Bacterial diseases in marine bivalves

Bivalve aquaculture is seriously affected by many bacterial pathogens that cause high losses in hatcheries as well as in natural beds. A number of Vibrio species, but also members of the genera Nocardia and Roseovarius, are considered important pathogens in aquaculture. The present work provides an updated overview of main diseases and implicated bacterial species affecting bivalves. This review focuses on aetiological agents, their diversity and virulence factors, the diagnostic methods available as well as information on the dynamics of the host-parasite relationship.

Mass mortality in bivalves and the intricate case of the Pacific oyster, Crassostrea gigas

Massive mortality outbreaks in cultured bivalves have been reported worldwide and they have been associated with infection by a range of viral and bacterial pathogens. Due to their economic and social impact, these episodes constitute a particularly sensitive issue in Pacific oyster (Crassostrea gigas) production. Since 2008, mortality outbreaks affecting C. gigas have increased in terms of intensity and geographic distribution. Epidemiologic surveys have lead to the incrimination of pathogens, specifically OsHV-1 and bacteria of the Vibrio genus, in particular Vibrio aestuarianus. Pathogen diversity may partially account for the variability in the outcome of infections. Host factors (age, reproductive status…) including their genetic background that has an impact on host susceptibility towards infection, also play a role herein. Finally, environmental factors have significant effects on the pathogens themselves, on the host and on the host-pathogen interaction. Further knowledge on pathogen diversity, classification, and spread, may contribute towards a better understanding of this issue and potential ways to mitigate the impact of these outbreaks.

Seep communities from two mud volcanoes in the deep eastern Mediterranean Sea: faunal composition, spatial patterns and environmental control

The Mediterranean Sea constitutes a unique environment to study cold-seep ecosystems due to the presence of different geodynamic settings, from an active margin along the Mediterranean Ridge (MR) to a passive margin in the Nile Deep-Sea Fan (NDSF). We attempted to identify the structure of benthic communities associated with the Napoli and Amsterdam mud volcanoes (MVs) located on the MR and to establish the links between faunal distribution and environmental conditions at different spatial scales. Comparison between the 2 MVs revealed that the faunal distribution seemed to be mainly controlled by the characteristics of the microhabitats. On both geological structures, the variability between the different microhabitats was higher than the variability observed between replicates of the same microhabitat, and the distribution of macro-fauna was apparently linked to gradients in physico-chemical conditions. The peripheral sites from Napoli were generally more oxygenated and harboured lower species richness than the active sites. The reduced sediment microhabitat from Amsterdam presented the highest methane concentrations and was mainly colonised by symbiont-bearing vesicomyid bivalves and heterotrophic dorvilleid polychaetes. Overall, a higher taxonomic diversity was observed on Napoli. Sub-stratum type was hypothesised to be the second factor influencing faunal distribution. The results of this study highlight the high heterogeneity of faunal communities associated with seep ecosystems within this region and the need to pursue investigations at various spatial and temporal scales.

Etude sanitaire de la zone 17.48 de Fouras. Charente-Maritime

Suite à la demande d’exploitation de la zone de Fouras, n°17.48 par le Comité Régional de la Conchyliculture du Poitou-Charentes (CRCPC), la Direction Départementale des Territoires et de la Mer (DDTM) a demandé la réalisation d’une étude sanitaire en vue du classement de la zone de production de coquillages pour les bivalves fouisseurs (groupe 2). Cette étude réalisée par le Laboratoire Environnement Ressources des Pertuis Charentais (LER/PC) bénéficie d’un financement de la Direction Générale de l 'Alimentation (DGAL). Basée sur les paramètres microbiologiques (Escherichia coli) et chimiques (plomb, mercure, cadmium), l’étude sanitaire a pour objectifs d'estimer la qualité microbiologique et chimique de la zone en vue du classement sanitaire de la zone par l'administration conformément aux exigences du Règlement CE n° 854/2004 ; et de déterminer la stratégie d'échantillonnage à mettre en oeuvre dans le cadre de la surveillance sanitaire régulière de cette zone suite à son classement. L’étude des informations disponibles a permis l’identification de sources de contamination potentielle et la définition d’une stratégie d’échantillonnage. Deux points de suivis ont été positionnés dans les secteurs jugés sensibles aux sources de contamination et ont été échantillonnés du 29 juillet 2011 au 4 octobre 2012. Les concentrations maximales en cadmium, mercure et plomb sont inférieures aux critères chimiques réglementaires et sont compatibles avec un classement A, B ou C. Le suivi microbiologique réalisé indique une qualité B pour chacun des deux points de suivi. La qualité de la zone semble donc homogène, et est estimée B dans son ensemble. Le point « Les Ecussons » est le plus sensible aux contaminations microbiologiques, la surveillance régulière REMI de la zone du Fier d’Ars pour le groupe 2 sera donc basée sur ce point.

