Population structure of pink salmon (Oncorhynchus gorbuscha) in British Columbia and Washington, determined with microsatellites

Population structure of pink salmon (Oncorhynchus gorbuscha) from British Columbia and Washington was examined with a survey of microsatellite variation to describe the distribution of genetic variation. Variation at 16 microsatellite loci was surveyed for approximately 46,500 pink salmon sampled from 146 locations in the odd-year broodline and from 116 locations in the even-year broodline. An index of genetic differentiation, FST, over all populations and loci in the odd-year broodline was 0.005, with individual locus values ranging from 0.002 to 0.025. Population differentiation was less in the even-year broodline, with a FST value of 0.002 over all loci, and with individual locus values ranging from 0.001 to 0.005. Greater genetic diversity was observed in the odd-year broodline. Differentiation in pink salmon allele frequencies between broodlines was approximately 5.5 times greater than regional differentiation within broodlines. A regional structuring of populations was the general pattern observed, and a greater regional structure in the odd-year broodline than in the even-year broodline. The geographic distribution of microsatellite variation in populations of pink salmon likely ref lects a distribution of broodlines from separate refuges after the last glaciation period.

Length and sex effects on the spatial structure of catches of Pacific halibut (Hippoglossus stenolepis) on longline gear

Field experiments were conducted to test the hypotheses that Pacific halibut (Hippoglossus stenolepis) display small-scale spatial structure within longline catches, relative to other species and empty hooks, or within-species based on sex or length. Sequential hook-by-hook inventories, along with length and sex data, were taken at thirty-one survey stations. Two-dimensional spatial statistics were used to test for 1) aggregation, defined as the clustering of individuals within a given demographic of size or sex over small intervals of distance; and 2) segregation, defined as the sequential occurrence of individuals within a given demographic of size or sex, uninterrupted by other observations, irrespective of the distance between individuals. Statistically significant structure was detected within catches that is more commonly associated with fish length than sex. Significant spatial structuring occurred at 60% of all stations tested. Significant aggregation of halibut of legal length for commercial retention (≥82 cm) was detected at 44% of stations and aggregation of sublegal-size halibut was detected at 11%. Maleand female-based aggregations were observed at 22% and 11% of stations, respectively. Significant segregation of females was observed at 20% of stations, male segregation occurred at 8% of stations, and segregation by size at 16% of stations. Understanding small-scale spatial structure within longline catches may help us interpret changes in survey and commercial catch data. If structure is generated by behavior, then observed size-at-age or relative sex-ratios may be biased relative to underlying distributions. Although physical processes such as gape limitation should remain stable over the time, dynamic processes may be spatially and temporally variabl

Population structure of chum salmon (Oncorhynchus keta) across the Pacific Rim, determined from microsatellite analysis

The Pacific Rim population structure of chum salmon (Oncorhynchus keta) was examined with a survey of microsatellite variation to describe the distribution of genetic variation and to evaluate whether chum salmon may have originated from two or more glacial refuges following dispersal to newly available habitat after glacial retreat. Variation at 14 microsatellite loci was surveyed for over 53,000 chum salmon sampled from over 380 localities ranging from Korea through Washington State. An index of genetic differentiation, FST, over all populations and loci was 0.033, with individual locus values ranging from 0.009 to 0.104. The most genetically diverse chum salmon were observed from Asia, particularly Japan, whereas chum salmon from the Skeena River and Queen Charlotte Islands in northern British Columbia and those from Washington State displayed the fewest number of alleles compared with chum salmon in other regions. Differentiation in chum salmon allele frequencies among regions and populations within regions was approximately 18 times greater than that of annual variation within populations. A regional structuring of populations was the general pattern observed, with chum salmon spawning in different tributaries within a major river drainage or spawning in smaller rivers in a geographic area generally more similar to each other than to populations in different major river drainages or geographic areas. Population structure of chum salmon on a Pacific Rim basis supports the concept of a minimum of two refuges, northern and southern, during the last glaciation, but four possible refuges fit better the observed distribution of genetic variation. The distribution of microsatellite variation of chum salmon on a Pacific Rim basis likely reflects the origins of salmon radiating from refuges after the last glaciation period.

