Production of positive controls for calcivirus-specific PCR using recombinant baculiovirus technology

Recent advances in our knowledge of the genetic structure of human caliciviruses (HuCVs) and small round-structured viruses (SRSVs) have led to the development of polymerase chain reaction (PCR)-based molecular tests specific for these viruses. These methods have been developed to detect a number of human pathogenic viruses in environmental samples including water, sewage and shellfish. HuCVs and SRSVs are not culturable, and no animal model is currently available. Therefore there is no convenient method of preparing viruses for study or for reagent production. One problem facing those attempting to use PCR-based methods for the detection of HuCVs and SRSVs is the lack of a suitable positive control substrate. This is particularly important when screening complex samples in which the levels of inhibitors present may significantly interfere with amplificiation. Regions within the RNA polymerase regions of two genetically distinct human caliciviruses have been amplified and used to produce recombinant baculoviruses which express RNA corresponding to the calicivirus polymerase. This RNA is being investigated as a positive control substrate for PCR testing, using current diagnostic primer sets. Recombinant baculovirus technology will enable efficient and cost-effective production of large quantities of positive control RNA with a specific known genotype. We consider the development of these systems as essential for successful screening and monitoring applications.

Persistence of viable but non-culturable bacteria during the production and distribution of drinking water

The direct measurement of in situ respiring bacteria using 5-cyano-2,3-ditolyl tetrazolium chloride (CTC) shows that, especially for Gram-negative bacteria, large numbers of viable but non-culturable (VBNC) bacteria are present in finished water from a conventional water treatment plant, and the regrowth of bacteria along distribution networks can be seen rapidly by using this very sensitive technique. The level of bacterial inactivation with chlorine is much less important than has been previously supposed (based on experiments with non-injured laboratory strains of bacteria and classical culture techniques). Threshold values of VBNC bacteria leaving water treatment plants or regrowing along distribution systems have to be determined for better control of coliform regrowth and health- risks associated with the consumption of drinking water.

The production of freshwater fish for food

It has been estimated that in England and Wales fresh water covers some 340 square miles of which about one quarter is inhabited mainly by salmon and trout; in Scotland the lakes cover an area of 340 square miles. The principal object of this publication is to make available in handy form some of the methods, especially those involving the use of manures, by which crops of fish from water can be increased. The cultivation of water which this implies may be compared directly to the cultivation of farm land: the conditions for growth are made as favourable as possible, the seed is sown in the form of young fish, and after one or perhaps two growing seasons the crop is harvested. There are however many waters about the country where marketable fish are already available and can be removed without prejudice to, and indeed to the advantage of, sporting fisheries. In such cases it is necessary only to remove the fish and to rely on the natural processes of reproduction of those which are left to repopulate the water. Farming waters in the true sense is the concern of the greater part of this publication; the removal of crops of otherwise unwanted fish is considered in the last two sections on perch trapping and eel fisheries.

Eléments nutritifs et production primaire dans les lagunes du Côte d'Ivoire : cycle annuel

This paper collects most of the information gathered between October 1974 and July 1976 within the framework of a research program concerning the hydrobioclimate of ivorian lagoons and especially the Ebrié lagoon. Monthly surveys concerning the latter were carried out during 1975. The following parameters - and their vertical distribution wherever it had a meaning - were systematically gathered in a system of fifty-five stations: Transparency (Secchi), Temperature, Salinity, Chlorophylla, Dissolved oxygen, phosphate, nitrate, nitrite. These data provide an outline of the annual cycle of nutrients and primary production of the Ivoirian lagoons

La pêche artisanale en lagune Aby-Tendo-Ehy (Côte d'Ivoire): premières estimations de la production

This work is the result of one year of investigations on the artisanal fisheries of the Aby-Tendo-Ehy lagoon. The structure of fish catches varies with the fisheries zones and the fishing gears, but is relatively stable all year along, in the spite of the existence of some species with well worked seasonary cycle. The composition of beach seines catches, which are relatively unselective fishing gears, is: - in the Tendo lagoon (oligohaline) and Ehy lagoon (freshwater): Chrysichthys spp. 35.1%, Tilapia spp. 18.9%, Acentrogobius schlegelii 15.7%, Ethmalosa fimbriata 12% (those are two seasonary species), Tylochromis jentinki 8.8%, Elops lacerta 5.6%, other species 3.9%. - in the south of the Aby lagoon, under tide influence, Ethmalosa fimbriata 79%, Elops lacerta 12%, Chrysichthys spp. 6%, other species 3%. A preliminary estimation of 7900 tons for this lagoon artisanal fisheries total production is made for 1979 (from representative fishing villages) and can be shared as follows: - beach seines: 5300 tons; - purse seines and "syndicat" seines: 2600 tons; individual fishing: not estimated, it mostly concerns fill nets.

