Distribution of persistent organic contaminants in canyons and on the continental shelf off central California

The National Status and Trends (NS&T) Program has conducted studies to determine the spatial extent and severity of chemical contamination and associated adverse biological effects in coastal bays and estuaries of the United States since 1991. Sediment contamination in U.S. coastal areas is a major environmental issue because of its potential toxic effects on biological resources and often, indirectly, on human health. Thus, characterizing and delineating areas of sediment contamination and toxicity and demonstrating their effect(s) on benthic living resources are therefore important goals of coastal resource management at NOAA. The National Centers for Coastal Ocean Science, and the Office of National Marine Sanctuaries, in cooperation with the U.S. Geological Survey (USGS), University of California Moss Landing Marine Lab (MLML), and the Monterey Bay Aquarium Research Institute (MBARI), conducted ecosystem monitoring and characterization studies within and between marine sanctuaries along the California coast in 2002 and 2004 on the NOAA RV McArthur. One of the objectives was to perform a systematic assessment of the chemical and physical habitats and associated biological communities in soft bottom habitats on the continental shelf and slope in the central California region. This report addresses the magnitude and extent of chemical contamination, and contaminant transport patterns in the region. Ongoing studies of the benthic community are in progress and will be reported in an integrated assessment of habitat quality and the parameters that govern natural resource distributions on the continental margin and in canyons in the region.

PICES Press, Vol. 10, No. 2, July 2002

International symposium on North Pacific transitional areas [pp. 1-4] [pdf, 0.8 Mb] PICES Volunteer Observing Ship (VOS) Workshop [pp. 5-7] [pdf, 0.3 Mb] Joint meeting on Causes of marine mortality of salmon [pp. 8-9] [pdf, 0.3 Mb] The state of the western North Pacific in the second half of 2001 [pp. 10-11] [pdf, 0.5 Mb] State of the eastern North Pacific in spring 2002 [pp. 12-13] [pdf. 0.4 Mb] The status of the Bering Sea in the second half of 2001 [pp. 14-15] [pdf. 0.3 Mb] PICES Workshop on “Perturbation analysis” on subarctic Pacific gyre ecosystem models [pp. 16-17] [pdf. 0.4 Mb] Status and future plans for SOLAS-Japan [pp. 18-20] [pdf. 0.5 Mb] China-Korea Joint Ocean Research Center: A bridge across the Yellow Sea to connect Chinese and Korean oceanographic institutes and scientists [pp. 21-22] [pdf. 0.3 Mb] Persistent changes in the California Current ecosystem [pp. 23-24] [pdf. 0.2 Mb] The Hokusei Maru: 53 years of research in the Pacific [pp. 25-28] [pdf. 0.5 Mb] First meeting of the CLIVAR Pacific Panel [pp. 29-30] [pdf. 0.3 Mb] Call for contributions to the North Pacific Ecosystem Status Report [p. 31] [pdf. 0.2 Mb] PICES announcements [p. 32] [pdf. 0.2 Mb]

Invasion of Egeria into the Hawkesbury-Nepean River, Australia

The Hawkesbury-Nepean River in New South Wales (NSW), Australia, is the largest river system in the Sydney metropolitan area, and it drains most of the developing areas to the west. This catchment is under increasing pressure from urban expansion and the river frequently experiences extended periods of low flows due to a combination of extensive river regulation and the Australian temperate climate. Added to this, the river and several of its tributaries receive treated sewage and stormwater from various sources. Habitats and biota within the Hawkesbury-Nepean River catchment have been altered since European settlement and many introduced species have spread throughout the terrestrial and aquatic environment (Recher et al. 1993). Submersed macrophyte assemblages within the river have undergone significant changes in their distribution and abundance due to eutrophication, habitat alteration and changes to river flows (Recher et al 1993). Anecdotal evidence and some early unpublished studies suggest that egeria (Egeria densa Planchon), introduced from South America as an aquarium plant, was present in the Hawkesbury-Nepean River prior to 1980. Sainty (1973) reported a persistent and troublesome infestation over a number of years at Wallacia in the upper Nepean River. Here, as part of a larger study on the ecology of macrophyte and invertebrate assemblages associated with anthropogenic disturbance in the Hawkesbury-Nepean River, we document the rapid spread of egeria since 1994. Significant increases in egeria biomass were also found, and we present preliminary evidence which suggest that the native ribbonweed, vallisneria (Vallisneria americana Michx.) is being displaced.

