Determination of population structure and stock composition of chum salmon (Oncorhynchus keta) in Russia determined with microsatellites

Variation at 14 microsatellite loci was examined in 34 chum salmon (Oncorhynchus keta) populations from Russia and evaluated for its use in the determination of population structure and stock composition in simulated mixed-stock fishery samples. The genetic differentiation index (Fst) over all populations and loci was 0.017, and individual locus values ranged from 0.003 to 0.054. Regional population structure was observed, and populations from Primorye, Sakhalin Island, and northeast Russia were the most distinct. Microsatellite variation provided evidence of a more fine-scale population structure than those that had previously been demonstrated with other genetic-based markers. Analysis of simulated mixed-stock samples indicated that accurate and precise regional estimates of stock composition were produced when the microsatellites were used to estimate stock compositions. Microsatellites can be used to determine stock composition in geographically separate Russian coastal chum salmon fisheries and provide a greater resolution of stock composition and population structure than that previously provided with other techniques.

Age- and length-at-maturity of female arrowtooth flounder (Atheresthes stomias) in the Gulf of Alaska

Arrowtooth flounder (Atheresthes stomias) has had the highest abundance of any groundfish species in the Gulf of Alaska since the 1970s (Matarese et al., 2003; Turnock et al., 2005; Blood et al., 2007); however, commercial catches have been restricted because Pacific halibut (Hippoglossus stenolepis) are caught as bycatch in the fishery. Arrowtooth flounder plays a key role in the ecosystem because it is a dominant organism within the food web, both as an apex predator of fish and invertebrates, as well as an important prey for walleye pollock (Theragra chalcogramma; Aydin et al., 2002). Walleye pollock is the dominant groundfish in the Bering Sea, a principal groundfish in the Gulf of Alaska, and the primary prey for marine mammals. The distribution of arrowtooth flounder extends from Cape Navarin and the eastern Sea of Okhotsk in Russia, across the Bering Sea, Aleutian Islands, Gulf of Alaska, and south to the coast of central California (Shuntov, 1964; Britt and Martin, 2001; Chetvergov, 2001; Weinberg et al., 2002; Zenger, 2004). Because of the importance of arrowtooth flounder in the marine ecosystem of A laska, a maturity study of this species was undertaken to determine age-at-maturity, which is essential for age-based stock management models. Before these results, management has had to rely upon a length-at-maturity-based estimate (Zimmermann, 1997) to manage stocks in the Gulf of Alaska (GOA), Bering Sea, and Aleutian Islands. The central GOA was selected as the location for this maturity study Age- and length-at-maturity of female arrowtooth flounder (Atheresthes stomias) in the Gulf of Alaska because it contains approximately 70% of the total Gulf of Alaska arrowtooth flounder biomass (1.9×106 t, age 3 and older)— the highest percentage in the world (Shuntov, 1964; Britt and Martin, 2001; Weinberg et al., 2002; Wilderbuer and Nichol, 2006).

Joint Anglo-Soviet biological surveillance exercise on River Dnieper

As one part of an on-going programme concerned with environmental protection as provided for under the terms of a UK/USSR Joint Environmental Protection Agreement signed in London, 21 May 1974, a seminar — ”The elaboration of the scientific basis for monitoring the quality of surface water by hydrobiological indices” was held at Valdai in Russia 12—14 July, 1976. As a continuation of this theme it was agreed that delegations of hydrobiologists from each side should carry out reciprocal visits to carry out comparative field tests on selected systems of biological surveillance in use in the respective countries. In May 1978 a team of British hydrobiologists visited the USSR, under the auspices of the Department of Environment, to carry out joint exercises on the River Dnieper and some tributaries. This paper reports the results of selected methods used by the British side when applied to the conditions found in the River Dnieper.