Etude sanitaire de la zone 17.52 - Ronce les Bains - Barat, Charente-Maritime

Suite à la demande d'exploitation de la zone de Ronce les Bains – Barat par le Comité Régional de la Conchyliculture du Poitou-Charentes (CRCPC), la Direction Départementale du Territoire et de la Mer (DDTM) a demandé la réalisation d'une étude sanitaire en vue du classement de cette zone de production pour les bivalves fouisseurs (groupe 2). Cette étude réalisée par le Laboratoire Environnement Ressources des Pertuis Charentais bénéficie d'un financement de la Direction Générale de l'Alimentation (DGAL). Basée sur le paramètre microbiologique (Escherichia coli) et chimiques (plomb, mercure, cadmium). L'étude sanitaire a pour objectifs : d'estimer la qualité microbiologique et chimique de la zone en vue du classement sanitaire de la zone par l'administration conformément aux exigences du Règlement CE n° 854/2004 ; et de déterminer la stratégie d'échantillonnage à mettre en oeuvre dans le cadre de la surveillance sanitaire régulière de cette zone suite à son classement. L’étude des informations disponibles a permis l’identification de sources de contamination potentielle et la définition d’une stratégie d’échantillonnage. Trois points de suivi ont été positionnés dans des secteurs jugés sensibles aux sources de contamination, et ont été échantillonnés de février 2011 à janvier 2013. Les concentrations maximales en cadmium, mercure et plomb sont inférieures aux critères chimiques réglementaires et sont compatibles avec un classement A, B ou C. Le suivi microbiologique réalisé indique une qualité B pour chacun des deux points de suivi selon les seuils microbiologiques définis par le règlement (CE) n° 854/2004 (un troisième point a été arrêté au cours de l’étude pour manque de ressource). La qualité de la zone est donc estimée B dans son ensemble. Le point « Ronce » est le plus sensible aux contaminations microbiologiques, la surveillance régulière REMI de la zone de Ronce les Bains – Barat pour le groupe 2 sera donc basée sur ce point.

Etude sanitaire de la zone 17.51 de Bourgeois. Charente-Maritime.

Suite à la demande d’exploitation de la zone de Bourgeois par les professionnels, la Direction Départementale du Territoire et de la Mer (DDTM) a demandé la réalisation d’une étude sanitaire en vue du classement de cette zone de production pour les bivalves fouisseurs (groupe 2 ).Cette étude réalisée par le Laboratoire Environnement ressources des Pertuis Charentais bénéficie d’un financement de la Direction Générale de l’Alimentation (DGAL). Basée sur le paramètre microbiologique (Escherichia coli) et chimiques (plomb, mercure, cadmium), l’étude sanitaire a pour objectifs : d’estimer la qualité microbiologique et chimique de la zone en vue du classement sanitaire de la zone par l’administration conformément aux exigences du Règlement CE n° 854/2004 ; et de déterminer la stratégie d’échantillonnage à mettre en œuvre dans le cadre de la surveillance sanitaire régulière de cette zone suite à son classement. L’étude des informations disponibles a permis l’identification de sources de contamination potentielle et la définition d’une stratégie d’échantillonnage. Trois points de suivi ont été positionnés dans des secteurs jugés sensibles aux sources de contamination et ont été échantillonnés du 21 juillet 2011 au 20 août 2012. Les concentrations maximales en cadmium, mercure et plomb sont inférieures aux critères chimiques réglementaires et sont compatibles avec un classement en A, B ou C. Le suivi microbiologique réalisé indique une qualité B pour chacun des trois points de suivi selon les seuils microbiologiques définis par le règlement (CE) n° 854/2004. La qualité de la zone est donc estimée B dans son ensemble. Le point « Bonnemort » est retenu pour la surveillance régulière REMI du groupe 2 dans la zone n° 17-51 Bourgeois.

