Chromosomal mapping of major ribosomal rRNA genes in the hard clam (Mercenaria mercenaria) using fluorescence in situ hybridization

Karyotype and chromosomal location of the major ribosomal RNA genes were studied in the hard clam (Mercenaria mercenaria Linnaeus) using fluorescence in situ hybridization (FISH). Metaphase chromosomes were obtained from early embryos. Internal transcribed spacers (ITS) between major RNA genes were amplified and used as FISH probes. The probes were labeled with digoxigenin-11-dUTP by polymerase chain reaction and detected with fluorescein-labeled anti-digoxigenin antibodies. FISH with the ITS probes produced two to four signals per nucleus or metaphase. M. mercenaria had a haploid number of 19 chromosomes with a karyotype of seven metacentric, four metacentric or submetacentric, seven submetacentric, and one submetacentric or subtelocentric chromosomes (7M + 4M/SM + 7SM + 1SM/ST). Two ITS loci were observed: one located near the centromere on the long arm of Chromosome 10 and the other at the telomere of the short arm of Chromosome 12. FISH signals on Chromosome 10 are strong and consistent, while signals on Chromosome 12 are variable. This study provides the first karyotype and chromosomal assignment of the major RNA genes in M. mercenaria. Similar studies in a wide range of species are needed to understand the role of chromosomal changes in bivalve evolution.

Homogeneous time-resolved fluoroimmunoassay of bensulfuron-methyl by using terbium fluorescence energy transfer

A sensitive homogenous time-resolved fluoroimmunoassay (TR-FIA) method for bensulfuron-methyl (BSM) based on fluorescence resonance energy transfer (FRET) from a Tb3+ fluorescent chelate with N,N,N',N'-[2,6-bis(3'-aminomethyl-1'-pyrazoly)-4-phenylpyridine] tetrakis(acetic acid) (BPTA-Tb3+) to organic dye, Cy3 or Cy3.5 has been developed. New method combined the use of BPTA-Tb3+ labeled streptavidin, Cy3 or Cy3.5 labeled anti-BSM monoclonal antibody and biotinylated BSM-BSA conjugate (BSA is bovine serum albumin) for competitive-type immunoassay. After BPTA-Tb3+ labeled streptavidin was reacted with a competitive immune reaction solution containing biotinylated BSM-BSA, BSM sample and Cy3 or Cy3.5 labeled anti-BSM monoclonal antibody, the sensitized and long-lived emission of Cy3 or Cy3.5 derived from FRET was measured, and thus the concentration of BSM in sample was calculated. The present method has the advantages of rapidity, simplicity and high sensitivity since the B/F (bound reagent/free reagent) separation steps and the solid-phase carrier are not necessary. The method gives the detection limit of 2.10 ng ml(-1). The coefficient variations of the method are less than 1.5% and the recoveries are in the range of 95-105% for BSM water sample measurement. (C) 2001 Elsevier Science B.V. All rights reserved.

Numerical solution of the incompressible Navier-Stokes equations with an upwind compact difference scheme

A new finite difference method for the discretization of the incompressible Navier-Stokes equations is presented. The scheme is constructed on a staggered-mesh grid system. The convection terms are discretized with a fifth-order-accurate upwind compact difference approximation, the viscous terms are discretized with a sixth-order symmetrical compact difference approximation, the continuity equation and the pressure gradient in the momentum equations are discretized with a fourth-order difference approximation on a cell-centered mesh. Time advancement uses a three-stage Runge-Kutta method. The Poisson equation for computing the pressure is solved with preconditioning. Accuracy analysis shows that the new method has high resolving efficiency. Validation of the method by computation of Taylor's vortex array is presented.

Perturbational Finite Volume Method For The Solution of 2-D Navier-Stokes Equations on Unstructured and Structured Colocated Meshes

Based on the first-order upwind and second-order central type of finite volume( UFV and CFV) scheme, upwind and central type of perturbation finite volume ( UPFV and CPFV) schemes of the Navier-Stokes equations were developed. In PFV method, the mass fluxes of across the cell faces of the control volume (CV) were expanded into power series of the grid spacing and the coefficients of the power series were determined by means of the conservation equation itself. The UPFV and CPFV scheme respectively uses the same nodes and expressions as those of the normal first-order upwind and second-order central scheme, which is apt to programming. The results of numerical experiments about the flow in a lid-driven cavity and the problem of transport of a scalar quantity in a known velocity field show that compared to the first-order UFV and second-order CFV schemes, upwind PFV scheme is higher accuracy and resolution, especially better robustness. The numerical computation to flow in a lid-driven cavity shows that the under-relaxation factor can be arbitrarily selected ranging from 0.3 to 0. 8 and convergence perform excellent with Reynolds number variation from 102 to 104.

