导致公路周边栖息地中的动物分布曲线出现3个局部峰。公路周边两栖动物的钟型分布曲线可能仅仅是个体寻找适宜栖息地过程中出现的临时性群体分布模式。 3. 在若尔盖高寒湿地，公路交通造成了大量两栖类死亡。但是公路两栖类动物死亡的季节分布很不均匀：5月、8月和9月死亡数量很高，而7月和10月死亡数量却很低。这种季节性差异和两栖类各个生活史阶段的迁移运动有密切的关系。利用景观参数的逻辑斯蒂回归模型显示，距离公路1000-2000m范围内的湿草地比例对三种两栖类公路死亡概率均有很强的贡献。湿草地这一栖息地类型分类中有大量的沼泽水体，是两栖类重要的繁殖点和取食点。两栖类公路死亡概率湿草地的关系从一个侧面表明，要维持一个区域较高的两栖类种群数量，需要1000-2000m半径范围内存在大面积的湿草地。 4. 高原林蛙和岷山蟾蜍不同性别和年龄个体分布点的水体距离存在显著差异。不同种类、年龄的两栖类分布点距离水体距离的差异可能是由于对水体的依赖性造成的。而相同种类、年龄段的个体中，高原林蛙雌性、岷山蟾蜍亚成体和雌性的体重与分布点距水体距离有显著负相关，这可能是因为体重更大的个体对水体的依赖性更弱。考虑到过大的陆地核心栖息地面积在实际保护工作中存在操作上的困难，因此我们认为可以以水体周边90%个体的分布区为低限确定3种两栖类的最小陆地核心栖息地。但是，在同样的水体距离-两栖类密度分布格局下，水体的面积和分形参数对最小陆地核心栖息地半径的确定有一定影响。 Ecological effects of alpine wetland road on Rana kukunoris, Narorana pleskei, Bufo minshanicus was studied in Zoige wetland. The effects of road on distribution of amphibians and its possible underline mechanism was discussed based on empirical data and computer simulation. Road killed amphibians was surveyed in different season and those landscape factor which could have impact on road killing distribution was analyses. Core terrestrial habitat of amphibians in Zoige wetland was discussed in the consideration of conservation management. 1. Six pool groups was investigated in breeding season (May) of R. kukunoris, N. pleskei. Five transects at distance of 10m, 20m, 50m, 100m and 150m from road edge was surveyed in each pool groups. There was a significant effects of distance from road edge on relative counts of R. kukunoris, N. pleskei, which is much important than effects of other environmental factors. Road caused the density of R. kukunoris, N. pleskei decreased from distance of 100m from road to 10m from road. Road ecological effect zone of alpine wetland for amphibians is about 100-150m. It is much wider than those of forest roads, which is about 35-40m. However, studies on 16 grassland near road showed no significant effect of road on amphibians after breeding season (Sep.). 2. Quadratic model fit indicated that the distribution of R. kukunoris and N. Pleskei followed a hump like curve. Previous studies on forest road showed similar results. A 100×100 habitat with gradual environment besides road was simulated with a individual-based model, and animal seek for suitable habitat with stochastic locomotion in it. Simulation results indicated that 3 density peak of animal distribution can emergent followed a simply rules. The hump like density cure could be a temporal swarm pattern during the process of individual seeking for habitat. 3. Road traffic caused mass death of amphibians in Zoige wetland. There was much road killed amphibians in May, Aug and Sep than those in July and Oct. The fluctuation of road kill could be related with migration of amphibians between seasons. Logistic regression of landscape variables indicated that wet grassland in 1000-2000m is essential to predict the probability of road kill. Wet grassland is an important breeding and forage habitat for amphibians. It also indicated that mass wet grassland in 1000-2000m is essential for maintain a big amphibian population. 4. There was significant differences among distance from aquatic site of subadults, female and males of R. kukunoris and B. Minshanicus. Possibly, it was because of their dependence on water. There was a significant negative relationship between distance from aquatic site and individuals body mass. Estimates of core habitat that are too large may make it difficult to establish protective regulations. The smallest suitable terrestrial core habitats were defined as the terrestrial habitats used during migration to and from the wetlands, and for foraging by 90% of any life stage (adults, and subadults) in a season. However, even with the same amphibian distribution pattern along the distance from aquatic sites, the radii of smallest suitable terrestrial core habitats will be varied with the fractal parameters of aquatic site.

Alpha decay half-lives of heavy nuclei within a generalized liquid drop model

Theoretical alpha-decay half-lives of the heaviest nuclei are calculated using the experimental Q value. The barriers in the quasi-molecular shape path is determined within a Generalized Liquid Drop Model (GLDM) and the WKB approximation is used. The results are compared with calculations using the Density-Dependent, M3Y (DDM3Y) effective interaction and the Viola-Seaborg-Sobiczewski (VSS) formulae. The calculations provide consistent estimates for the half-lives of the a decay chains of these superheavy elements. The experimental data stand between the GLDM calculations and VSS ones in the most time.

Unified fission model for proton emission

The unified fission model (UFM) combining with the phenomenological assault frequency has been carried out to investigate the proton-radioactivity half-lives of spherical proton emitters. The results are in good agreement with the experimental data and other theoretical values, and newly observed spherical proton emitters have been analyzed. Finally, the effect of angular momentum transfer on half-life of proton emission has been discussed in detail and a formula can be used to describe this relationship.

A new model of phycobilisome in Spirulina platensis

Phycobilisomes (PBS) were isolated from blue-green alga Spirulina platensis. Scanning tunneling microscope was used to investigate the three-dimensional structure of PBS deposited on freshly cleaved highly oriented pyrolytic graphite (HOPG) in ambient condition at room temperature. The results showed that the rods of PBS radiated from the core to different directions in the space other than arrayed in one plane, which was different from the typical hemi-discoidal model structure. The diameter of PBS was up to 70 nm, and the rod was approximately 50 nm in length. Similar results were observed in Langmuir-Blodgett (LB) film of PBS. The dissociated PBS could reaggregate into rod-like structures and easily form two-dimensional membrane while being absorbed on HOPG, however, no intact PBS was observed. The filling-space model structure of PBS in Spirulina platensis with STM from three-dimensional real space at nanometer scale was found, which showed that this new structural model of PBS surely exists in blue-green algae and red algae. The function of this structural model of PBS was also discussed.

STUDY ON THE FORMATIONAL MECHANISM OF THE NORTHERN YELLOW (HUANGHAI) SEA COLD WATER MASS .2. DISCUSSION ON THE SOLUTION OF THE MODEL

The theoretical solution of the model of the Northern Yellow (Huanghai) Sea Cold Water Mass (NYSCWM) reveals that the NYSCWM is mainly formed through the continuous temperature increase of the overwintered water body above the Northern Yellow Sea Depression (NYSD) after spring when heat is continuously conducted from the sea surface to the deeper layer. In the NYSCWM's growing period, (June-July), nonlinear vertical convection and advection effects continuously increase, and are gradually balanced by the heat diffusion effect as the temperature increases from the surface to the bottom, which leads to the formation of an intensive thermocline and lateral front. Meanwhile, the three-dimensional circulation correspondingly occurs. In the NYSCWM's entire growing period, the horizontal circulation is always in the cyclonic motion, while the vertical circulation passes through a transition from a period with the cold centre as downwelling to a period with the cold centre as upwelling.