Évaluation de la production primaire et de la chlorophylle à partir des données hydrologiques. Application au Golfe de Guinée

Quantitative relationships between nitrate distribution, chlorophyll and primary integrated values have been used to evaluate the phytoplankton abundance in the Gulf of Guinea. Data of Guinee I cruise (May-July 1968) of the R.V. Jean Charcot have been used. They show a large oligotrophic convergence area (< 250 mg C/m2/J). A relationship previously found between the depth of the nitracline (first level where the nitrate appears) and the depth of the thermal maximum gradient is confirmed. From a practical point of view, this relationship is very useful since it allows, when the biological or chemical data are not available, a rough estimation of phytoplankton integrated biomass and production in the water column, from a temperature profile.

Équation de production: adaptation du modèle de Ricker à un stock de poissons exploité par différents engins

The authors have developed the method used by Pianet and Le Hir (Doc.Sci.Cent. ORSTOM Pointe-Noire, 17, 1971) for the study of albacore (Thunnus albacares) in the Pointe-Noire region. The method is based on the fact that the ratio between unit of effort and number of fish for two fishing gears is equal to the ratio of their catchability coefficients.

Production primaire, secondaire et régéneration des sels nutritifs dans l'upwelling de Mauritanie

Primary and secondary productions and nutrient regeneration in the Mauritanian upwelling area were studied by following a drogue for 9 days, from the point of upwelling till the water mass dives under offshore waters. The lag between phytoplanktonic bloom, zooplanktonic peak and bacterial activity is very short and may be explained by a well-settled biological cycle connected with an undercurrent. Organic production was estimated in two ways: (1) from chlorophyll 'a' values, considering a C/Chla ratio of 25 during the 5.5 day phytoplankton growth period, primary production computed by this method reaches 13.5 g C/m2; (2) from 14C values net primary production calculated for the same period reaches 10.5 g C/m2 and total organic production (net production + organic excretion) reaches 19.5 g C/m2. Organic production computed ratios, delta O/ delta C/ delta N/ delta Si/ delta P are equal to 130/43/11/7.4/1. Secondary production and 'grazing' are estimated from mesozooplankton respiration values and have a huge increase during the bloom. Net secondary production is assessed to be 1.0-4.2 g C/m2 for 6 days. Evidence of nutrient regeneration as ammonia, phosphate and silicate is given and regeneration rates are calculated. Zooplankton excretion plays an important part in nitrogen and phosphorus regeneration. Bacterial activity is induced by zooplankton organic excretion, then increased by phytoplankton decomposition at the end of the bloom.

Premiers résultats sur l'excrétion et la production du zooplancton de la Lagune Ebrié (Côte d'Ivoire)

Biomass and metabolic rates (total nitrogen and phosphorus excretion and respiration) were measured at 4 stations, representative of the lagoon environment, during high-water (Oct-Nov), dry (Dec-Jan) and rainy (July) seasons. In low-salinity waters (4o/oo) Acartia clausi is almost the only species, whereas a marine and diversified fauna is brought in from the ocean during the dry season. O/NT and O/PT atomic ratios between respiration (O) and total nitrogen (NT) and phosphorus (PT) excretions are high (15.1 and 111, respectively) and show a marked hydrocarbon feeding of zooplankton. Production was assessed from excretion via the net growth efficiency coefficient, K2 , calculated from N/P ratios for particles (a1), zooplankton excretion (a2) and constitution (a3). Daily productivity indices (i.e. daily production/biomass ratio) are high and equivalent to 1.2-3.8 day turn-over times. These high values may be ascribed to high temperatures (26.5-30 C) and phytoplankton richness (surface chlorophyll 'a' concentrations are always greater than 4 mg/m-3). Finally, the paper deals with trophic relationships between phyto- and zooplankton (ingestion /primary production ratio and transfer coefficient) and the question of relationships between zooplankton and predators.