Simulation of Free-Surface Flow in a Tank Using the Navier-Stokes Model and Unstructured Finite Volume Method

Modelling free-surface flow has very important applications in many engineering areas such as oil transportation and offshore structures. Current research focuses on the modelling of free surface flow in a tank by solving the Navier-Stokes equation. An unstructured finite volume method is used to discretize the governing equations. The free surface is tracked by dynamically adapting the mesh and making it always surface conforming. A mesh-smoothing scheme based on the spring analogy is also implemented to ensure mesh quality throughout the computaiton. Studies are performed on the sloshing response of a liquid in an elastic container subjected to various excitation frequencies. Further investigations are also carried out on the critical frequency that leads to large deformation of the tank walls. Another numerical simulation involves the free-surface flow past as submerged obstacle placed in the tank to show the flow separation and vortices. All these cases demonstrate the capability of this numerical method in modelling complicated practical problems.

Comparative studies of AOT and NaDEHP by fluorescence technique and z-potential (ζ) measurements

The aggregation behaviors of two surfactants with the same hydrophobic tail, sodium bis(2-ethylhexyl)sulfosuccinate (AOT) and sodium bis(2-ethylhexyl)phosphate (NaDEHP), have been investigated by the fluorescence technique and z-potential (ζ) measurements. Five fine peaks of the pyrene molecule fluorescence spectroscopy appear in the surfactant solution, and the micropolarity at which pyrene locates is monitored from the intensity ratio of the first (I1) and the third peak (I3). A wide peak around 475 nm, the emission spectra of the excimer of pyrene molecules, is observed in the NaDEHP solution, while this is not found for the AOT system. The value of I1/I3 decreases in a more limited concentration range for the AOT system than for NaDEHP, indicating that small aggregates can be more easily formed by NaDEHP molecules. The z-potential results for the aggregates formed by the two surfactants show that the interaction between AOT and PVP is stronger than that between NaDEHP and PVP.

扩散抛物化Navier-Stokes方程数值解法评述

20世纪60年代末期在边界层理论基础上发展起来的各种简化Navier-Stokes(N-S)方程(统称为扩散抛物化N-S方程)及其算法,较为彻底地解决了无黏流及黏流的相互干扰问题,并为高雷诺数大型复杂黏性流场的数值模拟开辟了新的途径.本文将系统地评述这一领域的主要成果,包括各种简化N-S模型的优缺点;数学奇性及正则化方法;代表性的数值解法以及最近几年的新进展.

Navier-Stokes方程二阶速度滑移边界条件的检验

对微尺度气体流动，Navier-Stokes方程和一阶速度滑移边界条件的结果与实验数据相比，在滑移区相互符合，在过渡领域则显著偏离，为改善Navier-Stokes方程在过渡领域的表现，有些研究者尝试引入二阶速度滑移边界条件，如Cercignani模型，Deissler模型和Beskok-Karniadakis模型．以微槽道气体流动为例，将Navier-Stokes方程在不同的二阶速度滑移模型下的结果与动理论的直接模拟Monte Carlo（DSMC）方法和信息保存（IP）方法以及实验数据进行比较．在所考察的3种具有代表性的二阶速度滑移模型中，Cercignani模型表现最好，其所给出的质量流率在Knudsen数为0．4时仍与DSMC和IP结果相符；然而，细致比较表明，Cercignani模型给出的物面滑移速度及其附近的速度分布在滑流区和过渡领域的分界处（Kn=0．1）已明显偏离DSMC和IP的结果．

高雷诺数流动的控制方程体系和扩散抛物化Navier-Stokes方程组的意义和用途

在计算机发达的时代,高雷诺(Re)数绕流计算中有无必要使用简化NS方程组,本文讨论这个问题.主要内容如下:(1)高Re数绕流包含3种基本流动:所有方向对流占优流动、所有方向对流扩散竞争流动和部分方向对流占优部分方向对流扩散竞争流动(简称干扰剪切流动),3个基本流动的特征彼此不同且在流场中所占领域大小彼此相差悬殊,NS方程区域很小,它们的最简单控制方程组Euler、Navier-Stokes(NS)和扩散抛物化(DP)NS方程组的数学性质彼此不同,因此利用Euler-DPNS-NS方程组体系分析计算高Re数绕流流动就是一个合乎逻辑的选择,该法与利用单一NS方程组的常用方法可以彼此检验和补充.(2)流体之间以及流体与外界的动量、能量和质量交换,流态从层流到湍流的演化主要发生在干扰剪切流动中,干扰剪切流及其最简单控制方程--DPNS方程组具有基础意义;DPNS方程组笔者在1967年已提出.(3)诸简化NS方程组:DPNS、抛物化(P)NS、薄层(TL)NS、黏性层(VL)NS方程组的发展、相互关系,它们的历史贡献和今后的用途;它们的数学性质均为扩散抛物型,但它们包含的黏性项彼此有所不同;从流体力学角度来看,它们中只有DPNS方程组能够准确描述干扰剪切流动.提出把诸简化NS方程组统一为DPNS方程组的建议.(4)干扰剪切流--DPNS方程组与无干扰剪切流--边界层方程组之间的关系以及进一步研究干扰剪切流的意义.

