Executing SADI services in Galaxy

Background: In recent years Galaxy has become a popular workflow management system in bioinformatics, due to its ease of installation, use and extension. The availability of Semantic Web-oriented tools in Galaxy, however, is limited. This is also the case for Semantic Web Services such as those provided by the SADI project, i.e. services that consume and produce RDF. Here we present SADI-Galaxy, a tool generator that deploys selected SADI Services as typical Galaxy tools. Results: SADI-Galaxy is a Galaxy tool generator: through SADI-Galaxy, any SADI-compliant service becomes a Galaxy tool that can participate in other out-standing features of Galaxy such as data storage, history, workflow creation, and publication. Galaxy can also be used to execute and combine SADI services as it does with other Galaxy tools. Finally, we have semi-automated the packing and unpacking of data into RDF such that other Galaxy tools can easily be combined with SADI services, plugging the rich SADI Semantic Web Service environment into the popular Galaxy ecosystem. Conclusions: SADI-Galaxy bridges the gap between Galaxy, an easy to use but "static" workflow system with a wide user-base, and SADI, a sophisticated, semantic, discovery-based framework for Web Services, thus benefiting both user communities.

Caracterización del medio supergénico en el yacimiento Ni-Cu (PGE) de Aguablanca, SW Iberia. Redistribución de metales base y PGE

1 v. (pág. var.)

Política de ubicación de centrales nucleares

La cuestión nuclear, tradicionalmente tratada en su vertiente estrictamente tecnológica, tiene también importantes dimensiones de carácter no técnico que están resultando trascendentales en el proceso de aceptación e incorporación de esta tecnología a las estrategias energéticas de la humanidad. Por una parte, los llamados “usos pacíficos” del átomo arrastran el hándicap de haber nacido precedidos por los usos no pacíficos o bélicos con que esta energía se incorporó a nuestra civilización. Ambos usos alternativos permanecen inequívocamente vinculados no sólo a nivel simbólico, sino también en su escala tecnológica. Por otro lado, la energía nuclear fue promocionada en sus inicios como la gran panacea de la abundancia, impregnada de un halo salvador que intentaba borrar su ingrato y catastrófico nacimiento. Y así se presentó como la gran revolución tecnológica de nuestro siglo, de gran complejidad, perfección y sofisticación, haciéndola abordable sólo por unos pocos elegidos.

Automatically exposing OpenLifeData via SADI semantic Web Services

Background: Two distinct trends are emerging with respect to how data is shared, collected, and analyzed within the bioinformatics community. First, Linked Data, exposed as SPARQL endpoints, promises to make data easier to collect and integrate by moving towards the harmonization of data syntax, descriptive vocabularies, and identifiers, as well as providing a standardized mechanism for data access. Second, Web Services, often linked together into workflows, normalize data access and create transparent, reproducible scientific methodologies that can, in principle, be re-used and customized to suit new scientific questions. Constructing queries that traverse semantically-rich Linked Data requires substantial expertise, yet traditional RESTful or SOAP Web Services cannot adequately describe the content of a SPARQL endpoint. We propose that content-driven Semantic Web Services can enable facile discovery of Linked Data, independent of their location. Results: We use a well-curated Linked Dataset - OpenLifeData - and utilize its descriptive metadata to automatically configure a series of more than 22,000 Semantic Web Services that expose all of its content via the SADI set of design principles. The OpenLifeData SADI services are discoverable via queries to the SHARE registry and easy to integrate into new or existing bioinformatics workflows and analytical pipelines. We demonstrate the utility of this system through comparison of Web Service-mediated data access with traditional SPARQL, and note that this approach not only simplifies data retrieval, but simultaneously provides protection against resource-intensive queries. Conclusions: We show, through a variety of different clients and examples of varying complexity, that data from the myriad OpenLifeData can be recovered without any need for prior-knowledge of the content or structure of the SPARQL endpoints. We also demonstrate that, via clients such as SHARE, the complexity of federated SPARQL queries is dramatically reduced.

Synthesis, applications and reactivity of 1,2,3-triazolium salts

276 p.

Spectroscopic study of galaxies in the Herschel Reference Sample

Galaxies are clusters of millions and billions of stars dynamically stable, with gas, dust and dark matter. They are the biggest isolated objects known in the Universe . Even though they are very complex systems, today we have a clear knowledge about their evolution and about their physical phenomena. Aside from the stellar component there is a gaseous component, principally neutral Hydrogen (HI), and dust that, although is not a significant component in terms of the mass, plays an important role on the absorption phenomena. Finally, cinematic and other kind of observations suggest the existence of a spheric dark matter halo, dominant in terms of mass and more extensive than the barionic component.

Cosmological constrains on fast transition Unified Dark Matter models

In this work we show the results obtained applying a Unified Dark Matter (UDM) model with a fast transition to a set of cosmological data. Two different functions to model the transition are tested, and the feasibility of both models is explored using CMB shift data from Planck [1], Galaxy Clustering data from [2] and [3], and Union2.1 SNe Ia [4]. These new models are also statistically compared with the ACDM and quiessence models using Bayes factor through evidence. Bayesian inference does not discard the UDM models in favor of ACDM.