Temperature dependence of the distribution of the first passage time: Results from discontinuous molecular dynamics simulations of an all-atom model of the second beta-hairpin fragment of protein G

More than 22 000 folding kinetic simulations were performed to study the temperature dependence of the distribution of first passage time (FPT) for the folding of an all-atom Go-like model of the second beta-hairpin fragment of protein G. We find that the mean FPT (MFPT) for folding has a U (or V)-shaped dependence on the temperature with a minimum at a characteristic optimal folding temperature T-opt*. The optimal folding temperature T-opt* is located between the thermodynamic folding transition temperature and the solidification temperature based on the Lindemann criterion for the solid. Both the T-opt* and the MFPT decrease when the energy bias gap against nonnative contacts increases. The high-order moments are nearly constant when the temperature is higher than T-opt* and start to diverge when the temperature is lower than T-opt*. The distribution of FPT is close to a log-normal-like distribution at T* greater than or equal to T-opt*. At even lower temperatures, the distribution starts to develop long power-law-like tails, indicating the non-self-averaging intermittent behavior of the folding dynamics. It is demonstrated that the distribution of FPT can also be calculated reliably from the derivative of the fraction not folded (or fraction folded), a measurable quantity by routine ensemble-averaged experimental techniques at dilute protein concentrations.

Dependence of the Brill transition on the crystal size of nylon 10 10

Nylon 10 10 crystals, which isothermally crystallized from the molten state and cold crystallized from melt-quenched samples at various temperatures, were investigated by using temperature-variable wide angle X-ray diffraction (WAXD) and small angle X-ray scattering (SAXS). No Brill transition occurred for the melt-crystallized crystals. However, this transition was easily observed for the cold-crystallized nylon 10 10, and the transition temperature is pertinent to the crystallization temperature. The sizes of these crystals was determined by SAYS and correlated with the Brill transition temperatures (T-B). It was found that the T-B had a linear relationship with the size of crystals, which was used to predict the T-B for those crystals with thick lamella and to calculate the crystal size showing T-B below room temperature. Nylon 10 10 crystal will possess the gamma form (pseudohexagonal form) rather than the a phase at room temperature if its size becomes small enough.

A double logarithmic method for studying the adsorption effects in an irreversible electrochemical process

The adsorption of an electroinactive product greatly influences an irreversible electrochemical reaction in three ways, including self-block, self-inhibition, and self-acceleration, and changes not only the heterogeneous electron-transfer rate constant but also the modified formal potential and electron-transfer coefficient of the electrochemical reaction. In order to study these adsorption effects, a double logarithmic method was suggested to be used in processing the potential-controlled thin layer spectroelectrochemical data. The result shows three types of double logarithmic plots for three kinds of adsorption effects. These double logarithmic plots can be a diagnostic criterion of the adsorption effects and enable us to determine some thermodynamic and kinetic parameters. The combination of nonlinear regression with double logarithmic method is a convenient way to examine the suggested mechanism and to extract more information from the limited experimental data. Some examples are given to test the theoretical results. (C) 1999 The Electrochemical Society. S0013-4651(98)05-012-5. All rights reserved.

A double logarithmic method in thin-layer spectroelectrochemistry for distinction among mechanisms of an irreversible electrochemical process

A simple double logarithmic method in potential-controlled thin-layer spectroelectrochemistry for an irreversible electrochemical process has been studied by numerical analysis and examined by experimental examples. This simple algorithm has a novel function offering some important information about the mechanism of a complex electrochemical process directly from a limited amount of potential-spectrum data, and can be used to distinguish different reaction mechanisms such as E, EC, EE, as well as to determine the electron-transfer coefficient, a, and the kinetically modified E-0'. Combination of the double logarithmic method with nonlinear regression provides a powerful tool to examine the proposed mechanism and also to estimate other thermodynamic and kinetic parameters. (C) 1999 The Electrochemical Society. S0013-4651(98)06-090-X. All rights reserved.

