A baseline assessment of the ecological resources of Jobos Bay, Puerto Rico

This baseline assessment of Jobos Bay and surrounding marine ecosystems consists of a two part series. The first report (Zitello et al., 2008) described the characteristics of the Bay and its watershed, including modeling work related to nutrients and sediment fluxes, based on existing data. The second portion of this assessment, presented in this document, presents the results of new field studies conducted to fill data gaps identified in previous studies, to provide a more complete characterization of Jobos Bay and the surrounding coral reef ecosystems. Specifically, the objective was to establish baseline values for the distribution of habitats, nutrients, contaminants, fi sh, and benthic communities. This baseline assessment is the first step in evaluating the effectiveness in changes in best management practices in the watershed. This baseline assessment is part of the Conservation Effects Assessment Project (CEAP), which is a multi-agency effort to quantify the environmental benefits of conservation practices used by agricultural producers participating in selected U.S. Department of Agriculture (USDA) conservation programs. Partners in the CEAP Jobos Bay Special Emphasis Watershed (SEW) included USDA’s Agricultural Research Service (ARS) and the Natural Resources Conservation Service (NRCS), National Oceanic and Atmospheric Administration (NOAA) and the Government of Puerto Rico. The project originated from an on-going collaboration between USDA and NOAA on the U.S. Coral Reef Task Force. The Jobos Bay watershed was chosen because the predominant land use is agriculture, including agricultural lands adjacent to the Jobos Bay National Estuarine Research Reserve (JBNERR or Reserve), one of NOAA’s 26 National Estuarine Research Reserves (NERR). This report is organized into six chapters that represent a suite of interrelated studies. Chapter 1 provides a short introduction to Jobos Bay, including the land use and hydrology of the watershed. Chapter 2 is focused on benthic mapping and provides the methods and results of newly created benthic maps for Jobos Bay and the surrounding coral reef ecosystem. Chapter 3 presents the results of new surveys of fish, marine debris, and reef communities of the system. Chapter 4 is focused on the distribution of chemical contaminants in sediments within the Bay and corals outside of the Bay. Chapter 5 focuses on quantifying nutrient and pesticide concentrations in the surface waters at the Reserve’s System-Wide Monitoring Program (SWMP) sites. Chapter 6 is a brief summary discussion that highlights key findings of the entire suite of studies.

An ecological characterization of the marine resources of Vieques, Puerto Rico Part II: Field studies of habitats, nutrients, contaminants, fish, and benthic communities

Since the 1940s, portions of the Island of Vieques, Puerto Rico have been used by the United States Navy (USN) as an ammunition support detachment and bombing and maneuver training range. In April 2001, the USN began phasing out military activities on the island and transferring military property to the U.S. Department of the Interior, the Municipality of Vieques, and the Puerto Rico Conservation Trust. A small number of studies have been commissioned by the USN in the past few decades to assess selected components of the coral reef ecosystem surrounding the island; however, these studies were generally of limited geographic scope and short duration. The National Oceanic and Atmospheric Administration’s (NOAA) National Centers for Coastal Ocean Science (NCCOS), in consultation with NOAA’s Office of Response and Restoration (OR&R) and other local and regional experts, conducted a more comprehensive characterization of coral reef ecosystems, contaminants, and nutrient distribution patterns around Vieques. This work was conducted using many of the same protocols as ongoing monitoring work underway elsewhere in the U.S. Caribbean and has enabled comparisons among coral reef ecosystems in Vieques and other locations in the region. This characterization of Vieques’ marine ecosystems consists of a two part series. First, available information on reefs, fish, birds, seagrasses, turtles, mangroves, climate, geology, currents, and human uses from previous studies was gathered and integrated into a single document comprising Part I of this two part series (Bauer et al. 2008). For Part II of the series, presented in this document, new field studies were conducted to fill data gaps identified in previous studies, to provide an island-wide characterization, and to establish baseline values for the distribution of habitats, nutrients, contaminants, fish, and benthic communities. An important objective underlying this suite of studies was to quantify any differences in the marine areas adjacent to the former and current land-use zoning around Vieques. Specifically of interest was the possibility that either Naval (e.g., practice bombing, munitions storage) or civilian activities (e.g., sewage pollutants, overfishing) could have a negative impact on adjacent marine resources. Measuring conditions at this time and so recently after the land transfer was essential because present conditions are likely to be reflective of past land-use practices. In addition, the assessment will establish benchmark conditions that can be influenced by the potentially dramatic future changes in land-use practices as Vieques considers its development. This report is organized into seven chapters that represent a suite of interrelated studies. Chapter 1 provides a short introduction to the island setting, the former and current land-use zoning, and how the land zoning was used to spatially stratify much of the sampling. Chapter 2 is focused on benthic mapping and provides the methods, accuracy assessment, and results of newly created benthic maps for Vieques. Chapter 3 presents the results of new surveys of fish, marine debris, and reef communities on hardbottom habitats around the island. Chapter 4 presents results of flora and fauna surveys in selected bays and lagoons. Chapter 5 examines the distribution of nutrients in lagoons, inshore, and offshore waters around the island. Chapter 6 is focused on the distribution of chemical contaminants in sediments and corals. Chapter 7 is a brief summary discussion that highlights key findings of the entire suite of studies.