User’s Guide to ADMB2R: A Set of AD Model Builder Output Routines Compatible with the R Statistics Language

ADMB2R is a collection of AD Model Builder routines for saving complex data structures into a file that can be read in the R statistics environment with a single command.1 ADMB2R provides both the means to transfer data structures significantly more complex than simple tables, and an archive mechanism to store data for future reference. We developed this software because we write and run computationally intensive numerical models in Fortran, C++, and AD Model Builder. We then analyse results with R. We desired to automate data transfer to speed diagnostics during working-group meetings. We thus developed the ADMB2R interface to write an R data object (of type list) to a plain-text file. The master list can contain any number of matrices, values, dataframes, vectors or lists, all of which can be read into R with a single call to the dget function. This allows easy transfer of structured data from compiled models to R. Having the capacity to transfer model data, metadata, and results has sharply reduced the time spent on diagnostics, and at the same time, our diagnostic capabilities have improved tremendously. The simplicity of this interface and the capabilities of R have enabled us to automate graph and table creation for formal reports. Finally, the persistent storage in files makes it easier to treat model results in analyses or meta-analyses devised months—or even years—later. We offer ADMB2R to others in the hope that they will find it useful. (PDF contains 30 pages)

User’s Guide to C2R: A Set of C Language Output Routines Compatible with the R Statistics Language

C2R is a collection of C routines for saving complex data structures into a file that can be read in the R statistics environment with a single command.1 C2R provides both the means to transfer data structures significantly more complex than simple tables, and an archive mechanism to store data for future reference. We developed this software because we write and run computationally intensive numerical models in Fortran, C++, and AD Model Builder. We then analyse results with R. We desired to automate data transfer to speed diagnostics during working-group meetings. We thus developed the C2R interface to write an R data object (of type list) to a plain-text file. The master list can contain any number of matrices, values, dataframes, vectors or lists, all of which can be read into R with a single call to the dget function. This allows easy transfer of structured data from compiled models to R. Having the capacity to transfer model data, metadata, and results has sharply reduced the time spent on diagnostics, and at the same time, our diagnostic capabilities have improved tremendously. The simplicity of this interface and the capabilities of R have enabled us to automate graph and table creation for formal reports. Finally, the persistent storage in files makes it easier to treat model results in analyses or meta-analyses devised months—or even years—later. We offer C2R to others in the hope that they will find it useful. (PDF contains 27 pages)

User’s Guide to For2R: A Module of Fortran 95 Output Routines Compatible with the R Statistics Language

For2R is a collection of Fortran routines for saving complex data structures into a file that can be read in the R statistics environment with a single command.1 For2R provides both the means to transfer data structures significantly more complex than simple tables, and an archive mechanism to store data for future reference. We developed this software because we write and run computationally intensive numerical models in Fortran, C++, and AD Model Builder. We then analyse results with R. We desired to automate data transfer to speed diagnostics during working-group meetings. We thus developed the For2R interface to write an R data object (of type list) to a plain-text file. The master list can contain any number of matrices, values, dataframes, vectors or lists, all of which can be read into R with a single call to the dget function. This allows easy transfer of structured data from compiled models to R. Having the capacity to transfer model data, metadata, and results has sharply reduced the time spent on diagnostics, and at the same time, our diagnostic capabilities have improved tremendously. The simplicity of this interface and the capabilities of R have enabled us to automate graph and table creation for formal reports. Finally, the persistent storage in files makes it easier to treat model results in analyses or meta-analyses devised months—or even years—later. We offer For2R to others in the hope that they will find it useful. (PDF contains 31 pages)

Comments on hydrographic and topographic LIDAR acquisition and merging with multibeam sounding data acquired in the Olympic Coast National Marine Sanctuary

In April 2005, a SHOALS 1000T LIDAR system was used as an efficient alternative for safely acquiring data to describe the existing conditions of nearshore bathymetry and the intertidal zone over an approximately 40.7 km2 (11.8 nm2) portion of hazardous coastline within the Olympic Coast National Marine Sanctuary (OCNMS). Data were logged from 1,593 km (860 nm) of track lines in just over 21 hours of flight time. Several islands and offshore rocks were also surveyed, and over 24,000 geo-referenced digital still photos were captured to assist with data cleaning and QA/QC. The 1 kHz bathymetry laser obtained a maximum water depth of 22.2 meters. Floating kelp beds, breaking surf lines and turbid water were all challenges to the survey. Although sea state was favorable for this time of the year, recent heavy rainfall and a persistent low-lying layer of fog reduced acquisition productivity. The existence of a completed VDatum model covering this same geographic region permitted the LIDAR data to be vertically transformed and merged with existing shallow water multibeam data and referenced to the mean lower low water (MLLW) tidal datum. Analysis of a multibeam bathymetry-LIDAR difference surface containing over 44,000 samples indicated surface deviations from –24.3 to 8.48 meters, with a mean difference of –0.967 meters, and standard deviation of 1.762 meters. Errors in data cleaning and false detections due to interference from surf, kelp, and turbidity likely account for the larger surface separations, while the remaining general surface difference trend could partially be attributed to a more dense data set, and shoal-biased cleaning, binning and gridding associated with the multibeam data for maintaining conservative least depths important for charting dangers to navigation. (PDF contains 27 pages.)