Annual report 2005 - North Pacific Marine Science Organization (PICES). Fourteenth meeting, Vladivostok, Russia, September 29-October 9, 2005

Report of Opening Session (pdf 0.07 Mb) Report of Governing Council (pdf 0.2 Mb) Report of the Finance and Administration Committee (pdf 0.07 Mb) Reports of Science Board and Committees Science Board inter-sessional meeting (pdf 0.07 Mb) Science Board (pdf 0.1 Mb) Biological Oceanography Committee (pdf 0.2 Mb) Fishery Science Committee (pdf 0.04 Mb) Marine Environmental Quality Committee (pdf 0.06 Mb) MONITOR Technical Committee (pdf 0.05 Mb) Physical Oceanography and Climate Committee (pdf 0.06 Mb) Technical Committee on Data Exchange (pdf 0.04 Mb) Reports of Sections, Working and Study Groups Section on Ecology of harmful algal blooms in the North Pacific (pdf 0.03 Mb) Section on Carbon and Climate Working Group 18 on Mariculture in the 21st century - The intersection between ecology, socio-economics and production (pdf 0.06 Mb) Working Group 19 on Ecosystem-based management science and its application to the North Pacific (pdf 0.03 Mb) Reports of the Climate Change and Carrying Capacity Program Implementation Panel on the CCCC Program (pdf 0.04 Mb) CFAME Task Team (pdf 0.04 Mb) MODEL Task Team (pdf 0.04 Mb) Reports of Advisory Panels Advisory Panel on Iron Fertilization Experiment in the Subarctic Pacific Ocean (pdf 0.04 Mb) Advisory Panel on Marine Birds and Mammals (pdf 0.03 Mb) Advisory Panel on Micronekton Sampling Inter-Calibration experiment (pdf 0.05 Mb) Summary of Scientific Sessions and Workshops (pdf 0.2 Mb) Membership List (pdf 0.07 Mb) List of Participants (pdf 0.07 Mb) List of Acronyms (pdf 0.03 Mb)

Annual report 1999 - North Pacific Marine Science Organization (PICES). Eighth meeting, Vladivostok, Russia, October 8-17, 1999

Report of Opening Session (pdf 124 KB) Report of Governing Council Meetings (pdf 67 KB) Reports of Science Board and Committees: Science Board (pdf 56 KB) Biological Oceanography Committee (pdf 27 KB) Fishery Science Committee (pdf 53 KB) Working Group 12: Crabs and Shrimps Marine Environmental Quality Committee (pdf 92 KB) Working Group 8: Practical Assessment Methodology Physical Oceanography and Climate Committee (pdf 64 KB) Working Group 13: CO2 in the North Pacific Implementation Panel on the CCCC Program (pdf 51 KB) Technical Committee on Data Exchange (pdf 31 KB) Publication Committee (pdf 21) Finance and Administration: Report of the Finance and Administration Committee (pdf 40 KB) Assets on 31st of December, 1998 Income and Expenditures for 1998 Budget for 2000 Composition of the Organization (pdf 27 KB) List of Participants (pdf 94 KB) List of Acronyms (pdf 13 KB)

Harmful algal blooms in the PICES region of the North Pacific

Foreword Background and objectives [pdf, 0.84 MB] Country reviews and status reports Section I. Western North Pacific Japan Yasuwo Fukuyo, Ichiro Imai, Masaaki Kodama and Kyoichi Tamai Red tides and harmful algal blooms in Japan [pdf, 0.7 MB] People's Republic of China Tian Yan, Ming-Jiang Zhou and Jing-Zhong Zou A national report of HABs in China [pdf, 0.24 MB] Republic of Korea Sam Geun Lee, Hak Gyoon Kim, Eon Seob Cho and Chang Kyu Lee Harmful algal blooms (red tides): Management and mitigation in Korea [pdf, 0.27 MB] Russia Tatiana Y. Orlova, Galina V. Konovalova, Inna V. Stonik, Tatiana V. Morozova and Olga G. Shevchenko Harmful algal blooms on the eastern coast of Russia [pdf, 1.4 MB] Section II. Eastern North Pacific Canada F.J.R. "Max" Taylor and Paul J. Harrison Harmful marine algal blooms in western Canada [pdf, 0.87 MB] United States of America Vera L. Trainer Harmful algal blooms on the U.S. west coast [pdf, 0.5 MB] Mexico Jose L. Ochoa, S. Lluch-Cota, B.O. Arredondo-Vega, E. Nuñes-Vázquez, A. Heredia-Tapia, J. Pérez-Linares and R. Alonso-Rodriguez Marine Biotoxins and harmful algal blooms in Mexico's Pacific littora [pdf, 0.2 MB] Summary and conclusions [pdf, 0.6 MB] Appendices A. Members of the Working Group [pdf, 0.1 MB] B. Original terms of reference (Vladivostok, 1999) [pdf, 0.08 MB] C. Annual reports of WG 15 [pdf, 0.15 MB] D. Workshop report on taxonomy and identification of HAB species and data management [pdf, 0.15 MB] (Document pdf contains 156 pages)

