Dividing population genetic distance data with the software Partitioning Optimization with Restricted Growth Strings (PORGS): an application for Chinook salmon (Oncorhynchus tshawytscha), Vancouver Island, British Columbia

A new method of finding the optimal group membership and number of groupings to partition population genetic distance data is presented. The software program Partitioning Optimization with Restricted Growth Strings (PORGS), visits all possible set partitions and deems acceptable partitions to be those that reduce mean intracluster distance. The optimal number of groups is determined with the gap statistic which compares PORGS results with a reference distribution. The PORGS method was validated by a simulated data set with a known distribution. For efficiency, where values of n were larger, restricted growth strings (RGS) were used to bipartition populations during a nested search (bi-PORGS). Bi-PORGS was applied to a set of genetic data from 18 Chinook salmon (Oncorhynchus tshawytscha) populations from the west coast of Vancouver Island. The optimal grouping of these populations corresponded to four geographic locations: 1) Quatsino Sound, 2) Nootka Sound, 3) Clayoquot +Barkley sounds, and 4) southwest Vancouver Island. However, assignment of populations to groups did not strictly reflect the geographical divisions; fish of Barkley Sound origin that had strayed into the Gold River and close genetic similarity between transferred and donor populations meant groupings crossed geographic boundaries. Overall, stock structure determined by this partitioning method was similar to that determined by the unweighted pair-group method with arithmetic averages (UPGMA), an agglomerative clustering algorithm.

Movement of American lobster (Homarus americanus) in the southwestern Gulf of St. Lawrence

A total of 42,445 American lobsters (Homarus americanus) were tagged in thirty-one sites throughout the southwestern Gulf of St. Lawrence between 1980 and 1997. Results from the recapture of 8503 tagged lobsters showed small distances traveled between the release and the recapture position for animals ranging in size from 51 to 152 mm carapace length. The average distance traveled ranged from 2 km in parts of Baie des Chaleurs and western Cape Breton to 19 km in central Northumberland Strait. Lobsters moved generally along the shore (93% of the dispersion was in areas between the shore and the 20-m bathymetric contour). As a result, lobsters traveled longer distances in sites characterized by a gradually sloping bottom where the distance between the shore and the 20-m contour line was extensive in contrast to areas characterized by rapidly changing depths and by a relatively small amount of habitat shallower than 20 m. In the majority of sites (14 of 19) there was no significant difference between males and females in the average distance they traveled. In four of the five sites females moved farther than males. In general, the average distance traveled by berried females was shorter than that traveled by males or nonberried females. No relationship was observed between the distance traveled and the size of the animal. There was no strong evidence of a relationship between the average distance traveled and the number of days at liberty. In general, lobsters in the southwestern Gulf of St. Lawrence traveled short distances and dispersion was restricted to the nearshore habitat. Further, the distance traveled was not correlated to size, sex, or years at large. These findings show that there is little interaction between American lobsters from different fishing areas at the benthic level and that American lobster movements should have minimal consequences for management of the species in the southwestern Gulf of St. Lawrence.

Investigations on long distance transportation of fish. 3. Field trials with a dismantlable insulated galvanised iron container

The paper communicates the results of field trials conducted with a dismantlable insulated galvanised iron container designed and fabricated by the first two authors in their laboratory. Different varieties of fishes and different types of packing, namely, fresh iced, chilled iced and frozen were employed in the transportation experiments which were conducted from Kakinada to Howrah, Kakinada to New Delhi and Paradeep to Howrah. In all the experiments the container performed exceedingly well and has still remained in very trim condition.

Investigations on long distance transportation of fish. 4. A comparative study of the performance of expanded polystyrene slabs and multi-layer gunny (jute) fabric as insulants

A comparative study of the insulation efficiencies of expanded polystyrene slabs and multi-layer gunny fabric in long distance transportation of fresh iced fish was made. Used plywood boxes (second hand tea chests) were employed as containers and the experiments conducted between Kakinada and Calcutta. All the three insulants tried, namely, 25.4 mm thick expanded polystyrene slab, four and two layer gunny (jute) fabric, all sealed in 150 gauge polythene sheets, showed comparable insulation efficiencies, considering total bacterial counts, organoleptic qualities and TMA and TVN values of the transported fish as parameters.

Investigations on long distance transportation of fish. 5. Transportation of filleted and round seer fish (Scomberomorus sp.) from Kakinada to Calcutta by rail

Iced seer fish (Scomberomorus sp.) was transported by rail in expanded polystyrene insulated plywood boxes from Kakinada to Calcutta in round and fillet forms. While both withstood the rigors of transportation squarely, the fillets fetched only half the price of round fish in the auction conducted at the Calcutta market.