An ecological characterization of the marine resources of Vieques, Puerto Rico. Part I: Historical data synthesis

From the 1940s until 2003, portions of the island of Vieques, a municipality within the Commonwealth of Puerto Rico, were used by the US Navy as a base and training facility, resulting in development and zoning history that differ in comparison to other Caribbean islands. The majority of former Navy lands are now under the jurisdiction of the Department of the Interior’s Fish and Wildlife Service as a National Wildlife Refuge, while a smaller percentage of land was transferred to the Vieques municipality and the Puerto Rico Conservation Trust. An analysis of the distribution and status of the marine resources is timely in light of the recent land transfer, increases in development and tourism, and potential changes in marine zoning around the island. To meet this need, NOAA’s Biogeography Branch, in cooperation with the Office of Response and Restoration and other local and regional partners, conducted Part I of an ecological characterization to integrate historical data and research into a synthesis report. The overall objective of this report is to provide resource managers and residents a comprehensive characterization of the marine resources of Vieques to support research, monitoring, and management. For example, knowledge of the spatial distribution of physical features, habitats, and biological communities is necessary to make an informed decision of the establishment and placement of a marine protected area (MPA). The report is divided into chapters based on the physical environment (e.g., climate, geology, bathymetry), habitat types (e.g., reefs and hardbottom, seagrasses, mangroves) and major faunal groups (e.g. fish, turtles, birds). Each section includes five subsections: an overview, description of the relevant literature, methods of analysis, information on the distribution, status and trends of the particular resource, and a discussion of ecological linkages with other components of the Vieques marine ecosystem and surrounding environment. The physical environment of Vieques is similar to other islands within the Greater Antilles chain, with some distinctions. The warm, tropical climate of Vieques, mediated by the northeasterly trade winds, is characterized by a dry season (December-April) and a rainy season (May-November), the latter of which is characterized by the occasional passage of tropical cyclones. Compared to mainland Puerto Rico, Vieques is characterized by lower elevation, less annual precipitation, and higher average temperatures. The amount of annual precipitation also varies spatially within Vieques, with the western portion of the island receiving higher amounts of rainfall than further east. While the North Equatorial Current dominates the circulation pattern in the Greater Antilles region, small scale current patterns specific to Vieques are not as well characterized. These physical processes are important factors mitigating the distribution and composition of marine benthic habitats around Vieques. In general, the topography of Vieques is characterized by rolling hills. Mt. Pirata, the tallest point at 301 m, is located near the southwest coast. In the absence of island wide sedimentation measurements, information on land cover, slope, precipitation, and soil type were used to estimate relative erosion potential and sediment delivery for each watershed. While slope and precipitation amount are the primary driving factors controlling runoff, land use practices such as urban development, military activity, road construction, and agriculture can increase the delivery of pollution and sediments to coastal waters. Due to the recent land transfer, increased development and tourism is expected, which may result in changes in the input of sediments to the coastal environment.