Transport property of polyaniline and its molecular weight dependence

The electrical conductivity of polyaniline doped with camphor sulfonic acid (PAn-CSA) was studied. The results indicate that there is a critical temperature (T-c) and the temperature dependence of PAn-CSA conductivity shows metallic and semiconductor characteristics above and below T-c, respectively. The higher the molecular weight of PAn, the lower the T-c. The conductivity was enhanced remarkably when PAn-CSA film was stretched, its room temperature conductivity is up to 750 S/cm when elogonation is 60%; however, T-c was independent of elongation.

Dependence of superconducting temperature on chemical bond parameters in YBa2Cu3O6+delta (delta=0-1)

The chemical bond parameters, that is ionicities and average energy gaps, for all types of chemical bonds in YBa2Cu3O6+delta have been investigated with variation of oxygen content delta (delta = 0.0, 0.35, 0.45, 0.58, 0.64, 0.73, 0.78, 0.81, 0.95, 1.00). The theory used is the complex crystal chemical bond theory, which is the development of P-V-L theory. The two plateaus near 90 K and 60 K in superconducting transition temperatures, and the disappearance of superconductivity with the change of oxygen content, were reasonably explained by chemical bond parameters. The results also showed that the Cu-O chains play a vital role in the transition from non-superconductors to superconductors, and the highest transition temperature occurred when the plane-chain reached a coupling state. (C) 1998 Elsevier Science Ltd. All rights reserved.

Dependence of linear electro-optic coefficient on difference in the atomic sizes in zinc blende crystals

Covalent radii of the bonding elements have strong effects on the linear electro-optic coefficients of zinc blende crystals; these effects can be quantitatively determined by investigating the relation between the difference in the atomic sizes rho and the magnitude of the linear electro-optic tensor coefficient r(41). It is interesting to note that for the same cation Zn2+, Ga3+, or In3+ the magnitude of r(41) increases with increased covalent radius of the bonded anion r(beta). Especially with the increasing tendency of the parameter rho, the magnitude of r(41) of crystals that have a same cation will increase suddenly when the value of r(beta) becomes larger. (C) 1997 Academic Press.

Dependence of decaying of trapped radicals on aggregates on polyamide 1010

The decaying of free radicals in the course of heating, trapped in irradiated polyamide 1010 with different crystallinities, were investigated using an ESR technique. The decaying temperature, at which all radicals decay completely, depends on the aggregation of polyamide 1010 prior to radiation. The higher the crystallinity, the higher the temperature at which the radicals disappear. Dynamically speaking, radicals in specimens with higher crystallinity take longer to decay. (C) 1997 Elsevier Science Ltd.

A study of the dependence of ferrocene diffusion on chain length in polymer electrolytes

The diffusion rates of ferrocene have been estimated in five kinds of poly(ethylene glycol) solution, containing the electrolyte LiClO4, by using non-steady-state chronoamperometry. The D-app of ferrocene increases with increasing temperature, and the dependency of D-app on temperature obeys the Williams-Landel-Ferry equation. The D-app of ferrocene decreases with increasing polymer chain length. Both the chain length and temperature dependence conform to a simple free volume model. A relation between current and polymer chain length is suggested at room and high temperatures.

Compositional dependence of the microphase separation transition in styrene-butadiene-styrene triblock copolymer/polystyrene blends

The change in the microphase separation transition (MST) temperature of a styrene-butadiene-styrene (SBS) triblock copolymer induced by the addition of polystyrene (PS) was investigated by small-angle X-ray scattering. It was found that the transition temperature was determined from the molecular weight (M(H)) Of the added PS in relation to that of the corresponding blocks (M(A)) in the copolymer. The MST temperature decreased with added PS if M(H)/M(A) < 1/4, while it increased with added PS when M(H)/M(A) > 1/4 Analysis of the theoretical expression based on the random phase approximation showed exactly the same tendency of change in the transition temperatures as that observed experimentally. The interaction parameter, chi(SB), obtained by nonlinear fitting of the scattering profiles of SBS/PS blends in the disordered state, was found to be a function of temperature and composition. Composition fluctuations were found to exist in SBS/PS blends, increasing with increasing addition of PS but diminishing with increasing molecular weight of the added PS.

