Automated, objective texture segmentation of multibeam echosounder data - Seafloor survey and substrate maps from James Island to Ozette Lake, Washington Outer Coast

Without knowledge of basic seafloor characteristics, the ability to address any number of critical marine and/or coastal management issues is diminished. For example, management and conservation of essential fish habitat (EFH), a requirement mandated by federally guided fishery management plans (FMPs), requires among other things a description of habitats for federally managed species. Although the list of attributes important to habitat are numerous, the ability to efficiently and effectively describe many, and especially at the scales required, does not exist with the tools currently available. However, several characteristics of seafloor morphology are readily obtainable at multiple scales and can serve as useful descriptors of habitat. Recent advancements in acoustic technology, such as multibeam echosounding (MBES), can provide remote indication of surficial sediment properties such as texture, hardness, or roughness, and further permit highly detailed renderings of seafloor morphology. With acoustic-based surveys providing a relatively efficient method for data acquisition, there exists a need for efficient and reproducible automated segmentation routines to process the data. Using MBES data collected by the Olympic Coast National Marine Sanctuary (OCNMS), and through a contracted seafloor survey, we expanded on the techniques of Cutter et al. (2003) to describe an objective repeatable process that uses parameterized local Fourier histogram (LFH) texture features to automate segmentation of surficial sediments from acoustic imagery using a maximum likelihood decision rule. Sonar signatures and classification performance were evaluated using video imagery obtained from a towed camera sled. Segmented raster images were converted to polygon features and attributed using a hierarchical deep-water marine benthic classification scheme (Greene et al. 1999) for use in a geographical information system (GIS). (PDF contains 41 pages.)

The age and growth of the tongue sole Cynoglossus canariensis (Steind 1882)

The geometric mean regression equation for the weight; length relationship of Cynoglossus canariensis was W = 0.0025 L super(3.1770). The Von Bertalanffy constants Woo, Loo, K, and to were 507.5852 g, 47.3683 cm, 0.3333 and 0.1397 for males and 839.0753 g, 54.4720 cm, 0.3062 and 0.1737 for females. Total mortality coefficient Z ranged from 0.6482 and 0.8021

Ceratium hirundinella (O.F.Mull.) Bergh. 1882 [Translation from: Flora Slodkowodna Polski. Tom 4. Cryptophyceae, Dinophyceae, Raphidoiphyceae p395-400. Warsaw, Polska Academia Nauk, 1974]

Morphological observations of the dinoflagellate Ceratium hirundinella are given and a key to the difference in types provided. Illustrations are included.

Croissance et détermination de l'âge par lecture d'écailles d'un poisson plat de Côte d'Ivoire, Cynoglossus canariensis (Steind. 1882)

Cynoglossus canariensis has a very rapid growth. The rate of the males is 0,36 and the female one is 0,32. The asymptotic size is 55,0cm for the females and 50,5cm for the males. Females and males younger than three years (40cm), which represent 90 per cent of the Côte d'Ivoire stock have a similar growth, so the average equation: Lt=53,5 (1-e -0,34(t+1)) will be used.

Stanford University’s John Otterbein Snyder: Student, Collaborator, and Colleague of David Starr Jordan and Charles Henry Gilbert

John Otterbein Snyder (1867–1943) was an early student of David Starr Jordan at Stanford University and subsequently rose to become an assistant professor there. During his 34 years with the university he taught a wide variety of courses in various branches of zoology and advised numerous students. He eventually mentored 8 M.A. and 4 Ph.D. students to completion at Stanford. He also assisted in the collection of tens of thousands of fish specimens from the western Pacific, central Pacific, and the West Coast of North America, part of the time while stationed as “Naturalist” aboard the U.S. Fish Commission’s Steamer Albatross (1902–06). Although his early publications dealt mainly with fish groups and descriptions (often as a junior author with Jordan), after 1910 he became more autonomous and eventually rose to become one of the Pacific salmon, Oncorhynchus spp., experts on the West Coast. Throughout his career, he was especially esteemed by colleagues as “a stimulating teacher,” “an excellent biologist,” and “a fine man.

A Century of Copepods: The U.S. Fisheries Steamer Albatross

The marine invertebrates of North America received little attention before the arrival of Louis Agassiz in 1846. Agassiz and his students, particularly Addison E. Verrill and Richard Rathbun, and Agassiz's colleague Spencer F. Baird, provided the concept and stimulus for expanded investigations. Baird's U.S. Commission of Fish and Fisheries (1871) provided a principal means, especially through the U.S. Fisheries Steamer Albatross (1882). Rathbun participated in the first and third Albatrossscientific cruises in 1883-84 and published the fist accounts of Albatross parasitic copepods. The first report of Albatross planktonic copepods was published in 1895 by Wilhelm Giesbrecht of the Naples Zoological Station. Other collections were sent to the Norwegian Georg Ossian Sars. The American Charles Branch Wilson eventually added planktonic copepods to his extensive published works on the parasitic copepods from the Albatross. The Albatross copepods from San Francisco Bay were reported upon by Calvin Olin Esterly in 1924. Henry Bryant Bigelow accompanied the last scientific cruise of the Albatross in 1920. Bigelow incorporated the 1920 copepods into his definitive study of the plankton of the Gulf of Maine. The late Otohiko Tanaka, in 1969, published two reviews of Albatross copepods. Albatross copepods will long be worked and reworked. This great ship and her shipmates were mutually inspiring, and they inspire us still.