Fishery dynamics of the California market squid (Loligo opalescens), as measured by satellite remote sensing

Novel data on the spatial and temporal distribution of fishing effort and population abundance are presented for the market squid fishery (Loligo opalescens) in the Southern California Bight, 1992−2000. Fishing effort was measured by the detection of boat lights by the Defense Meteorological Satellite Program (DMSP) Operational Linescan System (OLS). Visual confirmation of fishing vessels by nocturnal aerial surveys indicated that lights detected by satellites are reliable indicators of fishing effort. Overall, fishing activity was concentrated off the following Channel Islands: Santa Rosa, Santa Cruz, Anacapa, and Santa Catalina. Fishing activity occurred at depths of 100 m or less. Landings, effort, and squid abundance (measured as landings per unit of effort, LPUE) markedly declined during the 1997−98 El Niño; landings and LPUE increased afterwards. Within a fishing season, the location of fishing activity shifted from the northern shores of Santa Rosa and Santa Cruz Islands in October, the typical starting date for squid fishing in the Bight, to the southern shores by March, the typical end of the squid season. Light detection by satellites offers a source of fine-scale spatial and temporal data on fishing effort for the market squid fishery off California, and these data can be integrated with environmental data and fishing logbook data in the development of a management plan.

Contribution of zooplankton to the fishery potential of some environments

Difference in zooplankton production in estuarine, coastal and oceanic realms of the Indian Ocean has been correlated to the fishery potential of the concerned area. In the estuarine habitat the estimated rate of secondary production can not sustain a fishery of the present magnitude. Direct correlation between fish landing and zooplankton is observed in the coastal waters. Compared to coastal waters zooplankton standing stock is low in the open ocean and this low production is compensated by a wider area. The estimated fishery potential of the ocean is much more than what is being exploited.

Morphometric study of Megalaspis cordyla (Linnaeus, 1758) along the northwest coast of India

Megalaspis cordyla obtained from the landings in and around Bombay, Maharashtra, India, were analysed for the study of their morphometric and meristic characteristics. The various morphometric and meristic characteristics did not indicate any variation within the population. The data provided are intended to facilitate comparison with similar data for other locations, and thereby, to establish the homogeneity or heterogeneity of the populations in the distributional range of this species.

Fishery potential of the Thana-Bassein creek system

Quantitative variation in fish catch at Thana Creek was found 2-93.5 kg/h (av. 24.8 kg/h). The catch rate at Bassein Creek fluctuated between 1 and 34 kg/h (av. 8.2 kg/h). Seasonal effect on the fishery showed maximum catch for premonsoon and monsoon periods respectively for Thana and Bassein Creeks. The catch composition showed dominance of catfish and sciaenids at Thana Creek while engraulids predominated the collections from Bassein Creek. The overall fishery potential showed that yield from Thana Creek was three times more than the Bassein Creek. The importance of this baseline data for future monitoring and ecological assessment of the creek system is discussed.

Environmental inventory and the distribution of inorganic nutrients in a tropical estuary of the south-west coast of India

Dissolved nutrients (PO sub(4)-P, NO sub(3)-N, NO sub(2)-N and SiO sub(4)-Si) estimated in the surface and bottom waters of five selected stations of the Paravur Lake, Kerala, India, during February 1987 to January 1988 revealed distinct seasonal variations. Rainfall and land drainage play significant roles in the nutrient economy, particularly NO sub(3)-N and SiO sub(4)-Si, of this water body. Abnormally high values of PO sub(4)-P indicated extremely polluted condition at the wetting zone of the lake during the premonsoon season. SiO sub(4)-Si showed significant negative relationship with salinity.