Induction of apoptosis by UV in the flat oyster, Ostrea edulis

Apoptosis is a fundamental feature in the development of many organisms and tissue systems. It is also a mechanism of host defense against environmental stress factors or pathogens by contributing to the elimination of infected cells. Hemocytes play a key role in defense mechanisms in invertebrates and previous studies have shown that physical or chemical stress can increase apoptosis in hemocytes in mollusks. However this phenomenon has rarely been investigated in bivalves especially in the flat oyster Ostrea edulis. The apoptotic response of hemocytes from flat oysters, O. edulis, was investigated after exposure to UV and dexamethasone, two agents known to induce apoptosis in vertebrates. Flow cytometry and microscopy were combined to demonstrate that apoptosis occurs in flat oyster hemocytes. Investigated parameters like intracytoplasmic calcium activity, mitochondrial membrane potential and phosphatidyl-serine externalization were significantly modulated in cells exposed to UV whereas dexamethasone only induced an increase of DNA fragmentation. Morphological changes were also observed on UV-treated cells using fluorescence microscopy and transmission electron microscopy. Our results confirm the apoptotic effect of UV on hemocytes of O. edulis and suggest that apoptosis is an important mechanism developed by the flat oyster against stress factors.

Isotope and fatty acid trends along continental shelf depth gradients: Inshore versus offshore hydrological influences on benthic trophic functioning

Anthropogenic activities and land-based inputs into the sea may influence the trophic structure and functioning of coastal and continental shelf ecosystems, despite the numerous opportunities and services the latter offer to humans and wildlife. In addition, hydrological structures and physical dynamics potentially influence the sources of organic matter (e.g., terrestrial versus marine, or fresh material versus detrital material) entering marine food webs. Understanding the significance of the processes that influence marine food webs and ecosystems (e.g., terrestrial inputs, physical dynamics) is crucially important because trophic dynamics are a vital part of ecosystem integrity. This can be achieved by identifying organic matter sources that enter food webs along inshore–offshore transects. We hypothesised that regional hydrological structures over wide continental shelves directly control the benthic trophic functioning across the shelf. We investigated this issue along two transects in the northern ecosystem of the Bay of Biscay (north-eastern Atlantic). Carbon and nitrogen stable isotope analysis (SIA) and fatty acid analysis (FAA) were conducted on different complementary ecosystem compartments that include suspended particulate organic matter (POM), sedimentary organic matter (SOM), and benthic consumers such as bivalves, large crustaceans and demersal fish. Samples were collected from inshore shallow waters (at ∼1 m in depth) to more than 200 m in depth on the offshore shelf break. Results indicated strong discrepancies in stable isotope (SI) and fatty acid (FA) compositions in the sampled compartments between inshore and offshore areas, although nitrogen SI (δ15N) and FA trends were similar along both transects. Offshore the influence of a permanently stratified area (described previously as a “cold pool”) was evident in both transects. The influence of this hydrological structure on benthic trophic functioning (i.e., on the food sources available for consumers) was especially apparent across the northern transect, due to unusual carbon isotope compositions (δ13C) in the compartments. At stations under the cold pool, SI and FA organism compositions indicated benthic trophic functioning based on a microbial food web, including a significant contribution of heterotrophic planktonic organisms and/or of SOM, notably in stations under the cold pool. On the contrary, inshore and shelf break areas were characterised by a microalgae-based food web (at least in part for the shelf break area, due to slope current and upwelling that can favour fresh primary production sinking on site). SIA and FAA were relevant and complementary tools, and consumers better medium- to long-term system integrators than POM samples, for depicting the trophic functioning and dynamics along inshore–offshore transects over continental shelves.

