Evaluating methods for estimating rare events with zero-heavy data: a simulation model estimating sea turtle bycatch in the pelagic longline fishery

Estimating rare events from zero-heavy data (data with many zero values) is a common challenge in fisheries science and ecology. For example, loggerhead sea turtles (Caretta caretta) and leatherback sea turtles (Dermochelys coriacea) account for less than 1% of total catch in the U.S. Atlantic pelagic longline fishery. Nevertheless, the Southeast Fisheries Science Center (SEFSC) of the National Marine Fisheries Service (NMFS) is charged with assessing the effect of this fishery on these federally protected species. Annual estimates of loggerhead and leatherback bycatch in a fishery can affect fishery management and species conservation decisions. However, current estimates have wide confidence intervals, and their accuracy is unknown. We evaluate 3 estimation methods, each at 2 spatiotemporal scales, in simulations of 5 spatial scenarios representing incidental capture of sea turtles by the U.S. Atlantic pelagic longline fishery. The delta-log normal method of estimating bycatch for calendar quarter and fishing area strata was the least biased estimation method in the spatial scenarios believed to be most realistic. This result supports the current estimation procedure used by the SEFSC.

Benthic invertebrates that form habitat on deep banks off southern California, with special reference to deep sea coral

There is increasing interest in the potential impacts that fishing activities have on megafaunal benthic invertebrates occurring in continental shelf and slope ecosystems. We examined how the structure, size, and high-density aggregations of invertebrates provided structural relief for fishes in continental shelf and slope ecosystems off southern California. We made 112 dives in a submersible at 32−320 m water depth, surveying a variety of habitats from high-relief rock to flat sand and mud. Using quantitative video transect methods, we made 12,360 observations of 15 structure-form-ing invertebrate taxa and 521,898 individuals. We estimated size and incidence of epizoic animals on 9105 sponges, black corals, and gorgonians. Size variation among structure-form-ing invertebrates was significant and 90% of the individuals were <0.5 m high. Less than 1% of the observations of organisms actually sheltering in or located on invertebrates involved fishes. From the analysis of spatial associations between fishes and large invertebrates, six of 108 fish species were found more often adjacent to invertebrate colonies than the number of fish predicted by the fish-density data from transects. This finding indicates that there may be spatial associations that do not necessarily include physical contact with the sponges and corals. However, the median distances between these six fish species and the invertebrates were not particularly small (1.0−5.5 m). Thus, it is likely that these fishes and invertebrates are present together in the same habitats but that there is not necessarily a functional relationship between these groups of organisms. Regardless of their associations with fishes, these invertebrates provide structure and diversity for continental shelf ecosystems off southern California and certainly deserve the attention of scientists undertaking future conservation efforts.

Biodiversity as an index of regime shift in the eastern Bering Sea

Data collected from an annual groundf ish survey of the eastern Bering Sea shelf from 1975 to 2002 were used to estimate biomass and biodiversity indexes for two fish guilds: f latfish and roundfish. Biomass estimates indicated that several species of f latfish (particularly rock sole, arrowtooth flounder, and f lathead sole), several large sculpins (Myoxocephalus spp.), bigmouth (Hemitripterus bolini), and skates (Bathyraja spp.) had increased. Declining species included several f latfish species and many smaller roundfish species of sculpins, eelpouts (Lycodes spp.), and sablefish (Anoplopoma fimbria). Biodiversity indexes were calculated by using biomass estimates for both guilds from 1975 through 2002 within three physical domains on the eastern Bering Sea shelf. Biodiversity trends were found to be generally declining within the roundfish guild and generally increasing within the f latfish guild and varied between inner, middle, and outer shelf domains. The trends in biodiversity indexes from this study correlated strongly with the regime shift reported for the late 1970s and 1980s.

Triglops dorothy, a new species of sculpin (Teleostei: Scorpaeniformes: Cottidae) from the southern Sea of Okhotsk

A new species of the cottid genus Triglops Reinhardt is described on the basis of 21 specimens collected in Aniva Bay, southern Sakhalin Island, Russia, and off Kitami, on the northern coast of Hokkaido, Japan, at depths of 73–117 m. Of the ten species of Triglops now recognized, the new species, Triglops dorothy, is most similar to T. pingeli Reinhardt, well known from the North Atlantic and North Pacific oceans and throughout coastal waters of the Arctic. The new species differs from T. pingeli in a combination of morphometric and meristic characters that includes most importantly the number of dorsolateral scales; the number of oblique, scaled dermal folds below the lateral line; and the number of gill rakers.

