Population structure of chum salmon (Oncorhynchus keta) across the Pacific Rim, determined from microsatellite analysis

The Pacific Rim population structure of chum salmon (Oncorhynchus keta) was examined with a survey of microsatellite variation to describe the distribution of genetic variation and to evaluate whether chum salmon may have originated from two or more glacial refuges following dispersal to newly available habitat after glacial retreat. Variation at 14 microsatellite loci was surveyed for over 53,000 chum salmon sampled from over 380 localities ranging from Korea through Washington State. An index of genetic differentiation, FST, over all populations and loci was 0.033, with individual locus values ranging from 0.009 to 0.104. The most genetically diverse chum salmon were observed from Asia, particularly Japan, whereas chum salmon from the Skeena River and Queen Charlotte Islands in northern British Columbia and those from Washington State displayed the fewest number of alleles compared with chum salmon in other regions. Differentiation in chum salmon allele frequencies among regions and populations within regions was approximately 18 times greater than that of annual variation within populations. A regional structuring of populations was the general pattern observed, with chum salmon spawning in different tributaries within a major river drainage or spawning in smaller rivers in a geographic area generally more similar to each other than to populations in different major river drainages or geographic areas. Population structure of chum salmon on a Pacific Rim basis supports the concept of a minimum of two refuges, northern and southern, during the last glaciation, but four possible refuges fit better the observed distribution of genetic variation. The distribution of microsatellite variation of chum salmon on a Pacific Rim basis likely reflects the origins of salmon radiating from refuges after the last glaciation period.

Abundance and distribution of the eastern North Pacific Steller sea lion (Eumetopias jubatus) population

The eastern Steller sea lion (Eumetopias jubatus) population comprises animals that breed along the west coast of North America between California and southeastern Alaska. There are currently 13 major rookeries (>50 pups): five in southeastern Alaska, three in British Columbia, two in Oregon, and three in California. Overall abundance has increased at an average annual rate of 3.1% since the 1970s. These increases can largely be attributed to population recovery from predator-control kills and commercial harvests, and abundance is now probably as high as it has been in the last century. The number of rookeries has remained fairly constant (n=11 to 13) over the past 80 years, but there has been a northward shift in distribution of both rookeries and numbers of animals. Based on the number of pups counted in a population-wide survey in 2002, total pup production was estimated to be about 11,000 (82% in southeastern Alaska and British Columbia), representing a total population size as approximately 46,000−58,000 animal

Reinventing fisheries management

This article presents the events and outcome of an international symposium on fisheries management titled, "Reinventing Fisheries Management", held at the Fisheries Centre of the University of British Columbia, Vancouver, Canada, 21-23 February 1996. The title itself suggests that the topics would reach beyond present day paradigm as indeed they did.

Northerly Distribution of White Sharks, Carcharodon carcharias, in the Eastern Pacific and Relation to ENSO Events

Twenty-nine verified records of white sharks, Carcharodon carcharias, from British Columbia and Alaska waters (1961–2004) are presented. Record locations ranged from lat. 48°48ʹN to lat. 60°17ʹN, including the northernmost occurrence of a white shark and the first report of this species from the central Bering Sea. White sharks recorded from the study area were generally large, with 95% falling between 3.8 and 5.4 m in length. Mature white sharks of both sexes occur in British Columbia and Alaska waters, although they do not necessarily reproduce there. White sharks actively feed in the study area; their diet is similar to that reported for this species from Washington and northern California waters. Sea surface temperature (SST) concurrent with white shark records from the study area ranged from 16°C to between 6.4°C and 5.0°C, extending the lower extreme of the range of SST from which this species has been previously reported. White shark strandings are rarely reported, yet 16 (55%) of the records in this study are of beached animals; strandings generally occurred later in the year and at lower latitudes than nonstrandings. No significant correlation was found between white shark records in the study area and El Niño events and no records occurred during La Niña events. The data presented here indicate that white sharks are more abundant in the cold waters of British Columbia and Alaska than previous records suggest.

William Francis Thompson (1888–1965): a Preeminent Fishery Biologist of the Early and Mid Twentieth Century

William Francis Thompson (1888–1965) was a preeminent fishery scientist of the early to mid twentieth century. Educated at Stanford University in California (B.A. 1911, Ph.D. 1930), Thompson conducted pioneering research on the Pacific halibut, Hippoglossus stenolepis, from 1914 to 1917 for the British Columbia Provincial Fisheries Department. He then directed marine fisheries research for the State of California from 1917 to 1924, was Director of Investigations for the International Fisheries Commission from 1924 to 1939, and Director of the International Pacific Salmon Fisheries Commission from 1937 to 1942. He was also Director of the School of Fisheries, University of Washing-ton, Seattle, from 1930 to 1947. Thompson was the founding director in 1947 of the Fisheries Research Institute at the University of Washington and served in that capacity until his retirement in 1958. He was a dominant figure in fisheries research of the Pacific Northwest and influenced a succession of fishery scientists with his yield-based analysis of fishery stocks, as opposed to studying the fishes’environment. Will Thompson was also a major figure in education, and many of his former students attained leadership positions in fisheries research and administration.