A study of the dependence of ferrocene diffusion on electrolyte concentration and size in a polymer medium using non-steady-state chronoamperometry

This article describes a quantitative study of the diffusion rate of ferrocene(Fc) dissolved in ploy(ethylene glycol)(PEG) medium containing MClO(4)(M = Li+, Na+, Bu(4)N(+), Hx(4)N(+)). The apparent diffusion coefficient D-app and the active concentration c(a) of Fc were simultaneously measured by using non-steady-state chronoamperometry. The D-app and c(a) of Fc have been estimated in PEG containing different concentrations and sizes of supporting electrolyte, and the dependence of D-app on ferrocene concentrations has been observed. The values of D-app decrease with increasing concentrations of Fc, increasing concentrations of LiClO4 or the ratio (O:Li) and also with 4 decreasing cation radius of the electrolyte. The temperature dependencies conform to a simple free volume model. The concentration and size of the counterion dependencies of the diffusion rate are similar to the behavior of their dependencies of ionic conductivity in polyelectrolyte.

Crystal structure dependence of the luminescence of rare earth ions (Ce3+, Tb3+, Sm3+) in Y2SiO5

The luminescence properties of Ce3+, Tb3+, Sm3+ and energy transfer from Ce3+ to Tb3+ were studied in two modifications of Y2SiO5 (low temperature X(1) type and high temperature X(2) type). The Ce3+ cation shows lower emission energy and larger Stokes shift in X(1)-Y2SiO5 than in X(2)-Y2SiO5, and the emission intensities of Ce3+, Tb3+, Sm3+ in the former are weaker than those in the latter. There exists an energy transfer from Ce3+ to Tb3+ in both types of Y2SiO5, and the transfer efficiency in X(2) type is higher than that in X(1) type. All of these results are discussed in relation to the crystal structure of Y2SiO5.

TEMPERATURE AND STRAIN-RATE DEPENDENCE OF FRACTURE-TOUGHNESS OF PHENOLPHTHALEIN POLYETHER KETONE

A strong strain-rate and temperature dependence was observed for the fracture toughness of phenolphthalein polyether ketone (PEK-C). Two separate crack-blunting mechanisms have been proposed to account for the fracture-toughness data. The first mechanism involves thermal blunting due to adiabatic heating at the crack tip for the high temperatures studied. In the high-temperature range, thermal blunting increases the fracture toughness corresponding to an effectively higher test temperature. However, in the low-temperature range, the adiabatic temperature rise is insufficient to cause softening and Jic increases with increasing temperature owing to viscoelastic losses associated with the p-relaxation there. The second mechanism involves plastic blunting due to shear yield/flow processes at the crack tip and this takes place at slow strain testing of the single-edge notched bending (SENB) samples. The temperature and strain-rate dependence of the plastic zone size may also be responsible for the temperature and strain-rate dependence of fracture toughness.

RHEOLOGICAL PROPERTIES FOR CONCENTRATED-SOLUTION OF CHITOSAN - DEPENDENCE OF SOLVENTS

Rheological properties for concentrated solution of chitosan were investigated in different solvents, such as HCOOH, CH3COOH, HCl and 0.2 mol.dm-3 CH3COOH+ 0.l mol.dm-3 CH3COONa aqueous solutions. It was shown that viscosities and flow behavior of the sol

TEMPERATURE RATE DEPENDENCE OF YIELD AND FRACTURE-BEHAVIOR OF PHENOLPHTHALEIN POLY(ETHER KETONE)

The rate/temperature dependence of yield stress, tensile modulus and crack opening displacement of phenolphthalein poly(ether ketone) (PEK-C) has been investigated. The rate/temperature dependence of crack opening displacement and the correlation establis