A study of tagging methods for the sea cucumber Cucumaria frondosa in the waters off Maine

The sea cucumber fishery in waters off Maine is developing and has recently experienced great increases in landings, corresponding to expanding export markets. Between 1994 and 1996, reported landings ranged from one to three million pounds (Fig. 1). In 1999, reported landings were over eight million pounds and rose to over nine million in 2000 (Feindel1). Like other developing fisheries, we have little information about the biology and ecology of the sea cucumber off Maine, limited data on the fishery, and little knowledge about the key life history processes that characterize its population dynamics. Therefore, we have a limited understanding of the current status of the resource and the impacts the fishery may have on the stock.

Incidental catch and estimated discards of pelagic sharks from the swordfish and tuna fisheries in the Mediterranean Sea

Large pelagic sharks are caught incidentally in the swordfish and tuna fisheries of the Mediterranean Sea. In our study, twelve shark species were documented as bycatch over three years from 1998 to 2000. Blue shark (Prionace glauca) was the predominant species in all gears and areas examined. Shortfin mako (Isurus oxyrinchus), common thresher shark (Alopias vulpinus), and tope shark (Galeorhinus galeus) were the next most abundant shark species—found in more than half of the areas sampled. Catch composition varied both in the areas and gears investigated. Sharks represented 34.3% in weight of total catches sampled in the Alboran Sea and 0.9% in the Straits of Sicily. Higher shark catches were observed in the swordfish longline fishery, where a nominal CPUE value reached 3.8 sharks/1000 hooks in the Alboran Sea. Size distribution by fishing gear varied significantly. Albacore longline catches consisted mainly of juveniles, whereas subadult and adult specimens were more frequent in the swordfish longline and driftnet fishery. The percentage of sharks brought onboard alive was exceptionally high; only 5.1% of the specimens died. Few discards (seven blue shark) were recorded in the Greek longline fleet during onboard sampling in the Aegean Se

Meso-scale transboundary units for the management of coral reefs in the South China Sea area

Local communities and local government units are recognized as the primary stakeholders and participants in the management of coral reef resources and the primary beneficiaries of small-scale fishing activities in the nearshore areas of the coastal zone. The issues relating to the management of the coastal zone are multi-faceted and some issues are largely intertwined with national policy and development goals. Thus, national governments have jurisdiction over these nearshore coastal resources to harmonize policies, monitor resource use and provide incentives for sustainable use. However, the natural boundaries of these reef resources, the processes that support reef ecosystems, and the local or national affiliation of the people who benefit from them may transcend the boundaries of the local and national management units. Therefore, efforts to arrest the decline in fish catch and loss of biodiversity for reefs require management interventions and assessment activities to be carried out at varying scales. In Southeast Asia, some aspects of reef and reef resources management — particularly in deciding the allocation of catch among competing fisheries, development of sustainable harvest strategies, use of broodstock for restocking or stock enhancement programs, protection of nursery and spawning areas, designation of systems of marine protected areas, and the identification of representative, adequate and comprehensive areas for biodiversity conservation in the region — may require the definition of larger management units. At the regional level, multi-country initiatives will need to define units for the transboundary management of resources. The use of large marine ecosystems (LMEs) to identify and manage fisheries resources may be a starting point; however, given the relatively sedentary nature of coral reef-dwelling and reef-associated organisms compared with other pelagic and demersal species, meso-scale transboundary units within the LMEs have to be defined. This paper provides suggestions for transboundary management units for coral reef and reef-associated resources in Southeast Asia based on information from genetic structures of model organisms in the region. In addition, specific reef areas are identified, which may be important beyond their national boundaries, as potential sources of recruits.

Length-weight relationship of fishes from Yemen waters (Gulf of Aden and Red Sea)

The data for this study were gathered between 1993 and 1996 on board commercial trawlers from Somalia, China and Yemen and also from the research vessel Ibn Magid belonging to the Marine Science and Resources Research Centre, Aden, Republic of Yemen. Fish were identified using the FAO species identification literature. All fish were measured to the nearest mm (total length) and weighed to the nearest g. Sex was determined by dissection after the length and weight had been measured. The length-weight relationships were calculated using least-squares regression on log-transformed data and the parameters of the relationship of the form of W=aL super(b) are summarized. Maximum and minimum size of fish sampled are also given. Common names and recent changes in nomenclature were taken from ICLARM's FishBase.