Climate Change Influences Carrying Capacity in a Coastal Embayment Dedicated to Shellfish Aquaculture

A spatially explicit coupled hydrodynamic-biogeochemical model was developed to study a coastal ecosystem under the combined effects of mussel aquaculture, nutrient loading and climate change. The model was applied to St Peter's Bay (SPB), Prince Edward Island, Eastern Canada. Approximately 40 % of the SPB area is dedicated to mussel (Mytilus edulis) longline culture. Results indicate that the two main food sources for mussels, phytoplankton and organic detritus, are most depleted in the central part of the embayment. Results also suggest that the system is near its ultimate capacity, a state where the energy cycle is restricted to nitrogen-phytoplankton-detritus-mussels with few resources left to be transferred to higher trophic levels. Annually, mussel meat harvesting extracts nitrogen (N) resources equivalent to 42 % of river inputs or 46.5 % of the net phytoplankton primary production. Under such extractive pressure, the phytoplankton biomass is being curtailed to 1980's levels when aquaculture was not yet developed and N loading was half the present level. Current mussel stocks also decrease bay-scale sedimentation rates by 14 %. Finally, a climate change scenario (year 2050) predicted a 30 % increase in mussel production, largely driven by more efficient utilization of the phytoplankton spring bloom. However, the predicted elevated summer temperatures (> 25 A degrees C) may also have deleterious physiological effects on mussels and possibly increase summer mortality levels. In conclusion, cultivated bivalves may play an important role in remediating the negative impacts of land-derived nutrient loading. Climate change may lead to increases in production and ecological carrying capacity as long as the cultivated species can tolerate warmer summer conditions.

Stable isotope ratios in bentho-demersal biota along a depth gradient in the bay of biscay: A multitrophic study

Although stable isotope ratios are increasingly used to investigate the trophic ecology of marine organisms, their spatial variations are still poorly understood in the coastal environment. In this study, we measured the stable isotope composition (δ13C, δ15N) of suspended particulate organic matter (SPOM) (primary producer), a suspension feeder, the great scallop Pecten maximus (primary consumer), megabenthic decapods and benthic fishes (secondary consumers) along a depth gradient (from 5m to 155m depth) across the continental shelf of the Bay of Biscay. Although the three trophic levels exhibited similar δ13C patterns along the gradient, the δ15N patterns varied between SPOM, scallops and carnivores. The δ15N difference between SPOM and scallops decreased with increasing depth, suggesting that non trophic factors may affect the stable isotope composition of scallops at deepest sampling stations. An opposed trend was found between scallops and carnivores, suggesting that the trophic level of these carnivores increased at higher depth, possibly as an adaptation to lower prey abundances. Although our results suggest that primary consumers are suitable to establish isotopic baselines in coastal environments, we stress the need for further studies aiming at characterizing the variability of stable isotopes in coastal biota, and the respective effects of baseline, trophic and metabolic factors in their isotopic composition.

Site n°5. The Pertuis Breton (Bay of Biscay) France

1.This report presents the results of a field study conducted in the ECASA test site nOS in the Pertuis Breton, France. The site is located on the Atlantic West coasts. It is open to the bay of Biscay, but is slightly protected against westerly winds. The bay has been exploited by intertidal mussels culture for centuries. 2. Within the bay, mussels (Mytilus edulis) are cultivated either by the traditional pole technique, around the bay or on longlines in the centre of the bay. The area occupied by these longline s represents 250 ha, and the resulting annual production is 1 000 tonnes of mussels. The average depth at mid tide is of 13.8 m. The sediment is sandy, with a small fraction of mud. 3. The site is subject to several regular monitoring through the local implementation of national networks aiming at protecting the environment and marine resources, on pollutants (RNO), microbiological quality of the waters (REMI), phytoplanktonic toxic species (REPHY) and growth and mortality of molluscs (REMORA). Benthic macrofauna was studied in 1976. 4. Five sampling sations were chosen along a line, starting under the longlines, and at distances of 50, 100, 200, and 400 metres from the area cultivated. A reference station was chosen in a different direction at 2300 metres of the cultivated area. Sampling methods are described in the text. _Sediments were sampled for different analyses: grain size, content in organic matter, total organic carbon and nitrogen, and phytic pigments (chlorophyll a and phaeopigments). Redox were measured in cores. The macrofauna living into the sediment was also sampled. The water column was sampled for physical (temperature, transparency) and chemical parametres, including oxygen content, salinity, organic matter, dissolved nitrogen forms, phosphates and silicates. Results from benthic macrofauna surveys indicate that there were no significant differences between the different stations and the reference station, all being classified as slightly disturbed. The bay is submitted to freshwater runoffs from two adjacent rivers. 7. The sediment is slightly modified by the culture of bivalves. Total organic carbon, total nitrogen, Eh values and pheopigments were significantly higher under the trestles than in any other stations. Other stations often did not differ from the reference station. 8. The effects of shellfish culture on the water column were. However, it was observed a small decrease of the food available to the molluscs near the rearing 9. The DEB model was able to describe and predict adequately the growth of oysters, both in the Baie des Veys and in the Loch Creran. The parametres for its use in other environment are given, but a tuning of one parametre should be performed with the help of authors. 10. Among the indicators and models for use in are as of intertidal bivalve culture, it is recommended to use the sediment quality index, TOC (Total Organic Carbon), redox and pheopigments, in surficial sediment, AMBI for the macrofauna, chlorophyll a contents and nitrogen forms in the water column, and models describing the carrying capacity, filtration rate of molluscs, and a DEB model to predict the growth of molluscs.