Structure and development of a Scalesia pedunculata stand in the Galapagos Islands

Stands of Scalesia pedunculata in the Galapagos Islands often develop as single-aged cohorts following episodes of mass death and regeneration. We updated earlier studies on a stand that had regenerated soon after the 1982–3 El Niño event. We quantified stem size distribution and dispersion pattern in a 0.56 ha plot near Los Gemelos on Santa Cruz Island. The plot was dominated (95% of basal area) by S. pedunculata. The stem size distribution showed the increased mean and variance for diameter (since 1987 and 1991) expected of an aging stand. Stems averaged smaller than in 1981, just before the last mass mortality episode. Large S. pedunculata stems were regularly dispersed while smaller stems were clumped and negatively associated with larger stems, implying that intraspecific competition may be important in structuring the stand. CDF Contribution Number 1008.

The geographic basis for population structure in Fraser River chinook salmon (Oncorhynchus tshawytscha)

We surveyed variation at 13 microsatellite loci in approximately 7400 chinook salmon sampled from 52 spawning sites in the Fraser River drainage during 1988–98 to examine the spatial and temporal basis of population structure in the watershed. Genetically discrete chinook salmon populations were associated with almost all spawning sites, although gene flow within some tributaries prevented or limited differentiation among spawning groups. The mean FST value over 52 samples and 13 loci surveyed was 0.039. Geographic structuring of populations was apparent: distinct groups were identified in the upper, middle, and lower Fraser River regions, and the north, south, and lower Thompson River regions. The geographically and temporally isolated Birkenhead River population of the lower Fraser region was sufficiently genetically distinctive to be treated as a separate region in a hierarchial analysis of gene diversity. Approximately 95% of genetic variation was contained within populations, and the remainder was accounted for by differentiation among regions (3.1%), among populations within regions (1.3%), and among years within populations (0.5%).Analysis of allelic diversity and private alleles did not support the suggestion that genetically distinctive populations of chinook salmon in the south Thompson were the result of postglacial hybridization of ocean-type and stream-type chinook in the Fraser River drainage. However, the relatively small amount of differentiation among Fraser River chinook salmon populations supports the suggestion that gene flow among genetically distinct groups of postglacial colonizing groups of chinook salmon has occurred, possibly prior to colonization of the Fraser River drainage.

Microalgal community structure in experimental carp-pangasiid catfish polyculture ponds

Microalgal community structure in experimental carp-pangasiid catfish polyculture ponds under four different stocking rates (treatments) each with three replications in the Field Laboratory of the Faculty Fisheries, Bangladesh Agricultural University, Mymensingh was studied. A total of 38 microalgal genera were identified under four major groups: 18 genera belong to Chlorophyceae, 9 to Cyanophyceae, 8 to Bacillariophyceae and 3 to Euglenophyceae. Chlorophyceae was abundant in all treatments followed by Cyanophyceae, Bacillariophyceae and Euglenophyceae throughout the study period. The cell densities of total microalgal population varied between 51.66x10^3 cells/L in June in T1 and 126.4x10^3 cells/L in August in T2. The appearance of Microcysris, Oscillatoria, Gomphospheria, Hildenbrandia, Chlorella, Scenedesmus, Cyclotella, Navicula, Nitzschia, Euglena and Phacus as dominant genera throughout the study period may related to sufficient nutrient availability, good light conditions and high growth rate of these genera. Water quality parameters of the experimental ponds were within suitable range for microalgal production and fish culture though the nutrient (nitrate-nitrogen and phosphate-phosphorus) concentrations were high. The factors involved in structuring a phytoplankton community arise from the relationship generated by physical, chemical and biological conditions especially the stocked planktivorous carps. Microalgal bloom formation is very common in pangasiid catfish monoculture ponds but in the present study bloom was not formed and the algal species diversity was found to be slightly increased with the study period. The introduction carps of carps in the experimental ponds might have helped in controlling the microalgal bloom formation and maintenance of the species diversity.