Food and feeding habits of Megalaspis cordyla (Linnaeus, 1758) along the northwest coast of India

Megalaspis cordyla as one of the shoaling commercially important pelagic fish in the Northwest coast of India. The study on food and feeding habits of this fish revealed that it is predominantly a carnivorous species feeding primarily on sergestied shrimps like Acetes indicus and small fishes such as Stolephorus species. In addition it feeds on juveniles of Trichiurus, Apogon, Coilia, Sardinella, Nemipterus, Thryssa, and sciaenids. The food of M. cordyla also comprises the young ones of molluscs, especially Loligo and Sepia and occasionally ostracods. The choice food is Acetes indicus.

A multivariate statistical study with a factor analysis of recent planktonic foraminiferal distribution in the Coromandel Coast of India

A study of planktonic foraminiferal assemblages from 19 stations in the neritic and oceanic regions off the Coromandel Coast, Bay of Bengal has been made using a multivariate statistical method termed as factor analysis. On the basis of abundance, 17 foraminiferal species, species were clustered into 5 groups with row normalisation and varimax rotation for Q-mode factor analysis. The 19 stations were also grouped into 5 groups with only 2 groups statistically significant using column normalisation and varimax rotation for R-mode analysis. This assemblage grouping method is suitable because groups of species/stations can explain the maximum amount of variation in them in relation to prevailing environmental conditions in the area of study.

Length-weight relationship Megalaspis cordyla (Linnaeus, 1758) along north west coast of India

Total length and total weight relationship of Megalaspis cordyla (Linnaeus, 1758) a carangid fish, along north west coast of India has been worked out. The fish is an ideal one, growing by weight a cube of its length, isometrically, retaining its specific body shape throughout its life. The relationship is w = 0.00906279 L super(2.9024152) total weight of fish in g and "L" represents total length in cm.

Rice-fish culture: status and potential for increased production in the southwestern states of India

The scope of increasing production through rice-fish integration, suitable for coastal districts of Kerala, Karnataka, Goa and Maharashtra, is reviewed. The method of adopting the lowlying freshwater rice fields to raise 2 rice crops along with 4-species fish culture, followed by a third non-cereal summer crop in a year, is discussed. A calendar of operation and economics of the system are presented.

Diseases and parasites of penaeid prawns of India: a short review

The diseases caused by bacteria, fungi, protozoa and metazoa as well as by other biotic and abiotic agents reported in the penaeid prawns of India are reviewed.

Humic acids in sediments of North-Central Arabian Sea, west coast of India

Sediment samples (28) collected during the ORV Sagar Kanya cruise-29, were analysed for humic acid (HA) concentration from the North-Central Arabian Sea. Generally oceanic samples had more HA concentration than the continental shelf (< 200 m depth) samples. The photo-acoustic infrared spectra of shelf sediment HA indicated the presence of more C-H saturated aliphatic chains, while oceanic HA had few peaks for the above groups. Both the IR spectra indicated the absence of aromatic C = C, carbonyl, ketonic groups. Clayey-silt sediment generally had higher concentration of HA compared to sandy-silt type of sediment.

Mortality rates of the Poovalan prawn (Metapenaeus dobsoni) along the southwest coast of India with a note on the dynamics of its population

The annual instantaneous total mortality coefficient (Z) for the prawn Metapenaeus dobsoni has been estimated to range from 0.8 to 5.14 by the cumulative catch curve method. Different methods used in the study resulted in wide ranging values of natural mortality (M) (0.6 to 2.303), but the yield per recruit model when superimposed with the absolute yield values revealed the right order to be > 2. The biologically optimum yield of about 18 thousand tons is obtained for an effort of 2,702 trawlers per day for 215 fishing days when the annual exploitation ratio (E) is about 52%.