Poverty and aquatic resources in Vietnam: an assessment of the role and potential of aquatic resource management in poor people's livelihoods

This report seeks to discuss a variety of approaches to poverty in order to illustrate the diversity of poor people, and the range of ways in which people are poor, facilitating a broader understanding of poverty and the significance of aquatic resources in poor people’s livelihoods. This is intended to provide a balance to the general neglect of the poor in the pursuit of aquaculture development within the Fisheries sector. It is also intended that this approach to poverty will assist in the planning and targeting of aquatic resource interventions that aim to promote poverty alleviation. In its many different forms, poverty remains a persistent problem with a great number of people facing deprivation and vulnerable livelihoods. Rates of poverty alleviation also differ; whereas the Red River Delta has achieved the greatest reductions in poverty, the Mekong Delta has achieved the smallest improvements, with possible indications that inequality has increased (see 2.4). Inequality between regions persists despite progress in all regions. (PDF has 37 pages.)

Sexual Reproduction and Early Development in the Estuarine Sea Anemone, Nematostella vectensis Stephenson, 1935

This dissertation: 1) determines the factor(s) responsible for spawning induction in NematosteJla vectensis; 2) isolates, describes, and documents the source of jelly from egg masses of N. vectensis; and 3) describes N. vectensis' early development. Namatostella vectensis were maintained on a 7-day mussel feeding/water change regime over 159 days. Within 36 hours of mussel feeding/water change. 69.1% of females and 78.5% of males spawned reliably. Through manipulation of feeding, water change, oxygen and nitrogenous waste concentrations, spawning induction was found to be triggered by the oxygen concentration associated with water change, and not by feeding. Ammonia, anemones' major waste product, inhibited this induction in a concentration-dependent manner. Female N. vectensis release eggs in a persistent jellied egg mass which is unique among the Actiniaria. The major component of this egg mass jelly was a positive periodic acid-Schiffs staining, 39.5-40.5 kD glycoprotein. Antibodies developed in rabbits against this glycoprotein bound to jelly of intact egg masses and to granules (~ 2.8 IJm in diameter) present in female anemone mesenteries and their associated filaments. Antibodies did not label male tissues. Nematostella vecfensis embryos underwent first karyokinesis -60 minutes following the addition of sperm to eggs. Second nuclear division took place, followed by first cleavage, 90-120 minutes later. Each of the 4 blastomeres that resulted from first cleavage contained a single nucleus. Arrangement of these blastomeres ranged from radial to pseudospiral. Embryonic development was both asynchronous and holoblastic. Following formation of the 4-cell stage, 71% of embryos proceeded to cleave again to form an 8-cell stage. In each of the remaining 29% of embryos, a fusion of from 2-4 blastomeres resulted in 4 possible patterns which had no affect on either cleavage interval timing or subsequent development. The fusion event was not due to ooplasmic segregation. Blastomeres isolated from 4-celled embryos were regulative and developed into normal planula larvae and juvenile anemones that were 1/4 the size of those that developed from intact 4-celled embryos. Embryos exhibiting the fusion phenomenon were examined at the fine structural level. The fusion phenomenon resulted in formation of a secondary syncytium and was not a mere compaction of blastomeres.

Kabeljaukrise in der Nordsee erfordert neue bestandserhaltende Maßnahmen

The European Commission has claimed a fundamental revision of the European Common Fisheries Policy in its Green Paper (EC 2001) by highlighting the reasons of continued overfishing of a number of valuable demersal fish stocks. Quotas in excess of scientific recommendations, fleet over capacities and poor enforcement of management decisions were identified causal for major stock and yield reductions while gaps in scientific advices were also criticized. The depleted cod stock in the North Sea, Skagerrak and Eastern Channel is the most prominent example. Existing and proposed management regulations were analysed by an expert group which met with fishing industry consultations in Brussels during 28 April – 7 May 2003. Depending on compliance with new technical regulations since 2000, the cod stock and its exploitation was found only marginally effected, while whiting displayed immediately significant losses in yield over long term and short term losses in haddock yields were reversed in substantial gains, also in SSB. However, reduction in fishing effort was found more effective in recovery potential than technical changes including closed areas, for which detailed information about variation in distribution of the stocks and the fisheries are required. Such effort reductions would reduce not only landings but also unregulated discarding, which is believed to be a major reason of the failure of the management measures in mixed fisheries. Recent trends in fishing effort of European fleets could not be quantified due to persistent data deficiencies.

