A collection of empirical relations for use in ecological modelling

This study summarizes previously published and updated empirical relations for the estimation of production/biomass ratios in benthic invertebrates; of natural mortality in benthic invertebrates and finfish; and of respiration from production and vice versa in animal populations. AMS-EXCEL spreadsheet containing these equations is available from the author via Email. They are also included in the Ecopath with Ecosim software.

Testable models of aquatic systems: A NERC special topic for integrating experiments and modelling

A major part of the support for fundamental research on aquatic ecosystems continues to be provided by the Natural Environment Research Council (NERC). Funds are released for ”thematic” studies in a selected special topic or programme. ”Testable Models of Aquatic Ecosystems” was a Special Topic of the NERC, initiated in 1995, the aim of which was to promote ecological modelling by making new links between experimental aquatic biologists and state-of-the-art modellers. The Topic covered both marine and freshwater systems. This paper summarises projects on aspects of the responses of individual organisms to the effects of environmental variability, on the assembly, permanence and resilience of communities, and on aspects of spatial models. The authors conclude that the NERC Special Topic has been highly successful in promoting the development and application of models, most particularly through the interplay between experimental ecologists and formal modellers.

PICES Press, Vol. 15, No. 1, January 2007

PICES science – 2006 (pdf, 0.1 Mb) 2006 Wooster Award (pdf, 0.1 Mb) Thank you note from the Past-Chairman of PICES (pdf, 0.1 Mb) A comparison of regional mechanisms for fish production: Ecosystem perspectives (pdf, 0.3 Mb) 2006 CREAMS/PICES international workshop and summer school (pdf, 0.2 Mb) PICES Calendar (pdf, 0.2 Mb) 2006 Harmful Algal Bloom Section annual workshop (pdf, 0.1 Mb) 2006 PICES Workshop on “Modeling iron biogeochemistry and ocean ecosystems” (pdf, 0.1 Mb) Strolling through the NEMURO ecosystem model (pdf, 0.1 Mb) Climate and marine birds and mammals in the North Pacific (pdf, 0.2 Mb) Photo highlights of the PICES Fifteenth Annual Meeting (pdf, 3.5 Mb) Recent trends in waters of the subarctic NE Pacific: Cooler and fresher in summer of 2006 (pdf, 0.2 Mb) The state of the western North Pacific in the first half of 2006 (pdf, 0.3 Mb) Latest and upcoming PICES publications (pdf, 0.3 Mb) A seven-year effort of the PICES CCCC MODEL Task Team culminates in a dedicated issue of Ecological Modelling (pdf, 0.1 Mb) Japan joins PICES Marine Metadata Federation (pdf, 0.3 Mb) Argo: A 2006 status report (pdf, 0.3 Mb) New Chairmen in PICES (pdf, 0.2 Mb) PICES Interns (pdf, 0.2 Mb)

The Empirical Modeling of an Ecosystem

The authors have endeavored to create a verified a-posteriori model of a planktonic ecosystem. Verification of an empirically derived set of first-order, quadratic differential equations proved elusive due to the sensitivity of the model system to changes in initial conditions. Efforts to verify a similarly derived set of linear differential equations were more encouraging, yielding reasonable behavior for half of the ten ecosystem compartments modeled. The well-behaved species models gave indications as to the rate-controlling processes in the ecosystem.

SUNLIGHT: a computer program for calculation of daily solar radiation

This paper presents an algorithm and software (available from ICLARM) for estimating the possible amount of sunlight that may fall on any location of the earth, any day of the year, as might be required for ecological modelling.

