Physiological ecology of juvenile chinook salmon (Oncorhynchus tshawytscha) at the southern end of their distribution, the San Francisco Estuary and Gulf of the Farallones, California

Juvenile chinook salmon, Oncorhynchus tshawytscha, from natal streams in California’s Central Valley demonstrated little estuarine dependency but grew rapidly once in coastal waters. We collected juvenile chinook salmon at locations spanning the San Francisco Estuary from the western side of the freshwater delta—at the confluence of the Sacramento and San Joaquin Rivers—to the estuary exit at the Golden Gate and in the coastal waters of the Gulf of the Farallones. Juveniles spent about 40 d migrating through the estuary at an estimated rate of 1.6 km/d or faster during their migration season (May and June 1997) toward the ocean. Mean growth in length (0.18 mm/d) and weight (0.02 g/d) was insignificant in young chinook salmon while in the estuary, but estimated daily growth of 0.6 mm/d and 0.5 g/d in the ocean was rapid (P≤0.001). Condition (K factor) declined in the estuary, but improved markedly in ocean fish. Total body protein, total lipid, triacylglycerols (TAG), polar lipids, cholesterol, and nonesterified fatty acids concentrations did not change in juveniles in the estuary, but total lipid and TAG were depleted in ocean juveniles. As young chinook migrated from freshwater to the ocean, their prey changed progressively in importance from invertebrates to fish larvae. Once in coastal waters, juvenile salmon appear to employ a strategy of rapid growth at the expense of energy reserves to increase survival potential. In 1997, environmental conditions did not impede development: freshwater discharge was above average and water temperatures were only slightly elevated, within the species’ tolerance. Data suggest that chinook salmon from California’s Central Valley have evolved a strong ecological propensity for a ocean-type life history. But unlike populations in the Pacific Northwest, they show little estuarine dependency and proceed to the ocean to benefit from the upwelling-driven, biologically productive coastal waters.

Time series analyses of biological and environmental variables for Suisun Bay and the Sacramento and San Joaquin rivers

EXTRACT (SEE PDF FOR FULL ABSTRACT): Arima analysis was used to compute cross-correlations between principal component axes that described environmental variables, chlorophyll concentration and zooplankton density for the Sacramento and San Joaquin rivers and Suisun Bay. ... Cross-correlations among the time series may provide information about links between environmental and biological variables within the estuary and the possible influence of climate.

Influence of climate on environmental factors associated with long-term changes in chlorophyll production for the Sacramento-San Joaquin delta and Suisun Bay, California

Long-term changes in chlorophyll production were predicted from environmental variables for the Sacramento and San Joaquin rivers and Suisun Bay using Box-Jenkins transfer function models. Data used for the analyses were collected semimonthly or monthly between 1971 and 1987. Transfer function models developed to describe changes in chlorophyll production over time as a function of environmental variables were characterized by lagged responses and described between 39 and 51 percent of the data variation. Significant correlations between environmental variables and the California climate index (CA SLP) were used to develop a conceptual model of the link between regional climate and estuarine production.

Physical, chemical, and biological characterization of water year types in the San Francisco Bay estuary [abstract]

EXTRACT (SEE PDF FOR FULL ABSTRACT): Twenty-three years of physical, chemical, and biological data were used to characterize conditions associated with wet, normal, dry, and critical water year types in the upper San Francisco Bay estuary.

The influence of climate on phytoplankton communities in the upper San Francisco estuary

EXTRACT (SEE PDF FOR FULL ABSTRACT): The 1977 climate shift was characterized by low chlorophyll a concentrations and a shift in phytoplankton community composition throughout the upper San Francisco Bay estuary. ... For climate to be a driving force in phytoplankton communities, it must affect mechanisms that control biomass and community composition. The influence of climate on environmental conditions and phytoplankton community composition among water-year types was examined using 19 years of physical, chemical, and phytoplankton data collected monthly at 15 stations throughout the estuary.