Defining plausible migration rates based on historical tagging data: a Bayesian mark-recapture model applied to English sole (Parophrys vetulus)

A generalized Bayesian population dynamics model was developed for analysis of historical mark-recapture studies. The Bayesian approach builds upon existing maximum likelihood methods and is useful when substantial uncertainties exist in the data or little information is available about auxiliary parameters such as tag loss and reporting rates. Movement rates are obtained through Markov-chain Monte-Carlo (MCMC) simulation, which are suitable for use as input in subsequent stock assessment analysis. The mark-recapture model was applied to English sole (Parophrys vetulus) off the west coast of the United States and Canada and migration rates were estimated to be 2% per month to the north and 4% per month to the south. These posterior parameter distributions and the Bayesian framework for comparing hypotheses can guide fishery scientists in structuring the spatial and temporal complexity of future analyses of this kind. This approach could be easily generalized for application to other species and more data-rich fishery analyses.

Measurements of total scattering spectra from bocaccio (Sebastes paucispinis)

Marine sportfishing in southern California is a huge industry with annual revenues totaling many billions of dollars. However, the stocks of lingcod and six rockfish species have been declared overfished by the Pacific Fisheries Management Council. As part of a multifaceted fisheries management plan, marine conservation areas, covering many million square nautical miles, have been mandated. To monitor the recovery of the rockfish stocks in these areas, scientists are faced with the following challenges: 1) multiple species of rockfish exist in these areas; 2) the species reside near or on the bottom at depths of 80 to 300 m; and 3) they are low in numerical density. To meet these challenges, multifrequency echosounders, multibeam sonar, and cameras mounted on remotely operated vehicles are frequently used (Reynolds et al., 2001). The accuracy and precision of these echosounder results are largely dependent upon the accuracy of the species classification and target strength estimation (MacLennan and Simmonds, 1992).

Benthic invertebrates that form habitat on deep banks off southern California, with special reference to deep sea coral

There is increasing interest in the potential impacts that fishing activities have on megafaunal benthic invertebrates occurring in continental shelf and slope ecosystems. We examined how the structure, size, and high-density aggregations of invertebrates provided structural relief for fishes in continental shelf and slope ecosystems off southern California. We made 112 dives in a submersible at 32−320 m water depth, surveying a variety of habitats from high-relief rock to flat sand and mud. Using quantitative video transect methods, we made 12,360 observations of 15 structure-form-ing invertebrate taxa and 521,898 individuals. We estimated size and incidence of epizoic animals on 9105 sponges, black corals, and gorgonians. Size variation among structure-form-ing invertebrates was significant and 90% of the individuals were <0.5 m high. Less than 1% of the observations of organisms actually sheltering in or located on invertebrates involved fishes. From the analysis of spatial associations between fishes and large invertebrates, six of 108 fish species were found more often adjacent to invertebrate colonies than the number of fish predicted by the fish-density data from transects. This finding indicates that there may be spatial associations that do not necessarily include physical contact with the sponges and corals. However, the median distances between these six fish species and the invertebrates were not particularly small (1.0−5.5 m). Thus, it is likely that these fishes and invertebrates are present together in the same habitats but that there is not necessarily a functional relationship between these groups of organisms. Regardless of their associations with fishes, these invertebrates provide structure and diversity for continental shelf ecosystems off southern California and certainly deserve the attention of scientists undertaking future conservation efforts.

Exploring intraspecific life history patterns in sharks

Marine ecosystems compose the major source (85%) of world fisheries production (Garcia and Newton, 1997). Although only a few fish species tend to dominate fishery catches (Jennings et al., 2001), a large diversity of fishes representing varied taxonomic levels, ecological guilds, and life histories is commonly taken. Recently, 66% of global marine resources were determined to be either fully, heavily, or over-exploited (Botsford et al., 1997). Considering the current state of many fisheries, the large diversity of species taken globally, and the general lack of resources to adequately assess many stocks, it has become important to develop shortcuts that may provide methods fisheries scientists can use to determine which stocks are in danger of overexploitation and which recovery plans are appropriate when biological data are limited (Stobutzki et al., 2001).

On modeling and management of capture fisheries: one view

Sustainability of benefits from capture fisheries has been a concern of fisheries scientists for a long time. The development of fisheries management models reflects the historical debate (from maximum sustainable yield to maximum economic yield, and so on) of what benefits are valued and need to be sustained. Social and anthropological research needs an increased emphasis on bio-socioeconomic models to effectively determine directions for fisheries management.

Participatory research in giant clam farming

Research into developing farming methods for giant clams at the ICLARM Coastal Aquaculture Centre in the Solomon Islands has proceeded in parallel with a program of village-based trials. This program is an attempt to involve the envisaged recipients of technology at a very early stage. The considerations, design and initial implementation of this program from 1988 to 1990 are described in this article. The expansion, impact and results of the program will be the subject of future publications by the scientists involved.

A simple and inexpensive fish tagging method

In many developing countries, availability of suitable tags for use in genetics and aquaculture research has been a problem as they are often expensive and have to be imported from other countries. A simple and inexpensive method used by scientists in Ghana that can be tried and improved by others is described in this article.

Ecosystem function and biodiversity on coral reefs

The article highlights a workshop held in Key West, Florida in November 1993 attended by a group of 35 international scientists where topics of ecosystem function and biodiversity on coral reefs were discussed.

Towards improved linkage between research and management in marine fisheries

This article provides an example of weak linkages between research and fisheries management despite the pressure of many "actors" and institutions on both sides. Managers must learn to listen to scientists; the latter need to become entrepreneural; and appropriate fora are required to bring the actors together.