Stiction and Anti-Stiction in Mems and Nems

Stiction in microelectromechanical systems (MEMS) has been a major failure mode ever since the advent of surface micromachining in the 80s of the last century due to large surface-area-to-volume ratio. Even now when solutions to this problem are emerging, such as self-assembled monolayer (SAM) and other measures, stiction remains one of the most catastrophic failure modes in MEMS. A review is presented in this paper on stiction and anti-stiction in MEMS and nanoelectromechanical systems (NEMS). First, some new experimental observations of stiction in radio frequency (RF) MEMS switch and micromachined accelerometers are presented. Second, some criteria for stiction of microstructures in MEMS and NEMS due to surface forces (such as capillary, electrostatic, van der Waals, Casimir forces, etc.) are reviewed. The influence of surface roughness and environmental conditions (relative humidity and temperature) on stiction are also discussed. As hydrophobic films, the self-assembled monolayers (SAMs) turn out able to prevent release-related stiction effectively. The anti-stiction of SAMs in MEMS is reviewed in the last part.

Navier-Stokes(NS)方程组差分计算中的物理和网格尺度效应及NS方程组的简化

对于高Re数流动计算,在通常二阶精度NS差分格式和网格数条件下,存在某些粘性项落入修正微分方程截断误差项的问题。这类NS方程组计算实际是计算某种简化NS方程组,而且重复计算误差物理粘性项既浪费机时和内存,误差积累又会对数值解产生不可预测的影响。避免上述缺陷的办法一个是提高NS差分格式的精度 ,另一个是丢掉可能落入截断误差项的物理粘性项,把NS方程组简化为广义NS方程组。广义NS计算避免了误差物理粘性项误差积累对数值解的不可知影响,又可节省内存和机时,对高Re数流体工程计算很有好处。利用广义NS方程组计算超声速绕前向和后向台阶流动的结果表明:广义NS方程组与NS方程组的数值结果很好相符。

Simultaneous Laser-Induced Fluorescence And Contactless-Conductivity Detection For Microfluidic Chip

A combined detection system involving simultaneous LIF and contactless-conductometric measurements at the same place of the microfluidic chip was described. The LIF measurement was designed according to the confocal principle and a moveable contactless-conductivity detector was used in (CD)-D-4. Both measurements were mutually independent and advantageous in analyses of mixtures. Various experimental parameters affecting the response were examined and optimized. The performances were demonstrated by simultaneous detection of Rhodamine B. And the results showed that the combined detection system could be used sensitively and reliably. (C) 2008 Yong Yu. Published by Elsevier B.V. on behalf of Chinese Chemical Society. All rights reserved.

关于三维Navier－Stokes方程的粘性项计算

借助于张量分析和张量计算，在贴体曲线坐标系下本文讨论了不同求解变量导致了粘性项个数上的重大差异和不同大小的计算量，并提出了便于粘性计算的最佳形式。文中借助于有限体积离散技术，通过引进两个对称辅助矩阵［Ａ］和［Ｂ］，使粘性项的计算量大大减少，这对完成三维粘性流的数值计算具有重要的指导意义。借助于上述方法，本文完成了某型真实进气道两种工况的三维粘性Ｎａｖｉｅｒ－Ｓｔｏｋｅｓ方程计算（即Ｍ∞＝３．０，α＝０°和设计工况Ｍ∞＝２．６５，α＝０°），获得了满意的全场结果；对于Ｍ∞＝２．６５的设计工况，同实验数据作了比较，符合良好。由于本文的方法明显的减少了粘性项的计算量且节省了大量内存，以致于使三维流场的Ｎ－Ｓ求解能在普通微机上进行。

Stress intensity factors calculation in anti-plane fracture problem by orthogonal integral extraction method based on femol

For an anti-plane problem, the differential operator is self-adjoint and the corresponding eigenfunctions belong to the Hilbert space. The orthogonal property between eigenfunctions (or between the derivatives of eigenfunctions) of anti-plane problem is exploited. We developed for the first time two sets of radius-independent orthogonal integrals for extraction of stress intensity factors (SIFs), so any order SIF can be extracted based on a certain known solution of displacement (an analytic result or a numerical result). Many numerical examples based on the finite element method of lines (FEMOL) show that the present method is very powerful and efficient.