Fisheries management in the social domain: perspectives from Tanzania's Lake Victoria fishery

For a long time, the Tanzanian Fisheries Department has managed Tanzanian fisheries without incorporating other stakeholders within its management framework. On lake Victoria, the persistent use of illegal fishing gear and declining catches have led the government to realize that this system of fisheries management may no longer be viable, and have sought to incorporate fishing communities into the management structure. Through the creation of beach management units (BMUs), the Fisheries Departments have sought to persuade fishing communities to implement and enforce Tanzania's fishing regulations and to monitor the fishery. In this paper we explore a recently gathered data set that yields information on, amongst others, how Tanzanian fishing communities perceive the state of their resource base, how they view their relationship with the Fisheries Department, the efficacy of fishing regulations and other variables. We draw on a series of criteria developed by Ostron (1990) for institutional 'robustness' to explore various areas of institutional development on Lake Victoria, and to try and anticipate how the BMUs will fare. We argue there are many socio-political and economic factors that will determine how communities will receive and perceive their responsibilities towards government-imposed administrative structures at the local level, these will become 'socialized' such that they will vary from place to place. While this may bode well for problems of heterogeneity, it does not necessarily mean that fisheries management objective on Lake Victoria will be met

Ecophysiological perspectives of blue-green algal blooms

Blue-green algae (cyanobacteria) have had a profound and unparalled impact on the aquatic environment because of the phenomenon of bloom formation. In many countries, water management is threatened with extensive and persistent noxious blooms of blue-green algae in surface and near-surface mesotrophic and eutrophic waters. In view of this, ecological and physiological factors responsible for blue-green algal dominance are discussed. The implications of cyanobacterial blooms are highlighted and recommendations made to combat this menace

Das Klima um Grönland - 1996

Based on air temperature data from three sites of West and East Greenland, on ice charts for the area 54°N, 71°N and 20°W, 70°W, and on CTD profile observations around Greenland, the annual variability of climate is shown. Mean monthly air temperature data from Nuuk/West Greenland reveal the long-term interannual changes of air temperature anomalies. The warming trend which was observed during November, December 1995 was maintained into 1996 for about five months. Thus, spring warming of the near surface water layers, especially on the shallow bank areas off West Greenland has been favoured. As a result of mild air temperatures over most of 1996, sea ice conditions were about normal around Greenland and off eastern Canada. Subsurface observations indicate considerable warming of the 0-200 m water layer off West Greenland. The thermal anomaly of this layer amounts to +1.59K, which is the second highest value on record since the warm 1964 event. The warmer than normal conditions as recorded since November 1995 off East and West Greenland, point at intermediate warming which is characteristic of the second half of the recent decades. The long-term trend of air temperature anomalies off West Greenland points, however, still at cooling, a trend which is persistent since the early 1970s. As the potential driving mechanism for the intermediate warming in the Labrador Sea area, the sea level air pressure gradient between Iceland and the Azores is identified. The 1996 value of this gradient, the North Atlantic Oscillation (NAO) Index, is strongly negative and this represents the flow of mild air masses from the midlatitude Atlantic Ocean to the Greenland/Labrador Sea region. Accordingly, air temperature anomalies indicated unusual warming during the month of February which amounted to >2K in the region of Baffin Land, Labrador and Greenland.

Promoting women participation in fish culture enterprises - as a means of poverty alleviation in Nigeria

One major aspect of the poverty status in Nigeria is the high rate of unemployment with the attendant economic in capacity, which in turn is responsible for the persistent problem of malnutrition over the decades. This paper is focused on how women can be empowered for better productivity in fish culture enterprises, seeing that women have been active in different aspects of agricultural production. They also sustain more than half of the developing countries such as Nigeria. Some problems being encountered by would be women fish farmers and suggestions on how women participation in fish and shellfish culture enterprises can be enhanced are proffered. The major ones being those sustainable policies by the Government State ADPs and NGOs are applied to ensure adequate motivation of women for fish culture enterprises

Avian piscivores: basis for policy.

In Britain, many birds eat fish in fresh waters but only three species, cormorant, red-breasted merganser and goosander, are commonly perceived to present serious problems for freshwater fisheries. Complaints are mainly that cormorants eat large fish and that all three bird species eat so many juvenile fish, that there are subsequently fewer fish to be harvested or angled, but also that persistent predation by birds changes fish behaviour so that they are less 'catchable'. To this end, this report reviews existing information on the current status, foraging ecology, and population biology of the three bird species as background to their potential impact on fisheries. Discusses fish population dynamics within the context of predation effects. Reviews existing experimental evidence for impacts on fish populations and fisheries; and describes current legislation, discusses potential criteria for serious damage to a fishery, and suggests ways forward for NRA policy and research.