PICES-GLOBEC International Program on Climate Change and Carrying Capacity: Report of the 1999 MONITOR and REX Workshops, and the 2000 MODEL Workshop on Lower Trophic Level Modelling

Table of Contents [pdf, 0.11 Mb] Executive Summary [pdf, 0.07 Mb] MODEL Task Team Workshop Report Final Report of the International Workshop to Develop a Prototype Lower Trophic Level Ecosystem Model for Comparison of Different Marine Ecosystems in the North Pacific [pdf, 11.64 Mb] Report of the 1999 MONITOR Task Team Workshop [pdf, 0.32 Mb] Report of the 1999 REX Task Team Workshop Herring and Euphausiid population dynamics Douglas E. Hay and Bruce McCarter Spatial, temporal and life-stage variation in herring diets in British Columbia [pdf, 0.10 Mb] Augustus J. Paul and J. M. Paul Over winter changes in herring from Prince William Sound, Alaska [pdf, 0.08 Mb] N. G. Chupisheva Qualitative texture characteristic of herring (Clupea pallasi pallasi) pre-larvae developed from the natural and artificial spawning-grounds in Severnaya Bay (Peter the Great Bay) [pdf, 0.07 Mb] Gordon A. McFarlane, Richard J. Beamish and Jake SchweigertPacific herring: Common factors have opposite impacts in adjacent ecosystems [pdf, 0.15 Mb] Tokimasa Kobayashi, Keizou Yabuki, Masayoshi Sasaki and Jun-Ichi Kodama Long-term fluctuation of the catch of Pacific herring in Northern Japan [pdf, 0.39 Mb] Jacqueline M. O’Connell Holocene fish remains from Saanich Inlet, British Columbia, Canada [pdf, 0.40 Mb] Elsa R. Ivshina and Irina Y. Bragina On relationship between crustacean zooplankton (Euphausiidae and Copepods) and Sakhalin-Hokkaido herring (Tatar Strait, Sea of Japan) [pdf, 0.14 Mb] Stein Kaartvbeedt Fish predation on krill and krill antipredator behaviour [pdf, 0.08 Mb] Nikolai I. Naumenko Euphausiids and western Bering Sea herring feeding [pdf, 0.07 Mb] David M. Checkley, Jr. Interactions Between Fish and Euphausiids and Potential Relations to Climate and Recruitment [pdf, 0.08 Mb] Vladimir I. Radchenko and Elena P. Dulepova Shall we expect the Korf-Karaginsky herring migrations into the offshore western Bering Sea? [pdf, 0.75 Mb] Young Shil Kang Euphausiids in the Korean waters and its relationship with major fish resources [pdf, 0.29 Mb] William T. Peterson, Leah Feinberg and Julie Keister Ecological Zonation of euphausiids off central Oregon [pdf, 0.11 Mb] Scott M. Rumsey Environmentally forced variability in larval development and stage-structure: Implications for the recruitment of Euphausia pacifica (Hansen) in the Southern California Bight [pdf, 3.26 Mb] Scott M. Rumsey Inverse modelling of developmental parameters in Euphausia pacifica: The relative importance of spawning history and environmental forcing to larval stage-frequency distributions [pdf, 98.79 Mb] Michio J. Kishi, Hitoshi Motono & Kohji Asahi An ecosystem model with zooplankton vertical migration focused on Oyashio region [pdf, 33.32 Mb] PICES-GLOBEC Implementation Panel on Climate Change and Carrying Capacity Program Executive Committee and Task Team List [pdf, 0.05 Mb] (Document pdf contains 142 pages)

Models in the implementation of the Water Framework Directive - benchmarking as part of the modelling proccess

The Water Framework Directive (WFD; European Commission 2000) is a framework for European environmental legislation that aims at improving water quality by using an integrated approach to implement the necessary societal and technical measures. Assessments to guide, support, monitor and evaluate policies, such as the WFD, require scientific approaches which integrate biophysical and human aspects of ecological systems and their interactions, as outlined by the International Council for Science (2002). These assessments need to be based on sound scientific principles and address the environmental problems in a holistic way. End-users need help to select the most appropriate methods and models. Advice on the selection and use of a wide range of water quality models has been developed within the project Benchmark Models for the Water Framework Directive (BMW). In this article, the authors summarise the role of benchmarking in the modelling process and explain how such an archive of validated models can be used to support the implementation of the WFD.