Decision analysis applied to the fishery of the sea snail Concholepas concholepas from central northern coast of Chile

Formal decision analysis was applied to the management of loco (Concholepas concholepas, Fam. Muricidae) in Chile, 29-35 degrees S. Four interested groups were considered "Fishers", "Scientists", "Buyers" and the "State", along with three fishing effort levels and four subobjectives. The method was found to encourage the emergence of a consensus (here: halving of effort), and is recommended for use in other fisheries.

SEACORM Net - Southeast Asia's coral reef monitoring network

The region's scientists work together to formed the SEACORM Net (Southeast Asia Coral Reef Monitoring Network) for better integration of information and resources. The group intends to establish a strong working relationship between member countries, share information and lessons learnt, inform and update each other on research and monitoring activities in each country, and provide a mechanism for cross-country assistance and collaboration.

European Union supports project to strengthen fisheries and biodiversity management in African, Caribbean, and Pacific (ACP) countries

Proper resource management implies a better understanding of ecosystems and the conservation of biodiversity. Scientists from developing countries often have limited information on their aquatic resources because of many difficulties in accessing and exchanging information on a national and international level. The project described not only aims to strengthen the scientific capacity of fisheries scientists in ACP institutions but it is also expected to create an awareness among fisheries researchers and managers of the importance of conserving biodiversity for the sustainable use of living aquatic resources. This will be achieved through training, building a network of regional and transregional cooperation using modern communication facilities, the promotion of research and the distribution and improvement of fisheries management tools. It is hoped that these capabilities will enable fisheries scientists in ACP countries to actively contribute towards a discussion to solve common problems originating from the endangering of the ecological basis of their fisheries.

Comparison of two approaches for estimating natural mortality based on longevity

Vetter (1988) noted that her review of the estimation of the instantaneous natural mortality rate (M) was initiated by a discussion among colleagues that identified M as the single most impor ta nt but least well-estimated parameter in fishery models. A lthough much has been accomplished in the inter vening years, M remains one of the most difficult parameters to estimate in fishery stock assessments. A number of novel approaches using tagging and telemetry data provide promise for making reliable direct estimates of M for a given stock (Hearn et al., 1998 ; Frusher and Hoenig, 2001; Hightower et al., 2001; Latour et al., 2003; Pollock et al., 2004). However, such methods are often impracticable and fishery scientists must approximate M by using estimates made for other stocks of the same or similar species or by predicting M from features of the species’ life history (Beverton and Holt, 1959; Beverton, 1963; Alverson and Carney, 1975; Pauly, 1980; Hoenig, 1983; Peterson and Wroblewski, 1984; Roff, 1984; Gunderson and Dygert, 1988; Chen and Watanabe, 1989; Charnov, 1993; Jensen, 1996; Lorenzen, 1996).

Age validation of quillback rockfish (Sebastes maliger) using bomb radiocarbon

Rockfishes (Sebastes spp.) support one of the most economically important f isheries of the Pacific Northwest and it is essential for sustainable management that age estimation procedures be validated for these species. Atmospheric testing of thermonuclear devices during the 1950s and 1960s created a global radiocarbon (14C) signal in the ocean environment that scientists have identified as a useful tracer and chronological marker in natural systems. In this study, we first demonstrated that fewer samples are necessary for age validation using the bomb-generated 14C signal by emphasizing the utility of the time-specific marker created by the initial rise of bomb-14C. Second, the bomb-generated 14C signal retained in fish otoliths was used to validate the age and age estimation method of the quillback rockfish (Sebastes maliger) in the waters of southeast Alaska. Radiocarbon values from the first year’s growth of quillback rockfish otoliths were plotted against estimated birth year to produce a 14C time series spanning 1950 to 1985. The initial rise in bomb-14C from prebomb levels (~ –90‰) occurred in 1959 [±1 year] and 14C levels rose relatively rapidly to peak Δ14C values in 1967 (+105.4‰) and subsequently declined through the end of the time series in 1985 (+15.4‰). The agreement between the year of initial rise of 14C levels from the quillback rockfish time series and the chronology determined for the waters of southeast Alaska from yelloweye rockfish (S. ruberrimus) otoliths validated the aging method for the quillback rockfish. The concordance of the entire quillback rockfish 14C time series with the yelloweye rockfish time series demonstrated the effectiveness of this age validation technique, confirmed the longevity of the quillback rockfish up to a minimum of 43 years, and strongly confirms higher age estimates of up

Letter and Recollections of Alexander Agassiz: The 1891 Albatross Expedition

Presented here is another in the list of historic accounts of iconic research cruises of the USFC Steamer Albatross, this a reminiscence of the renowned scientist Alexander Agassiz edited by his son G. R. Agassiz, a chapter from the volume “Letters and Recollections of Alexander Agassiz,” published in 1913. Agassiz made three major cruises in the Albatross in 1891, 1899–1900, and 1904–05, adding greatly to the world’s store of specimens and knowledge of thalasography, his favored term for oceangraphy, and specifically of the Pacific Ocean. Having made important cruises and studies with the Blake in the Caribbean, he sought to do comparable research in the Pacific. His opportunity came in 1890, and with the consent of President Benjamin Harrison, he took charge of this Albatross research cruise, paying much of the expense himself. In contrast with the other ships he had been on, he found the laboratories, equipment, and furnishings to be comparatively luxurious and extremely well appointed for his work. Further, the Albatross was then captained by Lieutenant Commander Zera Luther Tanner who seemed to take as much interest in the oceanographic research as did the scientists, and Agassiz appreciated working with him, too. Little of the original text has been altered, and readers are cautioned that some of the views expressed may reflect unfortunate prejudices of that era toward individuals, nationalities, etc.