Transportation of fish - 1. A preliminary study on insulated containers and their efficacy in long distance transportation

Polythene lined thermocole insulated plywood boxes (second-hand tea chests) could be successfully used for transport of fresh iced fish. It was found that a minimum of 25 mm thermocole insulation was necessary during summer (April to June) and 15 mm during winter (Nov. to March). By using these insulated boxes the initial fish to ice ratio could be brought down to 1:0.75 and still further to 1:0.5 at the height of winter in Jan. and Feb. These second-hand tea chests are robust and are able to stand a minimum of 5 trips to and fro. The moulded polystyrene boxes are not suited for long distance transport. Another redeeming feature in the entire operation was that there was practically no loss of fish due to spoilage in transit. 100% of the fish transported was in acceptable condition and could be marketed. In the non-insulated boxes used by the trade, the loss due to spoilage ranged from 10% to 25%, and this could be completely eliminated by the use of these insulated boxes.

Investigations on long distance transportation of fish 1. Transportation of frozen fish from Cochin to Calcutta

Oil Sardine (Sardinella longiceps), mackerel (Rastrelliger kanagurta), cat fish (Arius sp.), threadfin bream (Nemipterus japonicus) and ribbon fish (Trichurus sp.) were frozen in glazed/unglazed blocks, packed in expanded polystyrene (EPS) insulated plywood boxes with and without additional ice and despatched in uninsulated parcel vans of trains from Cochin to Calcutta. The consignments reached the destination in excellent condition and were readily disposed off.

Change in quality of different variety of fish during long distance transportation

A study was conducted to investigate the quality of iced fish of different species during long distance transportation. Total bacterial counts showed different species to show different quality deterioration under similar handling conditions.

Dispersion, population dynamics and stock assessment of Caspian Sea prawns, genus Palaemon in Guilan Province coastal waters

Biological aspects, population dynamics and stock assessment of the Caspian Sea prawns Palaemon adspersus and Palaemon eleganse were investigated in Guilan coastal water of the Caspian Sea. Sampling was done monthly with a bottom trawl with mesh size of 3 mm in cod end in 0 - 5 m and 5 - 10 m depth in areas as Astra, Shafa Roud, Anzali, Chonchanan Chamkhaleh and Chaboksar during year 2002. Results of one year sampling showed that mean total length of Palaemon adspersus (pooled data) was 39.9±6.84 mm (X±SD) and mean wiegth was 1.133±0.67 g. The mean total length of females and males was 41.6±7.5 mm and 37.9±5.2 mm respectively and mean weight for the mentioned sexes was 1.353±0.65 g and 0.868±0.38 g respectively. There was significant differences in mean length and weight of females and males (P<0.05). The mean total annual sex ratio of males: females for this species was 1.4 and this sex ratio deviated significantly from 1:1 (X2, P<0.05) and biased towards males in the population of this species. The spawning season of Palaemon adspersus begins in April and ends in September with a peak in June . Mean fecundity of this species was 1994.5 ± 506.6 . The growth coefficients Loo and K for females were estimated as 58.5 mm and 2.3 /Year and for males as 55.9 mm and 2.6 /year respectively . The mean CPUA ( catch / Km2 ) for this species was 9.99 ± 33.2 kg / km2 and the correspondance biomass was calculated as 5067.7 kg in 0 - 10 m depth . The mean total length of Palaemon elegans (pooled data ) was 27.5 ± 5.7 mm (X±S.D) and mm and 24.01±4.18 mm respectively and mean weight for the mentioned sexes were was 0.553 ± 0.3 g and 0.237±0.15 g respectively. There was significant differences in mean length and weight of females and males (P<0.05). The mean total annual sex ratio of males:females for this species was 0.57 and in this species also sex ratio differed significantly from 1:1 (X2, P<0.05) and skewed towards females in the population of this species. The spawning season of Palaemon elegans extended from May to September with a peak in July . Mean fecundity of this species was 642.7±313.4. The growth coefficients LOO and K for females were estimated as 42.119 mm and 2.40 /Year and 33.87 mm and 2.50 /year for males respectively. The mean. CPUA ( catch/ Km2 ) for this species was 0.75±3.86 kg/km2 and the correspondance biomass was calculated as 382.1 kg in 0-10 m depth .