Broughton Archipelago Clam Terrace Survey : final report

During a 1995 aerial video survey of the coastline of Johnstone Strait, an unusual shoreline feature was noted and termed “clam terraces” (inset) because of the terrace-type morphology and the apparent association with high clam productivity on the sandflats. Typical alongshore lengths of the terrace ridges are 20-50m, and across-shore widths are typically 20-40m. An area with an especially high density of clam terraces was noted in the Broughton Archipelago, between Broughton and Gilford Islands of southeastern Queen Charlotte Strait. Clam terraces in this area were inventoried from the aerial video imagery to quantify their distribution. The terraces accounted for over 14 km of shoreline and 365 clam terraces were documented. A three-day field survey by a coastal geomorphologist, archeologist and marine biologist was conducted to document the features and determine their origin. Nine clam terraces were surveyed. The field observations confirmed that: the ridges are comprised of boulder/cobblesized material, ridge crests are typically in the range of 1-1.5m above chart datum, sandflats are comprised almost entirely of shell fragments (barnacles and clams) and sandflats have very high shellfish production. There are an abundance of shell middens in the area (over 175) suggesting that the shellfish associated with the terraces were an important food source of aboriginal peoples. The origin of the ridges is unknown; they appear to be a relict feature in that they are not actively being modified by present-day processes. The ridges may be a relict sea-ice feature, although the mechanics of ridge formation is uncertain. Sand accumulates behind the ridge because the supply rate of the shell fragments exceeds the dispersal rate in these low energy environments. The high density areas of clam terraces correspond to high density areas of shell middens, and it is probable that the clam terraces were subjected to some degree of modification by aboriginal shellfish gatherers over the thousands of years of occupation in the region. (Document contains 39 pages)

High-Temperature Effects on Growth and Propagule Formation in Hydrilla Biotypes

In consecutive greenhouse studies, growth and propagule formation were examined first in monoecious hydrilla [Hydrilla verticillata (L.f.) Royle], then in dioecious hydrilla, at three temperature levels (25, 30, and 35 C) and contrasted over three periods of growth (8, 12 and 16 wks). Each biotype was grown under natural photoperiods, decreasing from 14 hrs (in Oct, Nov, and Dec). For both biotypes, total biomass and root-to-shoot ratios were significantly reduced at 35 C; greater biomass was produced both at 25 and 30C. Increases in growth period generally enhanced total biomass and shoot production; however, shoot length was unresponsive to growth periods beyond 8 wks. The 35C treatment strongly impeded tuber formation and eliminat4ed the production of axillary turions; the number and biomass of these propagules peaked at lower temperatures under short photoperiods after 12 to 16 wks. Shoot elongation was stimulated with increases in temperature and was especially pronounced in the dioecious biotype. Notably, in the monoecious biotype, the number of shoots as a potential source of fragments, and tuber production (although reduced) occurred at relatively high levels under unfavorably hihg-temperature (35C) conditions. These results suggest that monoecious hydrilla may be better adapted to high temperatures than previously shown, and that the distribution of both biotypes in the U.S. could overlap further in southern states.

Vegetative Spread of Dioecious Hydrilla Colonies in Experimental Ponds

Stolon formation and fragmentation are two vegetative mechanisms by which hydrilla colonies expand. These two mechanisms of spread were studied in ponds located in Lewisville, TX over a two-year period. Stolons were determined to be the predominant mechanism for localized expansion in undisturbed areas. While some fragments were produced, they accounted for only 0.1% of the establishment of rooted plants in new quadrats. Peak production of fragments occurred in October and November, with fragment densities of 0.15 N m-2 d-1. Expansion by stolons occurred between June and November of each year, with higher rates of spread (up to 4.0 cm d-1 radial growth) observed in the second season.

Rapid identification of European (Anguilla anguilla) and North American eel (Anguilla rostrata) by polymerase chain reaction.

A rapid and cost effective DNA test is described to identify European eel (Anguilla anguilla) and North American eel (Anguilla rostrata). By means of polymerase chain reaction (PCR) technique parts of the mitochondrial cytochrome b gene are amplified with species specific primers which are designed to produce PCR fragments of different characteristic sizes for European and American eel. The size differences can easily be made visible by agarose gel electrophoresis

Fish species identification in Canned Tuna by DNA Analysis (PCR-SSCP)

