Accuracy in Copy Number Calling by qPCR and PRT : A Matter of DNA

7 p.

Relaciones amorosas de pareja en las trayectorias vitales de las mujeres encarceladas

[ES]La tesis doctoral analiza las experiencias amorosas de pareja de mujeres encarceladas, con el doble objetivo de visibilizar a las mujeres presas en el ámbito de las ciencias sociales y de introducir las especificidades de las mujeres encarceladas en los debates sociológicos y feministas acerca del amor. Las escasas aproximaciones al amor entre las mujeres presas han tendido a explicar sus relaciones de pareja desde el concepto de “dependencia emocional”, que, como se muestra en la tesis, presenta dos debilidades básicas, de un lado la tendencia a la psicologización y patologización de cuestiones de claro sustrato social; de otro la homogeneización de experiencias que presentan gran diversidad. Otra debilidad de ciertos análisis sobre las mujeres presas y aquellas excluidas socialmente, es que se han basado en concepciones sexistas acerca de las mujeres transgresoras como “malas mujeres”, por considerar que no cumplen con las expectativas culturales y sociales asociadas a los supuestos atributos de género. Esta tesis doctoral adopta una epistemología basada en la crítica feminista que busca modelos analíticos alejados de los estereotipos y la estigmatización de las mujeres transgresoras. Desde una perspectiva metodológica cualitativa, el trabajo de campo fue desarrollado en la cárcel de Nanclares de Oca (País Vasco) durante el 2008. Desarrollé un trabajo etnográfico de observación participante y entrevistas en profundidad semiestructuradas que elaboraban información sobre aspectos relativos a sus trayectorias de vida (familia de origen, vivienda, empleo, nivel educativo, situación penal y penitenciaria, estado de salud, etc.) y sus experiencias amorosas de pareja. En mi análisis, he rastreado la diversidad y variabilidad de las experiencias amorosas de las mujeres presas, el impacto del encarcelamiento en sus trayectorias amorosas y en la configuración de su intimidad, los elementos que hacen para estas mujeres del amor un “cautiverio”, y al mismo tiempo, las estrategias “liberadoras” que despliegan en sus desarrollos afectivos. El amor puede constituir un cautiverio para las mujeres ya que favorece la acomodación a unos roles de género que definen a las mujeres como dependientes y carentes de libertad. Al mismo tiempo, el amor se puede entender como una “estrategia emocional”, una forma de superar las consecuencias del encierro y de lograr ciertos estándares de “normalización” social, en un contexto en que se encuentran excluidas socialmente y fuertemente estigmatizadas.

Insights into mechanism kinematics for protein motion simulation

Background: The high demanding computational requirements necessary to carry out protein motion simulations make it difficult to obtain information related to protein motion. On the one hand, molecular dynamics simulation requires huge computational resources to achieve satisfactory motion simulations. On the other hand, less accurate procedures such as interpolation methods, do not generate realistic morphs from the kinematic point of view. Analyzing a protein's movement is very similar to serial robots; thus, it is possible to treat the protein chain as a serial mechanism composed of rotational degrees of freedom. Recently, based on this hypothesis, new methodologies have arisen, based on mechanism and robot kinematics, to simulate protein motion. Probabilistic roadmap method, which discretizes the protein configurational space against a scoring function, or the kinetostatic compliance method that minimizes the torques that appear in bonds, aim to simulate protein motion with a reduced computational cost. Results: In this paper a new viewpoint for protein motion simulation, based on mechanism kinematics is presented. The paper describes a set of methodologies, combining different techniques such as structure normalization normalization processes, simulation algorithms and secondary structure detection procedures. The combination of all these procedures allows to obtain kinematic morphs of proteins achieving a very good computational cost-error rate, while maintaining the biological meaning of the obtained structures and the kinematic viability of the obtained motion. Conclusions: The procedure presented in this paper, implements different modules to perform the simulation of the conformational change suffered by a protein when exerting its function. The combination of a main simulation procedure assisted by a secondary structure process, and a side chain orientation strategy, allows to obtain a fast and reliable simulations of protein motion.

Identification of Sex and Female’s Reproductive Stage in Commercial Fish Species through the Quantification of Ribosomal Transcripts in Gonads

The estimation of maturity and sex of fish stocks in European waters is a requirement of the EU Data Collection Framework as part of the policy to improve fisheries management. On the other hand, research on fish biology is increasingly focused in molecular approaches, researchers needing correct identification of fish sex and reproductive stage without necessarily having in house the histological know-how necessary for the task. Taking advantage of the differential gene transcription occurring during fish sex differentiation and gametogenesis, the utility of 5S ribosomal RNA (5S rRNA) and General transcription factor IIIA (gtf3a) in the molecular identification of sex and gametogenic stage was tested in different economically-relevant fish species from the Bay of Biscay. Gonads of 9 fish species (, Atlantic, Atlantic-chub and horse mackerel, blue whiting, bogue, European anchovy, hake and pilchard and megrim), collected from local commercial fishing vessels were histologically sexed and 5S and 18S rRNA concentrations were quantified by capillary electrophoresis to calculate a 5S/18S rRNA index. Degenerate primers permitted cloning and sequencing of gtf3a fragments in 7 of the studied species. 5S rRNA and gtf3a transcript levels, together with 5S/18S rRNA index, distinguished clearly ovaries from testis in all of the studied species. The values were always higher in females than in males. 5S/18S rRNA index values in females were always highest when fish were captured in early phases of ovary development whilst, in later vitellogenic stages, the values decreased significantly. In megrim and European anchovy, where gonads in different oogenesis stages were obtained, the 5S/18S rRNA index identified clearly gametogenic stage. This approach, to the sexing and the quantitative non-subjective identification of the maturity stage of female fish, could have multiple applications in the study of fish stock dynamics, fish reproduction and fecundity and fish biology in general.