Occurrence and distribution of fish species off Yemen (Gulf of Aden and Arabian Sea)

The species list is drawn from an analysis of catches taken by Sumalian and Russian trawlers in the Gulf of Aden and the Arabian Sea between 1985 and 1990. The southern coastline of the Republic of Yemen has been divided into 7 areas, including waters around Socotra Island. The average depth of each trawl was recorded in 50 m increments. Non-appearance of the species in the area does not mean that the species do not occur in that area or depth, merely that it was not recorded in any of the samples analyzed. Specimens that could not be identified to species level have been excluded. A total of 195 species from 75 families was recorded and is summarized. Most of the identification of species was from FAO species identification literature. Confirmation of some species and usage of common names is from ICLARM's FishBase and Al Sedfy, et al. (1982).

Culture of tropical sea cucumbers for stock restoration and enhancement

Severe overfishing of sea cucumbers has occurred in most countries of the tropical Indo-Pacific. The release of juveniles is being examined at the ICLARM Coastal Aquaculture Centre in the Solomon islands as a means of restoring and enhancing tropical sea cucumber stocks. Sandfish (Holothuria scabra) are the tropical species that show the best potential for stock enhancement. Sandfish are of high value, widely distributed and relatively easy to culture in simple systemss at a low cost. This paper summarizes information about the culture of H. scabra and compares it to that of the temperate species Stichopus japonicus.

The South China Sea: analyzing fisheries catch data in an ecosystem context

The South China Sea is an important fishing area with an annual harvest of some 5 million tonnes, or 10% of the catches jointly taken by the developing nations of the world. Details are given of a model of the area describing fisheries catches and biological interactions. The area, viewed as a large marine ecosystem, was divided into 10 subsystems; each subsystem was then linked with adjacent subsystems by predatory links, and detritus flows. An analysis was then made of catch statistics for each of the subsystems. It is believed that if all systems could be harvested at around the highest efficiency, an additional 5-6 million tonnes could be taken annually from the South China Sea; however, more refined analyses are needed to further investigate these possibilities. If linked with careful studies of the economic and human aspects of fishing, such analyses will provide guidelines for integrated fisheries management advice.

Fisheries of the Farasan Islands (Red Sea)

The fisheries of the Farasan Islands (Saudi Arabia, Red Sea) are described. The fishery resources are exploited by artisanal, investor and industrial sectors. The artisanal fishery consists mostly of line fishing around coral reefs and about half the fishing effort occurs within the proposed marine protected area (MPA). Activities by investor and industrial fisheries sector include line fishing, gill netting, fish trapping and demersal fish trawling. The relevant resource management issues that need to be addressed as part of a planning study for the establishment of a MPA are also presented. The major issues are: (1) the decline in the catch of the artisanal fishery; (2) by catch and habitat degradation; (3) sustainability in the collection of giant clams and pearl shells; and (4) the lack of information such as the importance of MPA to fisheries, stock assessment and catch and effort data. A significant role in the future management of the fisheries has been identified for the traditional representatives of the artisanal sector.

Relationship between sea surface temperatures and dolphin-associated fishing activities by the Mexican tuna fleet

Data from the Mexican purse seiner fleet operating in the eastern Tropical Pacific, for the year 1985-1990, are used to show that the fraction of surface schools of yellowfin tuna Thunnus albacares associated with dolphins (Stenella attenuata and others) increases with sea surface temperature. Possible reasons for this correlation are briefly discussed.

A program for the identification of the pelagic eggs of Black Sea fishes

A computer program was developed for the identification of the teleost fish eggs that may be found in the pelagic zone of the Black Sea. The program identifies eggs of 70 species, using up to 28 descriptive characters, and may be adapted for use outside of the Black Sea.

Community-based marine protected areas in the Bohol (Mindanao) Sea, Philippines

This paper discusses the status, direction and management issues in the marine protected areas (MPAs) of the Bohol (Mindanao) Sea, Philippines. The MPAs in the study area have increased through the years. Many of them were established and managed by the local government units (LGUs) in collaboration with national government agencies (NGAs), academic institutions, people’s and non-governmental organizations (NGOs). Several management issues and problems were cited by the MPA managers such as insuffi cient funds and facilities, lack of support from NGAs/NGOs and lack of education among the people. Nevertheless, lessons for sustainability can be learned from the experience of some wellmanaged MPAs in the Bohol Sea. These include strong support from the political leadership, community participation and networking among the concerned sectors. Although the best practices are being followed in a number of MPAs in the Bohol Sea, success is still fragmented. The MPAs are currently managed independently although there are ongoing initiatives to network their efforts. However, it can be observed that, as a management tool, MPAs are gaining popularity and support, not only among the fisherfolk but also among local communities and LGUs in the Bohol Sea area.