DNA in canned tuna is degraded into short fragments of a rew hundred base pairs. The polymerase chain reaction (PCR) was used to amplify short sequences of mitochondrial DNA, which were denatured and analysed by polyacrylamide gel electrophoresis (native PAGE) for detection of single strand conformation polymorphisms. Species specific patterns of DNA bands were obtained for a number of tuna and bonito species. DE: In Thunfischkonserven liegt die DNA in Form kurzkettiger Fragmente von wenigen Hundert Basenpaaren Länge vor. Mit Hilfe der Polymerase-Kettenreaktion (PCR) wurden kurze Sequenzen der mitochondrialen DNA vervielfältigt. Anschließend wurde die gebildete DNA in Einzelsträngen überführt, die durch eine native Polyacrylamidgel-Elektrophorese (PAGE) aufgetrennt wurde. Für eine Reihe von Thunfischen und Boniten ergaben die Einzelstränge artspezifische Bandenmuster, die auf unterschiedliche Konformationen der DNA-Stränge der einzelnen Fischarten zurückzuführen sind.

Evidence of algae in the excrement of ducks. [Translation from: Hydrobiologia 1 22-27, 1948. ]

In the extremely severe winter of 1946-47 the surface of the Pfaffikersee (near Zurich) lay under an unbroken seal of ice for a full three months. The number of wild ducks resting in this location was estimated to be about 400. Six samples of excrements of ducks were microscopically analysed and fragments of algae were identified. These analyses allow the expert to specify with definite certainty the feeding areas under investigation of the studied birds.

A key to selected rockfishes (Sebastes spp.) based on mitochondrial DNA restriction fragment analysis

Larval and juvenile rockfishes (Sebastes spp.) are difficult to identify using morphological characters. We developed a key based on sizes of restriction endonuclease fragments of the NADH dehydrogenase-3 and -4 (ND3/ND4) and 12S and 16S ribosomal RNA (12S/16S) mitochondrial regions. The key makes use of variation in the ND3/ND4 region. Restriction endonuclease Dde I variation can corroborate identifications, as can 12S/16S variation. The key, based on 71 species, includes most North American taxa, several Asian species, and Sebastolobus alascanus and Helicolenus hilgendorfi that are closely related to rockfishes. Fifty-eight of 71 rockfish species in our database can be distinguished unequivocally, using one to five restriction enzymes; identities of the remaining species are narrowed to small groups: 1) S. polyspinis, S. crameri, and S. ciliatus or variabilis (the two species could not be distinguished and were considered as a single species) ; 2) S. chlorostictus, S. eos, and S. rosenblatti; 3) S. entomelas and S. mystinus; 4)S. emphaeus, S. variegatus, and S. wilsoni; and 5) S. carnatus and S. chrysomelas.

Length-weight relationships for some important forage crustaceans from South Africa

The diet of marine animals is usually determined by stomach content analysis. Although partially digested prey fragments can often be identified to species level, it is difficult to estimate the original mass of the prey organism. This information, however, is essential for calculating both the total food intake as well as the relative contribution of each prey item. In this study we present regression equations that can be used to estimate the original mass of 18 common South African crustaceans from various indigestible fragments such as the carapace (length and width), chelae (length and width of left and right dactylus) and eye (length and width).

Microbial community analysis of Acropora palamata mucus swabs, water and sediment samples from Hawksnest Bay, St. John, U.S. Virgin Islands

Colonies of the scleractinian coral Acropora palmata, listed as threatened under the US Endangered Species Act in 2006, have been monitored in Hawksnest Bay, within Virgin Islands National Park, St. John, from 2004 through 2010 by scientists with the US Geological Survey, National Park Service, and the University of the Virgin Islands. The focus has been on documenting the prevalence of disease, including white band, white pox (also called patchy necrosis and white patches), and unidentified diseases (Rogers et al., 2008; Muller et al., 2008). In an effort to learn more about the pathologies that might be involved with the diseases that were observed, samples were collected from apparently healthy and diseased colonies in July 2009 for analysis. Two different microbial assays were performed on Epicentre Biotechnologies DNA swabs containing A. palmata coral mucus, and on water and sediment samples collected in Hawksnest Bay. Both assays are based on polymerase chain reaction (PCR) amplification of portions of the small rRNA gene (16S). The objectives were to determine 1) if known coral bacterial pathogens Serratia marcescens (Acroporid Serratiosis), Vibrio coralliilyticus (temperature-dependent bleaching, White Syndrome), Vibrio shiloi (bleaching, necrosis), and Aurantimonas coralicida (White Plague Type II) were present in any samples, and 2) if there were any differences in microbial community profiles of each healthy, unaffected or diseased coral mucus swab. In addition to coral mucus, water and sediment samples were included to show ambient microbial populations. In the first test, PCR was used to separately amplify the unique and diagnostic region of the 16S rRNA gene for each of the coral pathogens being screened. Each pathogen test was designed so that an amplified DNA fragment could be seen only if the specific pathogen was present in a sample. A positive result was indicated by bands of DNA of the appropriate size on an agarose gel, which separates DNA fragments based on the size of the molecule. DNA from pure cultures of each of the pathogens was used as a positive control for each assay.