William Francis Thompson (1888–1965) and His Pioneering Studies of the Pacific Halibut, Hippoglossus stenolepis

William Francis Thompson (1888–1965), as a temporary employee of the British Columbia Provincial Fisheries Department, was assigned in 1914 to under-take full-time studies of the Pacific halibut, Hippoglossus stenolepis. The fishery was showing signs of depletion, so Thompson undertook the inquiry into this resource, the first intensive study on the Pacific halibut. Three years later, Thompson, working alone, had provided a basic foundation of knowledge for the subsequent management of this resource. He published seven land-mark papers on this species, and this work marked the first phase of a career in fisheries science that was to last nearly 50 years.

William Francis Thompson (1888–1965) and His Pioneering Studies of the Pacific Halibut, Hippoglossus stenolepis

William Francis Thompson (1888–1965), as a temporary employee of the British Columbia Provincial Fisheries Department, was assigned in 1914 to under-take full-time studies of the Pacific halibut, Hippoglossus stenolepis. The fishery was showing signs of depletion, so Thompson undertook the inquiry into this resource, the first intensive study on the Pacific halibut. Three years later, Thompson, working alone, had provided a basic foundation of knowledge for the subsequent management of this resource. He published seven land-mark papers on this species, and this work marked the first phase of a career in fisheries science that was to last nearly 50 years.

The California Red Sea Urchin, Strongylocentrotus franciscanus, Fishery: Catch, Effort, and Management Trends

California's red sea urchin, Strongylocentrotus franciscanus, catch peaked at 23,577 metric tons (t) in 1988. Since then, catches and CPUE have trended downward at different rates in northern and southern California, with 10,086 t landed statewide in 1995. West coast sea urchin catches and CPUE from British Columbia, Can., to Baja California, Mex., have generally declined during this period which followed a decade of rapid fishery expansion. This expansion was in response to increasing demand from Japan fueled by rising prices based largely on a more favorable export currency exchange rate. West coast stock assessment methods have been based on integrating a combination of fisheries dependent data and population surveys into models at various levels of complexity. California management policy has centered on technical measures such as size limits and seasonal closures and has been largely ineffective in stabilizing declining catches.

Menhaden: The Resource, The Industry, and a Management History

PREFACE: Four species of menhaden, Brevoortia spp., are found along the Atlantic and Gulf of Mexico coasts of the United States. The Atlantic menhaden, B. tyrannus, is found from Nova Scotia, Can., to West Palm Beach, Fla.; the yellowfin menhaden, B. smithi, is found from Cape Lookout, N. C., to the Mississippi River Delta, La.;the Gulf menhaden, B. patronus, is found from Cape Sable, Fla., to Veracruz, Mex.; and the finescale menhaden, B. gunteri, is found from the Mississippi River Delta, La., to Campeche, Mex. Menhaden are euryhaline species that inhabit coastal and inland tidal waters. Spawning occurs principally at sea (in northern areas some spawning occurs in bays and sounds). Eggs hatch at sea and the larvae are moved to estuaries by ocean currents where they metamorphose and develop as juveniles.

PICES Press, Vol. 18, No. 1, Winter 2010

•Major Outcomes from the 2009 PICES Annual Meeting: A Note from the Chairman (pp. 1-3, 8) •PICES Science – 2009 (pp. 4-8) •2009 PICES Awards (pp. 9-10) •New Chairmen in PICES (pp. 11-15) •PICES Interns (p. 15) •The State of the Western North Pacific in the First Half of 2009 (pp. 16-17, 27) •The State of the Northeast Pacific in 2009 (pp. 18-19) •The Bering Sea: Current Status and Recent Events (pp. 20-21) •2009 PICES Summer School on “Satellite Oceanography for the Earth Environment” (pp. 22-25) •2009 International Conference on “Marine Bioinvasions” (pp. 26-27) •A New PICES Working Group Holds Workshop and Meeting in Jeju Island (pp. 28-29) •The Second Marine Ecosystem Model Inter-comparison Workshop (pp. 30-32) •ICES/PICES/UNCOVER Symposium on “Rebuilding Depleted Fish Stocks – Biology, Ecology, Social Science and Management Strategies” (pp. 33-35) •2009 North Pacific Synthesis Workshop (pp. 36-37) •2009 PICES Rapid Assessment Survey (pp. 38-40)

A mechanism for the link between solar-irradiance variations and regional precipitation