Ingestion of a bacterivorous ciliate by the oyster Crassostrea gigas: Protozoa as a trophic link between picoplankton and benthic suspension-feeders

The linked concepts of 'microbial loop' and 'protozoan trophic link' have been very well documented in filter-feeding microzooplankton such as copepods, but have not been applied to energy transfer to benthic suspension-feeding macrofauna, with the exception of the recent demonstration of heterotrophic flagellate assimilation by mussels. The oyster Crassostrea gigas obtains energy resources by filtering microalgae (similar to 5 to 100 mu m). However, in turbid estuaries, light-limited phytoplanktonic production cannot entirely account for oyster energy requirements. Conversely, picoplankters (<2 mu m), which are main effecters of coastal energy flow and matter cycling, are not efficiently retained by oyster filtration. Ciliate protozoal as both micro-sized cells (similar to 5 to 100 run) and bacteria grazers, may represent a major intermediary in trophic transfer between picoplankton and metazoa. The ciliate Uronema was intensely cultured and labelled, using the cyanobacteria Synechococcus as an auto-fluorescent biomarker. The labelled ciliates were offered as potential prey to oysters. We report here the first experimental evidence of a significant retention and ingestion of ciliates by oysters, supporting the role of protozoa as a realistic trophic link between picoplankters and filter-feeding bivalves and thus enhancing their potential importance in estuarine microbial food webs.

Contrat de Plan État-Région Bretagne. Relance de l'huître plate. Rapport d'avancement des travaux 1988.

Un contrat de Plan État-Région Bretagne a été signé en 1983 pour financer des recherches sur la période 1984-1988 dans le but de permettre la relance de l'élevage de l'huître plate, à la suite de la deuxième épizootie due à un protozaire, Bonamia ostreae. Ce rapport présente les travaux réalisés et les résultats acquis durant l'année 1988, dans les domaines de la pathologie (étude de la maladie et des mécanismes de défense des mollusques) de la génétique (recherche de souches résistantes), de l'épidémiologie descriptive et de la zootechnie.

Faisabilité biologique de la production de larves d'huîtres creuses Crassostrea gigas à partir d'eau de mer du site de Leucate. Convention de recherche Ifremer/Région Languedoc-Roussillon - Rapport final.

Afin de vérifier sur un site régional la présence d'une qualité d'eau de mer permettant la réalisation d'élevages larvaires d'huîtres creuses Crassostrea gigas (et/ou d'huîtres plates Ostrea edulis) sur une base régulière tout au long de l'année, une série d'élevages comparatifs a été réalisée à la Station IFREMER de Palavas, de mars 1995 à septembre 1995. Le matériel biologique nécessaire à cette comparaison est constitué de larves d'huîtres creuses Crassostrea gigas et en algues unicellulaires provenant de l'éc1oserie commerciale de la SATMAR. Les résultats obtenus démontrent la capacité de l'eau de mer du site étudié sur Leucate à supporter la production de larves d'huîtres creuses compétentes à se métamorphoser et à se fixer. Cette étude s'inscrit dans la démarche de la Région Languedoc-Roussillon et du CEPRALMAR visant à favoriser l'implantation d'une écloserie de production de Mollusques Bivalves sur le littoral méditerranéen.