Resiliencia en crestas de arrecifes coralinos del este del golfo de Batabanó, Cuba, y factores determinantes probables

RESUMEN Se comparó el grado de resiliencia de seis crestas arrecifales del este del golfo de Batabanó, Cuba. Tres fueron del norte del golfo de Cazones (Tramo Norte) y las restantes, del oeste de Cayo Largo (Tramo Sur). Las del primer tramo fueron las de faro Cazones, Norte de la cresta de cayo Diego Pérez y de faro Diego Pérez. Las otras tres fueron las de cayo Rico, arrecifes Los Ballenatos y arrecifes Hijos de Los Ballenatos. Se emplearon los indicadores biológicos del Protocolo AGRRA. El Tramo Norte presentó las crestas más resilientes, sobre todo la de faro Cazones. Las del Tramo Sur no exhibieron resiliencia. Fueron varios e interrelacionados, los factores aparentemente más determinantes en la resiliencia. Entre estos, cuatro se consideraron como fuerzas motrices: resguardo contra el oleaje, circulación habitual giratoria ciclónica en la ensenada de Cazones, entrada de nutrientes provenientes tanto de la ciénaga de Zapata como de aguas profundas, y abundancia del erizo herbívoro Diadema antillarum. Los demás factores, desencadenados por los anteriores y también interrelacionados, fueron, al parecer la menor afectación por oleaje y sedimentos, estabilización de fragmentos vivos de coral, índices favorables de macroalgas bentónicas, cierta retención de nutrientes y plancton, más alimentación heterotrófica de los corales, mayor auto reclutamiento de corales y del erizo Diadema; mejores condiciones para el asentamiento y viabilidad de los reclutas, y para el recapamiento de corales; mayor crecimiento y recuperación de los corales y mejores condiciones térmicas contra el blanqueamiento de corales ABSTRACT The degree of resilience of six reef crest sites was compared at the east of the Gulf of Batabano, Cuba. Three of them were located north of the Gulf of Cazones (Northern Stretch), while the remaining ones were west of Cayo Largo (Southern Stretch). Those of the Northern Stretch were “Faro Cazones”, north of the crest of cayo Diego Pérez and “Faro Diego Pérez”. The remaining sites were those of the cayo Rico, Los Ballenatos reefs, and Hijos de Los Ballenatos reefs. The AGRRA biological indicators were applied. The Northern Stretch presented the most resilient crests, mainly that of “Faro Cazones”. Those of the Southern Stretch did not reveal signs of resilience. Several interrelated factors were apparently more linked to resilience. Four of them were considered as driving forces: shelter from waves, usual cyclonic revolving water circulation in the Ensenada de Cazones, nutrient input from the Zapata swamp and deep water, and the abundance of the herbivore sea urchin Diadema antillarum. Triggered by these driving forces, the remaining factors apparently were less effect of waves and sediments, stabilization of live coral fragments, favorable benthic macro-algae indices, some retention of nutrient and plankton, increased coral heterotrophic feeding; better conditions for recruit settlement and viability, and for coral re-sheeting; faster coral growth and recuperation and better thermal conditions against coral bleaching.

Hybridization between two serranids, the coney (Cephalopholis fulva) and the creole-fish (Paranthias furcifer), at Bermuda

Intergeneric hybridization between the epinepheline serranids Cephalopholis fulva and Paranthias furcifer in waters off Bermuda was investigated by using morphological and molecular characters. Putative hybrids, as well as members of each presumed parent species, were analyzed for 44 morphological characters and screened for genetic variation at 16 nuclear allozyme loci, two nuclear (n)DNA loci, and three mitochondrial (mt)DNA gene regions. Four of 16 allozyme loci, creatine kinase (CK-B*), fumarase (FH*), isocitrate dehydrogenase (ICDH-S*), and lactate dehydrogenase (LDH-B*), were unique in C. fulva and P. furcifer. Restriction fragments of two nuclear DNA intron regions, an actin gene intron and the second intron in the S7 ribosomal protein gene, also exhibited consistent differences between the two presumed parent species. Restriction fragments of three mtDNA regions—ND4, ATPase 6, and 12S/16S ribosomal RNA—were analyzed to identify maternal parentage of putative hybrids. Both morphological data and nuclear genetic data were found to be consistent with the hypothesis that the putative hybrids were the result of interbreeding between C. fulva and P. furcifer. Mean values of 38 morphological characters were different between presumed parent species, and putative hybrids were intermediate to presumed parent species for 33 of these characters. A principal component analysis of the morphological and meristic data was also consistent with hybridization between C. fulva and P. furcifer. Thirteen of 15 putative hybrids were heterozygous at all diagnostic nuclear loci, consistent with F1 hybrids. Two putative hybrids were identified as post-F1 hybrids based on homozygosity at one nuclear locus each. Mitochondrial DNA analysis showed that the maternal parent of all putative hybrid individuals was C. fulva. A survey of nuclear and mitochondrial loci of 57 C. fulva and 37 P. furcifer from Bermuda revealed no evidence of introgression between the parent species mediated by hybridization.