Review of World literature on Water Chestnut with implications for management in North America

Water chestnut (Trapa natans L.,sensu lato) is an annual, floating-leaved aquatic plant of temperate and tropical freshwater wetlands, rivers, lakes, ponds, and estuaries. Native to Eurasia and Africa, water chestnut has been widely gathered for its large nutritious seed since the Neolithic and is cultivated for food in Asia. Water chestnut is now a species of conservation concern in Europe and Russia. Introduced to the northeastern United States in the mid-1800s, the spread of water chestnut as a nuisance weed was apparently favored by cultural eutrophication. Water chestnut is considered a pest in the U.S. because it forms extensive, dense beds in lakes, rivers, and freshwater-tidal habitats.

Internationaler Rotbarschsurvey auf den ozeanischen Sebastes mentella in der Irminger See unter isländischer, deutscher und russischer Beteiligung

A hydroacoustic survey on the oceanic redfish (oceanic Sebastes mentella) in the Irminger Sea and adjacent waters South and East of Greenland was carried out by Iceland, Germany and Russia. During this, about 250 000 nm2 were covered. The acoustic assessment yielded a stock size of approximately 1.6 x 10(6) tonnes or 2.6 x 10(9) individuals. This however, is considered to be an underestimation of the stock, as a result of partial mixing of the stock with the scattering layer. The oceanic redfish concentrations were densest at 200-300 m depth, mainly within temperatures of 3.5 °C to 5 °C. 61 % of the stock were males at an average length of 36 cm and an average weight of 582 g.

On the ecology of species belonging to the genus Mesocyclops Sars (Crustacea, Copepoda) dwelling in the water-bodies of the Urals and Pri-Ural territory. [Translation from: Zoologicheskie Zhurnal 44(1) 127-130, 1965. ]

In the waterbodies of central Russia, the Urals and western Siberia four species of Crustacea, related to the genus Mesocyclops, are widely distributed: M. (s.str.) leuckarti (Claus), M. (Thermocyclops) oithonoides Sars, [M.](Th.) crassus (Fisch.) and M. (Th.) dybowskii (Lande). Numbers and biomass of Mesocyclops oithonoides in the pelagic water of various water-bodies of the Urals are presented and observations on the above mentioned species are discussed.

The content of organic matter in some waters in the Moscow region [Translation from: C.R. Acad. Soc. URSS, 61, 293-296, 1948]

There is at the moment no direct method of determining the organic matter content of natural waters. In 1940/41 8 different water bodies in central Russia were studied and their organic matter identified. The author concludes that there is currently no easy method to determine organic matter in water. A number methods need to be applied.

Charles Henry Gilbert (1859-1928), Naturalist-in-Charge: the 1906 North Pacific Expedition of the Steamer Albatross

Fishery science pioneers often faced challenges in their field work that are mostly unknown to modern biologists. Some of the travails faced by ichthyologist and, later, fishery biologist Charles Henry Gilbert (1859-1928) during his service as Naturalist-in-Charge of the North Pacific cruise ofthe U.S. Bureau of Fisheries Steamer Albatross in 1906, are described here, as are accomplishments of the cruise. The vessel left San Francisco, Calif., on 3 May 1906, just after the great San Francisco earthquake, for scientific exploration of waters of the Aleutian islands, Bering Sea, Kamchatka, Sakhalin, and Japan, returning to San Francisco in December. Because the expedition occurred just after the war between Japan and Russia of 1904-05 floating derelict mines in Japanese waters were often a menace. Major storms caused havoc in the region, and the captain of the Albatross, Lieutenant Commander LeRoy Mason Garrett (1857-1906), U.S.N., was lost at sea, apparently thrown from the vessel during a sudden storm on the return leg of the cruise. Despite such obstacles, Gilbert and the Albatross successfully completed their assigned chores. They occupied 339 dredging and 48 hydrographic stations, and discovered over 180 new species of fishes and many new species of invertebrates. The expedition's extensive biological collections spawned over 30 descriptive publications, some of which remain today as standards of knowledge.

