St. John, USVI mission report, NOAA/NOS/NCCOS/CCMA/Biogeography Branch, July 6 - July 17, 2009

The intent of this field mission was to continue ongoing efforts: (1) to spatially characterize and monitor the distribution, abundance and size of reef fishes, and the abundance of macroinvertebrates (conch, Diatema, lobster) within and around the waters of the Virgin Islands National Park (VIIS) and newly established Virgin Islands Coral Reef National Monument (VICR), (2) to correlate this information to in-situ data collected on associated habitat parameters, (3) to use this information to establish the knowledge base necessary for enacting management decisions in a spatial setting and (4) to establish the efficacy of those management decisions. An additional focus this year, was to evaluate a new habitat data collection method for RHA sites (MSR and some Coral Bay sites). There are concerns that the cylinder habitat data are not reflective of the fish transect habitat. To address this, we collected habitat data at 5x4 m increments along the transect in addition to data collected using the cylinder method. We are currently assessing the potential differences between these methods and preliminary results indicate that the average difference of coral cover estimates between the two methods was 4.1% (range 0-11%) based on 16 sample sites. In addition, Erinn Muller, a Nancy Foster Fellowship recipient, collaborated with the Biogeography Branch to examine the spatial distribution of coral diseases, to provide baseline information on disease prevalence over varying spatial scales and to establish spatial distributions of coral diseases around St. John.

Observaciones sobre la reproducción, desarrollo embrionario y larval de la anchoíta argentina (Engraulis anchoita)

The first studies on the problems related to the reproduction of marine fish in Argentina (SW Atlantic ocean) have been carried out with a species of great economic importance, the anchovy (Engraulis anchoita Hubbs and Marini). The spawning period of this species during the period 1963-64 has been determined. By the application of the quantitative collection method, it has been established that spawning commenced in the areas close to the coast during the first few days of September and at a water temperature of 10,3° C and reached its greatest intensity in October (up 1569 eggs/1 square metre surface water) at a temperature varying between 11,5-13,8° C. From the middle of November the anchovy continues to reproduce in a less intensive form and further out to Sea, up to at least the month of May. The intensity of reproduction reaches a peek in February, and at a water temperature of 20° C. It is believed that two physiologically distinct populations of Engraulis anchoita may exist, the first reproducing in Spring and the second in Autumn. It has been established that a daily spawning rhythm occurs, between the hours of 8 and 12 p. m. During this period it was possible to obtain mature females with which artificial fertilization was performed. The rate of development was determined, which at a temperature of 14-15° C is from 69-72 hours, and at a temperature of 19-20° C from 50-53 hours. A temperature of 49° C was found be lethal. The different embryonic and larval stages of development are illustrated diagramatically and individually described. The preliminary studies on the larvae and juveniles caught in the Sea during the period of reproduction led to the formulation of certain conclusions whith reference that the juveniles, as yet larvae, begin to group together at an early age, and the younger individuals the more uniform are the schoals whith regards to the total size of the specimens. It has shown that the anchovy during its first year of life tends to display littoral behaviour. RESUMEN EN ESPAÑOL: Los primeros estudios de los problemas referentes a la reproducción de los peces marinos en la Argentina (océano Atlántico sudoccidental) se han efectuado sobre una especie de gran importancia económica, Engraulis anchoita Hubbs y Marini. Se ha determinado la época de desove de la anchoíta en un período anual 1963-64. Aplicando el método de recolección cuantitativo se ha establecido que el desove de esta especie ha empezado en las zonas muy cercanas a la costa, en los primeros días de setiembre a la temperatura 10,3° C y ha alcanzado mayor intensidad en octubre (hasta 1569 huevos en 1 m2 de la superficie del agua) a la temperatura 11,5°-13,8° C. Desde mediados de noviembre la anchoíta sigue reproduciéndose en forma poco intensiva y más mar afuera, hasta por lo menos el mes de mayo. La intensidad de reproducción para este segundo período alcanza un pico, aunque muy pequeño en febrero a la temperatura 20° C. Se hace la suposición de que pueden existir dos de distintas características fisiológicas poblaciones de Engraulis anchoita una de reproducción primaveral y otra de reproducción otoñal. Además se ha establecido que existe un ritmo diario de desove que comprende las horas 20-24. En las horas de postura se pudo conseguir hembras maduras y con sus productos sexuales se efectuó la fecundación artificial. Se determinó la velocidad de desarrollo que a la temperatura 14°-15° C es de 69-72 horas y en la temperatura 19°- 20° C es de 50-53 horas. La temperatura 4° resultó ser letal. Se realizaron dibujos y descripciones correspondientes a los distintos estadios embrionarios y larvales. Los estudios preliminares de las larvas y juveniles de la anchoíta, capturados en el mar en la época de reproducción, permitieron sacar ciertas conclusiones sobre el crecimiento en sus primeros meses de vida. Se observó que los juveniles, larvas todavía, empiezan a agruparse muy temprano y cuanto más jóvenes son los individuos, tanto más uniformes son los cardúmenes en las dimensiones de los ejemplares. Se demostró que la anchoíta en su primer año de vida tiene costumbres muy costeras.