Although the mechanisms of climatic fluctuations are not completely understood, changes in global solar irradiance show a link with regional precipitation. A proposed mechanism for this linkage begins with absorption of varying amounts of solar energy by tropical oceans, which may aid in development of ocean temperature anomalies. These anomalies are then transported by major ocean currents to locations where the stored energy is released into the atmosphere, altering pressure and moisture patterns that can ultimately affect regional precipitation. Correlation coefficients between annual averages of monthly differences in empirically modeled solar-irradiance variations and annual state-divisional precipitation values in the United States for 1950 to 1988 were computed with lag times of 0 to 7 years. The highest correlations (R=0.65) occur in the Pacific Northwest with a lag time of 4 years, which is about equal to the travel time of water within the Pacific Gyre from the western tropical Pacific Ocean to the Gulf of Alaska. With positive correlations, droughts coincide with periods of negative irradiance differences (dry, high-pressure development), and wet periods coincide with periods of positive differences (moist, low-pressure development).

A biogeographic assessment of the Samoan Archipelago

This report examines the marine biogeography of the Samoan Archipelago (~14º S latitude along the international date-line) with a focus on regional ocean climate, connectivity among islands due to larval transport, distributions of reef fish and coral communities, and the extent of existing marine protected areas. Management decisions and prior assessments in the archipelago have typically been split along the international political boundary between the islands of Samoa and those of American Samoa despite their close proximity and shared resources. A key goal in this assessment was to compile data from both jurisdictions and to conduct the characterization across the entire archipelago. The report builds upon earlier assessments by re-analyzing and interpreting many pre-existing datasets, adding more recent biogeographic data sources, and by combining earlier findings into a multidisciplinary summary of marine biogeography. The assessment is divided into 5 chapters and supporting appendices. Each chapter was written and reviewed in collaboration with subject matter specialists and local experts. In Chapter 1, a short introduction to the overall scope and approach of the report is provided. In Chapter 2, regional ocean climate is characterized using remote sensing datasets and discussed in the context of local observations. In Chapter 3, regional ocean currents and transport of coral and fish larvae are investigated among the islands of the archipelago and surrounding island nations. In Chapter 4, distinct reef fish and coral communities across the archipelago are quantified on the basis of overall biodiversity, abundance, and community structure. In Chapter 5, the existing network of MPAs in American Samoa is evaluated based on the habitats, reef fish, and coral communities that are encompassed. Appendices provide analytical details omitted from some chapters for brevity as well as supplemental datasets needed as inputs for the main chapters in the assessment. Appendices include an inventory of regional seamounts, a description of shore to shelf edge benthic maps produced for Tutuila, analytical details of reef fish and coral datasets, and supplemental information on the many marine protected areas in American Samoa.

Evaluation and application of microsatellites for population identification of Fraser River chinook salmon (Oncorhynchus tshawytscha)

Variation at 13 microsatellite loci was previously surveyed in approximately 7400 chinook salmon (Oncorhynchus tshawytscha) sampled from 50 localities in the Fraser River drainage in southern British Columbia. Evaluation of the utility of the microsatellite variation for population-specific stock identification applications indicated that the accuracy of the stock composition estimates generally improved with an increasing number of loci used in the estimation procedure, but an increase in accuracy was generally marginal after eight loci were used. With 10–14 populations in a simulated fishery sample, the mean error in population-specific estimated stock composition with a 50-popula-tion baseline was <1.4%. Identification of individuals to specific populations was highest for lower Fraser River and lower and North Thompson River populations; an average of 70% of the individual fish were correctly assigned to specific populations. The average error of the estimated percentage for the seven populations present in a coded-wire tag sample was 2% per population. Estimation of stock composition in the lower river commercial net fishery prior to June is of key local fishery management interest. Chinook salmon from the Chilcotin River and Nicola River drainages were important contributors to the early commercial fishery in the lower river because they comprised approximately 50% of the samples from the net fishery prior to mid April.

Offshore coho salmon populations near the Pacific Northwest and large-scale atmospheric events

EXTRACT (SEE PDF FOR FULL ABSTRACT): Catch of coho salmon off the coast of Washington and Oregon since 1925 appears to be related to large-scale events in the atmosphere, which in turn affect ocean currents and coastal upwelling intensities in the northeastern Pacific. At least two time scales of variations can be identified. The first is that of the El Nino/Southern Oscillation phenomenon giving rise to an irregular cycle of between 3 to 7 years. ... The second time scale of variation seems to have a periodicity of about 20 years, although this is based on a limited dataset. ... This paper endeavors to describe how, if real, these atmospheric/oceanic effects are integrated and might affect the salmon catch. The possibility must also be considered that the atmospheric events are symbiotically related to the oceanic events and, further, that both may be enmeshed in even longer-term variability of climate.