Charles H. Gilbert, Pioneer Ichthyologist and Fishery Biologist

Charles Henry Gilbert (Fig. 1) was a pioneer ichthyologist and, later, fishery biologist of particular significance to natural history of the western United States. Born in Rockford, Illinois on 5 December 1859, he spent his early years in Indianapolis, Indiana, where, in 1874, he came under the influence of his high school teacher, David Starr Jordan (1851-1931). Gilbert graduated from high school in 1875, and when Jordan became a professor of natural history at Butler University in Irvington, Indiana, Gilbert followed, and received his B.A. degree in 1879. Jordan moved to Indiana University, in Bloomington, in the fall of 1879, and Gilbert again followed, earning his M.S. degree in 1882 and his Ph.D. in 1883 in zoology. His doctorate was the first ever awarded by Indiana University.

Charles Henry Gilbert (1859-1928), Naturalist-in-Charge, and Chauncey Thomas, Jr. (1850-1919), Commanding: Conflict Aboard the U. S. Fish Commission Steamer Albatross in 1902

Charles Henry Gilbert (1859-1928) was a pioneering ichthyologist who made major contributions to the study of fishes of the American West. As chairman of the Department ofZoology at Leland Stanford Junior University in Palo Alto, Calif., during 1891-1925, Gilbert was extremely devoted to his work and showed little patience with those ofa different mindset. While serving as Naturalist-in-Charge of the U.S. Fish Commission Steamer Albatross during her exploratory expedition to the Hawaiian Islands in 1902, Gilbert engaged in an acrimonious feud with the ship's captain, Chauncey Thomas, Jr. (1850-1919), U.S.N., over what Gilbert perceived to be an inadequate effort by the captain. This essay focuses on the conflict between two strong figures, each operatingf rom different world views, and each vying for authority. Despite the difficulties these two men faced, the voyage of the Albatross in 1902 must be considered a success, as reflected by the extensive biological samples collected, the many new species of animals discovered, and the resulting publication of important scientific papers.

Charles Henry Gilbert (1859-1928), Naturalist-in-Charge: the 1906 North Pacific Expedition of the Steamer Albatross

Fishery science pioneers often faced challenges in their field work that are mostly unknown to modern biologists. Some of the travails faced by ichthyologist and, later, fishery biologist Charles Henry Gilbert (1859-1928) during his service as Naturalist-in-Charge of the North Pacific cruise ofthe U.S. Bureau of Fisheries Steamer Albatross in 1906, are described here, as are accomplishments of the cruise. The vessel left San Francisco, Calif., on 3 May 1906, just after the great San Francisco earthquake, for scientific exploration of waters of the Aleutian islands, Bering Sea, Kamchatka, Sakhalin, and Japan, returning to San Francisco in December. Because the expedition occurred just after the war between Japan and Russia of 1904-05 floating derelict mines in Japanese waters were often a menace. Major storms caused havoc in the region, and the captain of the Albatross, Lieutenant Commander LeRoy Mason Garrett (1857-1906), U.S.N., was lost at sea, apparently thrown from the vessel during a sudden storm on the return leg of the cruise. Despite such obstacles, Gilbert and the Albatross successfully completed their assigned chores. They occupied 339 dredging and 48 hydrographic stations, and discovered over 180 new species of fishes and many new species of invertebrates. The expedition's extensive biological collections spawned over 30 descriptive publications, some of which remain today as standards of knowledge.

James's rule and causes and consequences of a latitudinal cline in the demography of John's Snapper (Lutjanus johnii) in coastal waters of Australia

Demographic parameters were derived from sectioned otoliths of John’s Snapper (Lutjanus johnii) from 4 regions across 9° of latitude and 23° of longitude in northern Australia. Latitudinal variation in size and growth rates of this species greatly exceeded longitudinal variation. Populations of John’s Snapper farthest from the equator had the largest body sizes, in line with James’s rule, and the fastest growth rates, contrary to the temperature-size rule for ectotherms. A maximum age of 28.6 years, nearly 3 times previous estimates, was recorded and the largest individual was 990 mm in fork length. Females grew to a larger mean asymptotic fork length (L∞) than did males, a finding consistent with functional gonochorism. Otolith weight at age and gonad weight at length followed the same latitudinal trends seen in length at age. Length at maturity was ~72–87% of L∞ and varied by ~23% across the full latitudinal gradient, but age at first maturity was consistently in the range of 6–10 years, indicating that basic growth trajectories were similar across vastly different environments. We discuss both the need for complementary reproductive data in age-based studies and the insights gained from experiments where the concept of oxygen- and capacity-limited thermal tolerance is applied to explain the mechanistic causes of James’s rule in tropical fish species.