Deepwater prawns and lobsters off the Kerala coast

Majority of the prawn catch of the Kerala coast comes from the inshore regions within the 10 fathom line. A bottom deposit formed of fine mud rich in humus is found to be the ideal condition for the penaeid prawns. Similarly the lobster is observed in large numbers at localised areas very near the coast in the crevices of rocks. Though it has been observed that prawns and lobsters exist in deep water as well under different conditions, our knowledge about these forms along the Indian coasts is very scanty, being restricted to the works of Spence Bate, Alcock, De Man and Ramadan. Recently, during the cruises of the University Research Vessel Conch off the Kerala Coast (1958-1963) two species of deep water prawns and one species of lobster were collected from depths 100 - 180 fathoms. Of these, Penaeopsis philippi is found in large numbers occupying an almost continuous bed extending from Anjengo to Mangalore, while P. rectacutus has a restricted appearance between Cochin and Calicut. However, some sort of year to year variation has also been observed regarding the abundance of the species at various stations. Peurulus sewelli has a more restricted distribution, the maximum number being found between Puvar and Cochin. Attempt has been made to correlate the occurrence of the species with the hydrological conditions at the bottom and the nature of the substratum. It is observed that Peurulus sewelli occupies a more or less hard bed formed of sand with shell fragments or stones and small percentage of silt, the bottom temperature at the stations varying from 11°C to l4°C. P. sewelli is a more or less permanent inhabitant of the edge of the continental shell off the Kerala Coast worthy of attention for detailed investigation with a view to explore the possibilities of commercial exploitation.

The 66 k-Da protein identified as a light meromyosin is involved in the setting of surimi

The 66 kilo-Dalton (k-Da) protein split off from the cross linked myosin heavy chain (CMHC) formed due to the setting of Alaska pollack surimi, frozen-storage of Pacific cod flesh, and vinegar-curing of Pacific mackerel mince was identified as a light meromyosin (LMM). Puncture and stress-relaxation tests showed that the actomyosin subunits (AMS) of Alaska pollack surimi, upon setting at 30°C, transformed into gel, although the elasticity of this gel was very low when compared to the gels from surimi or actomyosin (AM). Electrophoretic studies showed that the band due to LMM in the gel from AMS gradually disappeared with the progress of setting but higher molecular weight polymer did not form. The intensity of the bands due to other myosin sub-fragments decreased a little. The findings suggest that at setting temperature, LMM of MHC molecule leads to an unfolding resulting in an intramolecular aggregation through non-covalent interactions, and thus plays a significant role in the crosslinking of MHC.

Cultivation of Gracilaria lichenoides in Puttalam Lagoon

A brief description is given of experimental rearing of the red alga G. lichenoides using a coir net frame method. Frames of 1x1 m were made and tied to bamboo poles which were planted in water; the frame was fixed at a level about 1 ft below the water level. 2 cm fragments were used as propagating material. Plants were found to grow more luxuriantly and were more greenish than using other methods, and in addition were free from extraneous matter such as sand. The regeneration time of the plant is low, and it reaches marketable size in 3-4 months.

Distribution of Cu, Zn, Pb and Cd in some recent molluscan shells from Lake Mariut sediment

Shells and shell fragments were the principal constituents of the core sediment taken from LakeMariut. Their trace metals were studied to assess their contribution to environmental adjustment. The results indicated that the shells of Biomphalaria alexandrina, Mercierella enigmatica and Melanoida tuberculate contain higher amounts of Cu and Zn than the widely distributed shells of Lucina sp. and Cerastoderma edule. The Pb contents found in different types of shells were higher than the other metals. The Cd contents found in different shell types were the most important fraction in comparison to the total Cd in the sediments of the lake. The relationship between the concentrations of trace metals and mineralogical analysis revealed that lead tended to be more concentrated in aragonite than in calcite.