Associations among chlorophyll concentration and climatic variables for Suisun Bay and the Sacramento-San Joaquin Delta [abstract]

EXTRACT (SEE PDF FOR FULL ABSTRACT): The recent changes in phytoplankton production and community composition within the Suisun Bay and Sacramento-San Joaquin Delta may be related to climate. Chlorophyll a concentration, decreased by 42% (spring-summer) and 29% (fall) between 1972 through 1976 and 1977 through 1981. The decrease in biomass was characterized by a shift in phytoplankton community dominance from Skeletonema spp., Cyclotella spp. and Coscinodiscus spp. to Melosira granulata. The possible influence of climate on phytoplankton abundance was suggested by multivariate statistical analyses that demonstrated an association between changes in phytoplankton community composition and abundance between 1975 and 1982 and the climate related variables wind velocity, precipitation, river flow and water temperature.

Establishing species–habitat associations for 4 eteline snappers with the use of a baited stereo-video camera system

With the use of a baited stereo-video camera system, this study semiquantitatively defined the habitat associations of 4 species of Lutjanidae: Opakapaka (Pristipomoides filamentosus), Kalekale (P. sieboldii), Onaga (Etelis coruscans), and Ehu (E. carbunculus). Fish abundance and length data from 6 locations in the main Hawaiian Islands were evaluated for species-specific and size-specific differences between regions and habitat types. Multibeam bathymetry and backscatter were used to classify habitats into 4 types on the basis of substrate (hard or soft) and slope (high or low). Depth was a major influence on bottomfish distributions. Opakapaka occurred at depths shallower than the depths at which other species were observed, and this species showed an ontogenetic shift to deeper water with increasing size. Opakapaka and Ehu had an overall preference for hard substrate with low slope (hard-low), and Onaga was found over both hard-low and hard-high habitats. No significant habitat preferences were recorded for Kalekale. Opakapaka, Kalekale, and Onaga exhibited size-related shifts with habitat type. A move into hard-high environments with increasing size was evident for Opakapaka and Kalekale. Onaga was seen predominantly in hard-low habitats at smaller sizes and in either hard-low or hard-high at larger sizes. These ontogenetic habitat shifts could be driven by reproductive triggers because they roughly coincided with the length at sexual maturity of each species. However, further studies are required to determine causality. No ontogenetic shifts were seen for Ehu, but only a limited number of juveniles were observed. Regional variations in abundance and length were also found and could be related to fishing pressure or large-scale habitat features.

Estimating overall fish bycatch in U.S. commercial fisheries

Bycatch, or the unintended capture of fish, marine mammals, sea turtles, and seabirds by fishing gear, occurs to some degree in most fisheries. The recently released National Marine Fisheries Service’s (NMFS) U.S. National Bycatch Report provides information on bycatch in U.S. commercial fisheries by fishery and species. The report also provides national statistics in the form of national bycatch ratio and a national bycatch estimate. We describe the methods used to develop these statistics and compare them to similar studies. We conclude that the national bycatch ratio and national bycatch estimates developed by NMFS represent the best available information on bycatch in U.S. fisheries. However, given changes in bycatch management over time, as well as inter-annual variability in bycatch levels and a high percentage of fisheries for which data on bycatch are not currently available, we recommend that NMFS continue to support bycatch data collection and reporting efforts to improve the quality and quantity of bycatch data and estimates available to fisheries managers and scientists over time. This will enable NMFS to meet its requirements for bycatch reporting under the Magnuson-Stevens Act (MSA), as well as requirements for bycatch minimization under the MSA, Marine Mammal Protection Act, and Endangered Species Act.

Biscayne Bay commercial pink shrimp, Farfantepenaeus duorarum, fisheries, 1986-2005

The Biscayne Bay bait (1986–2005) and food (1989–2005) fisheries for pink shrimp were examined using dealer-reported individual vessel-trip landings data, separated by waterbody code to represent only catches from Biscayne Bay. Annual landings varied little during the 1980’s and early 1990’s, and landings of the bait shrimp fishery exceeded those of the food shrimp fishery. The number of trips and landings in both fisheries increased from the late 1990’s through 2002 and food shrimp landings exceeded landings of bait shrimp; landings in both fisheries decreased sharply in 2003. Landings in both fisheries increased in 2004 and 2005, but the increase in food shrimp landings was stronger. Annual catch per trip was much lower in the bait fishery than the food fishery. Each fishery exploited shrimp of a different size. The bait fishery targeted shrimp less than 19 mm carapace length (CL), whereas the food fishery caught shrimp greater than 19 mm CL. We compared monthly bait shrimp catch per unit of effort (CPUE) from the fishery to an estimate of shrimp density from a fishery-independent sampling effort over a 3-yr period and found a strong statistical relationship with the density estimate lagged by 3 mo. The relationship supported the use of bait shrimp fishery CPUE as an index of abundance in upcoming assessments of the effect of a massive water-management-based ecosystem restoration project on pink shrimp in Biscayne Bay. Project implementation will affect freshwater inflows to the bay and salinity patterns. An abundance index with a lengthy pre-implementation history that can be carried into the operational phase of the restoration project will be invaluable in assessing project effects and protecting an important fishery resource of Biscayne Bay. The bait shrimp fishery can provide a continuing index of shrimp abundance from late 1986 forward.

Three decades of U.S. Gulf of Mexico white shrimp, Litopenaeus setiferus, commercial catch statistics

Gulf of Mexico, white shrimp, Litopenaeus setiferus, catch statistics have been collected by NOAA’s National Marine Fisheries Service for over 50 years. Recent occurrences such as natural and manmade disasters have raised awareness for the need to publish these types of data. Here we report shrimp data collected from 1984 to 2011. These 28 years of catch history are the time series used in the most recent Gulf of Mexico white shrimp stock assessment. Fishing effort for this stock has fluctuated over the period reported, ranging from 54,675 to 162,952 days fished. Catch averaged 55.7 million pounds per year, increasing significantly over the times series. In addition, catch rates have been increasing in recent years, with CPUE levels ranging from 315 lb/day fished in 2002, to 1,175 lb/ day fished in 2008. The high CPUE’s we have measured is one indication that the stock was not in decline during this time period. Consequently, we believe the decline in effort levels is due purely to economic factors. Current stock assessments are now using these baseline data to provide managers with further insights into the Gulf L. setiferus stocks.