Manual for starch gel electrophoresis: A method for the detection of genetic variation

The procedure to conduct horizontal starch gel electrophoresis on enzymes is described in detail. Areas covered are (I) collection and storage of specimens, (2) preparation of tissues, (3) preparation of a starch gel, (4) application of enzyme extracts to a gel, (5) setting up a gel for electrophoresis, (6) slicing a gel, and (7) staining a gel. Recipes are also included for 47 enzyme stains and 3 selected gel buffers. (PDF file contains 26 pages.)

A simple method for counting bacteria with active electron transport system in water and sediment samples [Translation from: Kiel. Meeresforsch. 31(2) 83-86, 1975]

Description of a simple method for counting bacteria with active electron transport systems in water and sediment samples. Sodium succinate, NADH and NADPH served as electron donors. It is possible to see several sites of electron transport in the larger cells. Especially impressive are the plankton-algae, protozoa, and small metazoa. This is a partial translation of the ”method” section only.

Report on the collection of salmon creel census data from Rivers Ribble and Hodder

The River Ribble bailiff team completed a total of 377 salmonid creel censuses by interviewing anglers fishing on the banks of the Rivers Ribble and Hodder during 1994. The study was undertaken for a number of reasons: (i) , To determine which areas of the river were fished by anglers. (ii) To ascertain which fishing methods were used in these areas. (iii) To identify the success of each fishing method within each area of the River Ribble system. In a limited 1993 sampling programme, 55 censuses were carried out. Results from these indicated that fishing with worm as bait was the most common method (39% of anglers interviewed) and also resulted in the greatest number of salmon being caught (61% of all salmon). The 1994 census data were collected from all areas of the Ribble system during the months of June to October. The data presented here are for anglers fishing for salmon only or for those fishing for salmon and sea trout at the same time. All of the fish caught were salmon.

A Bayesian method for identification of stock mixtures from molecular marker data

Molecular markers have been demonstrated to be useful for the estimation of stock mixture proportions where the origin of individuals is determined from baseline samples. Bayesian statistical methods are widely recognized as providing a preferable strategy for such analyses. In general, Bayesian estimation is based on standard latent class models using data augmentation through Markov chain Monte Carlo techniques. In this study, we introduce a novel approach based on recent developments in the estimation of genetic population structure. Our strategy combines analytical integration with stochastic optimization to identify stock mixtures. An important enhancement over previous methods is the possibility of appropriately handling data where only partial baseline sample information is available. We address the potential use of nonmolecular, auxiliary biological information in our Bayesian model.

Collection of juvenile mullet species from a brackishwater tidal farm in Nigeria

The major constraint to the development of aquaculture in Nigeria has been the non-availability of fingerlings in required numbers of cultivable species. A specifically designed trap to collect mullet (Liza falcipinnis; Liza grandisquamis) juveniles during high tides was successful in collecting juveniles year-round. The collectors was more successful during night spring tides than during neap tides or daytime collections. Thus, the use of traps, especially in the tidal zones, could provide a cost-effective method of stocking fish farms by collecting juveniles and seed from the natural environment.

A method to improve size estimates of walleye pollock (Theragra chalcogramma) Atka mackerel (Pleurogrammus monopterygius) consumed by pinnipeds: digestion correction factors applied to bones and otoliths recovered in scats

The lengths of otoliths and other skeletal structures recovered from the scats of pinnipeds, such as Steller sea lions (Eumetopias jubatus), correlate with body size and can be used to estimate the length of prey consumed. Unfortunately, otoliths are often found in too few scats or are too digested to usefully estimate prey size. Alternative diagnostic bones are frequently recovered, but few bone-size to prey-size correlations exist and bones are also reduced in size by various degrees owing to digestion. To prevent underestimates in prey sizes consumed techniques are required to account for the degree of digestion of alternative bones prior to estimating prey size. We developed a method (using defined criteria and photo-reference material) to assign the degree of digestion for key cranial structures of two prey species: walleye pollock (Theragra chalcogramma) and Atka mackerel (Pleurogrammus monopterygius). The method grades each structure into one of three condition categories; good, fair or poor. We also conducted feeding trials with captive Steller sea lions, feeding both fish species to determine the extent of erosion of each structure and to derive condition-specific digestion correction factors to reconstruct the original sizes of the structures consumed. In general, larger structures were relatively more digested than smaller ones. Mean size reduction varied between different types of structures (3.3−26.3%), but was not influenced by the size of the prey consumed. Results from the observations and experiments were combined to be able to reconstruct the size of prey consumed by sea lions and other pinnipeds. The proposed method has four steps: 1) measure the recovered structures and grade the extent of digestion by using defined criteria and photo-reference collection; 2) exclude structures graded in poor condition; 3) multiply measurements of structures in good and fair condition by their appropriate digestion correction factors to derive their original size; and 4) calculate the size of prey from allometric regressions relating corrected structure measurements to body lengths. This technique can be readily applied to piscivore dietary studies that use hard remains of fish.