The genetic diversity of Acipenser stellatus populations in the Caspian Sea was studied using microsatellite technique

A total of 361 caudal fin samples were collected from adult A. stellatus specimens caught in the north Caspian Sea, including specimens from Kazakhstan (Ural River), Russia (Volga River), Azerbaijan (Kura River), specimens caught in the south Caspian Sea including specimens from Fishery Zone 1 (from Astara to Anzali), Fishery Zone 2 (from Anzali to Ramsar), Fishery Zone 3 (from Nowshahr to Babolsar), Fishery Zone 4 (from Miyankaleh to Gomishan) as well as from specimens caught in Turkmenistan (all specimens were collected during the sturgeon stock assessment survey). About 2 g of fin tissue was removed from each caudal fin sample, stored in 96% ethyl alcohol and transferred to the genetic laboratory of the International Sturgeon Research Institute. Genomic DNA was extracted using phenol-chloroform method. The quality and quantity of DNA was assessed using 1% Agarose gel electrophoresis and Polymerase Chain Reaction (PCR) was conducted on the target DNA using 15 paired microsatellite primer. PCR products were electrophoresed on polyacrylamide gels (6%) that were stained using silver nitrate. Electrophoretic patterns and DNA bands were analyzed with BioCapt software. Allele count and frequency, genetic diversity, expected heterozygosity and observed heterozygosity allele number, and the effective allele number, genetic similarity and genetic distance, FST and RST were calculated. The Hardy Wienberg Equilibrium based on X2 and Analysis of Molecular Variance (AMOVA) at 10% confidence level was calculated using the Gene Alex software. Dendrogram for genetic distances and identities were calculated using TFPGA program for any level of the hierarchy. It is evident from the results obtained that the 15 paired primers studied, polymorphism was observed in 10 pairs in 12 loci, while one locus did not produce DNA bands. Mean allele number was 13.6. Mean observed and expected heterozygosity was 0.86 and 0.642, respectively. It was also seen that specimens from all regions were not in Hardy Wienberg Equilibrium in most of the loci (P≤0.001). Highest Fst (0.063) was observed when comparing specimens from Fishery Zone 2 and Fishery Zone 4 (Nm=3.7) and lowest FST (0.028) was observed when comparing specimens from the Volga River and those from the Ural River (8.7). Significant differences (P<0.01) were observed between RST recorded in the specimens studied. Highest genetic distance (0.604) and lowest genetic resemblance (0.547) were observed between specimens from Fishery zones 2 and 4. Lowest genetic distance (0.311) and highest genetic resemblance (0.733) was observed between specimens from Turkmenistan and specimens from Fishery zone 1. Based on the genetic dendrogeram tree derived by applying UPGMA algorithm, A. stellatus specimens from Fishery zone 2 or in other words specimens from the Sepidrud River belong to one cluster which divides into two clusters, one of which includes specimens from Fishery zones 1, 3 and 4 and specimens from Turkmenistan while the other cluster includes specimens from Ural, Volga and Kura Rivers. It is thus evident that the main population of this species belongs to the Sepidrud River. Results obtained from the present study show that at least eight different populations of A. stellatus are found in the north and south Caspian Sea, four of which are known populations including the Ural River population, the Volga River population, the Kura River population and the Sepidrud River populations. The four other populations identified belonging to Fishery zones 1, 3, and 4 and to Turkmenistan are most probably late or early spawners of the spring run and autumn run of each of the major rivers mentioned. Specific markers were also identified for each of the populations identified. The Ural River population can be identified using primers Spl-68, 54b and Spl-104, 163 170, 173, the Volga River population can be identified using primers LS-54b and Spl-104, 170, 173 113a and similarly the population from the Kura River can be identified using primers LS-34, 54b and Spl-163, 173 and that from the Sepidrud River can be identified using primers LS-19, 34, 54b and Spl-105, 113b. This study gives evidence of the presence of different populations of this species and calls for serious measures to be taken to protect the genetic stocks of these populations. Considering that the population of A. stellatus in Fishery zone 2 is an independent population of the Sepidrud River in the Gilan Province, the catch of these fishes in the region needs to be controlled and regulated in order to restore the declining stocks of this species.