Estimation de la production zooplanctonique sur le plateau continental ivoirien

An attempt was made to calculate zooplankton production from weights and settled volumes and from the life cycle of some copepods. Biomass data were recorded during several years from 24 monthly cruises and from a coastal station sampled biweekly. Dry weight data were directly measured or were calculated from the settled volumes using a linear regression. They range, on an average, from 0.965 to 5.56 g m-2 day-1 from the shore line to the edge of the continental shelf. The mean life-span of the cohorts of 12 species of copepods is about 20 days. It is assumed that only 1 spawn occurs per generation-time and that the standing stock is turned-over during the life span of a cohort. The production ranges from 48.2 to 278 mg dry weight m-2 day-1 or 17.9 to 103 mg C m-2 day-1, according to the depth of the studied areas. One third of carnivorous production occurs among the copepods. So, it is assumed that the herbivorous and omnivorous production is about 2/3 of the total zooplanktonic production. This would be a more accurate estimate of secondary production. The standing stock of zooplankton and fishes are in the same order of magnitude; the ratio zooplanktonic production/total fishery is 0.8%.

Diel and seasonal timing of sound production by black drum (Pogonias cromis)

Acoustic recorders were used to document black drum (Pogonias cromis) sound production during their spawning season in southwest Florida. Diel patterns of sound production were similar to those of other sciaenid fishes and demonstrated increased sound levels from the late afternoon to early evening—a period that lasted up to 12 hours during peak season. Peak sound production occurred from January through March when water temperatures were between 18° and 22°C. Seasonal trends in sound production matched patterns of black drum reproductive readiness and spawning reported previously for populations in the Gulf of Mexico. Total acoustic energy of nightly chorus events was estimated by integration of the sound pressure amplitude with duration above a threshold based on daytime background levels. Maximum chorus sound level was highly correlated with total acoustic energy and was used to quantitatively represent nightly black drum sound production. This study gives evidence that long-term passive acoustic recordings can provide information on the timing and location of black drum reproductive behavior that is similar to that provided by traditional, more costly methods. The methods and results have broad application for the study of many other fish species, including commercially and recreationally valuable reef fishes that produce sound in association with reproductive behav

Seasonal, diel, and lunar spawning periodicities and associated sound production of white seabass (Atractoscion nobilis)

Spawning periodicities of white seabass (Atractoscion nobilis) were evaluated by observing spawning behavior, by collecting eggs, and monitoring recognizable sounds produced during the release of gametes. A total of 297 spawning events were documented from 15 male and 47 female white seabass contained within the seminatural confines of a 526-m3 net pen located in Catalina Harbor, Santa Catalina Island, California. Consistent spawning occurred from March through July 2001−03, and peaked in May at a photoperiod of 14 hours. Most spawning occurred within the 2-hour period following sunset or from 19:00−20:00 hours Pacific Standard Time. White seabass spawned at every phase of the lunar cycle; but an increase in successive spawning events followed the new moon. Most spawning occurred in water temperatures from 15 to 18°C, and there was no apparent correlation with tidal cycles. Seasonal and diel spawning periods were directly correlated with increases in the rate, intensity, and variety of white seabass sounds; this correlation may indicate that sounds function to enhance reproductive success. These findings can be extended to further develop seasonal fishery regulations and to better comprehend the role of sound in the reproduction of sound-producing fishes.

Changes in egg production of the western rock lobster (Panulirus cygnus) associated with appendage damage

Data collected during fish-ery-independent sampling programs were used to examine the impact of appendage damage (indicated by lost or regenerated legs and antennae) on the reproductive output of female western rock lobster (Panulirus cygnus). Most of the damaged females sampled had one (53%), two (27%), or three (13%) appendages that had been lost or that were regenerating. Appendage damage was associated with the reduced probability of a female developing ovigerous setae; and if setae were produced, with the reduced probability that females would produce more than one batch of eggs within a season. These effects were more pronounced as the number of damaged appendages increased. From data collected in 2002, it was estimated that the total number of eggs produced by mature females caught in the fishery was significantly reduced (P<0.001) by 3–9% when the impact of appendage damage was included.