Using experiments and expert judgment to model catchability of Pacific rockfishes in trawl surveys, with application to bocaccio (Sebastes paucispinis) off British Columbia

The time series of abundance indices for many groundfish populations, as determined from trawl surveys, are often imprecise and short, causing stock assessment estimates of abundance to be imprecise. To improve precision, prior probability distributions (priors) have been developed for parameters in stock assessment models by using meta-analysis, expert judgment on catchability, and empirically based modeling. This article presents a synthetic approach for formulating priors for rockfish trawl survey catchability (qgross). A multivariate prior for qgross for different surveys is formulated by using 1) a correction factor for bias in estimating fish density between trawlable and untrawlable areas, 2) expert judgment on trawl net catchability, 3) observations from trawl survey experiments, and 4) data on the fraction of population biomass in each of the areas surveyed. The method is illustrated by using bocaccio (Sebastes paucipinis) in British Columbia. Results indicate that expert judgment can be updated markedly by observing the catch-rate ratio from different trawl gears in the same areas. The marginal priors for qgross are consistent with empirical estimates obtained by fitting a stock assessment model to the survey data under a noninformative prior for qgross. Despite high prior uncertainty (prior coefficients of variation ≥0.8) and high prior correlation between qgross, the prior for qgross still enhances the precision of key stock assessment quantities.

Evidence of hook competition in longline surveys

Catch rates from surveys are used as indices of abundance for many fish species. Relative abundance estimates from surveys with longline gear do not usually account for possible effects of gear saturation, which potentially creates competition among fish for baited hooks and misrepresentations of abundance trends. We examined correlations between catch rates of sablefish (Anoplopoma fimbria) and giant grenadier (Albatrossia pectoralis) and between sablefish and shortraker (Sebastes borealis) and rougheye rockfish (Sebastes aleutianus) from 25 years of longline surveys in Alaska waters for evidence of competition for hooks. Sablefish catch rates were negatively correlated with giant grenadier catch rates in all management areas in Alaskan waters, and sablefish and rockfish were negatively correlated in five of the six areas, indicating that there is likely competition for hooks during longline surveys. Comparative analyses were done for trawl survey catch rates, and no negative correlations were observed, indicating that the negative correlations on the longline surveys are not due to differing habitat preferences or direct competition. Available adjustments for gear saturation may be biased if the probability of capture does not decrease linearly with baited hooks. A better understanding of each fish species’ catch probabilities on longline gear are needed before adjustments for hook competition can be made.

Estimating species and size composition of rockfishes to verify targets in acoustic surveys of untrawlable areas

Rockfish (Sebastes spp.) biomass is difficult to assess with standard bottom trawl or acoustic surveys because of their propensity to aggregate near the seafloor in highrelief areas that are inaccessible to sampling by trawling. We compared the ability of a remotely operated vehicle (ROV), a modified bottom trawl, and a stereo drop camera system (SDC) to identify rockfish species and estimate their size composition. The ability to discriminate species was highest for the bottom trawl and lowest for the SDC. Mean lengths and size distributions varied among the gear types, although a larger number of length measurements could be collected with the bottom trawl and SDC than with the ROV. Dusky (S. variabilis), harlequin (S. variegatus), and northern rockfish (S. polyspinis), and Pacific ocean perch (S. alutus) were the species observed in greatest abundance. Only dusky and northern rockfish regularly occurred in trawlable areas, whereas these two species and many more occurred in untrawlable areas. The SDC was able to resolve the height of fish off the seafloor, and some of the rockfish species were observed only near the seafloor in the acoustic dead zone. This finding is important, in that fish found exclusively in the acoustic dead zone cannot be assessed acoustically. For these species, methods such as bottom trawls, long-lines, or optical surveys using line transect or area swept methods will be the only adequate means to estimate the abundance of these fishes. Our results suggest that the selection of appropriate methods for verifying targets will depend on the habitat types and species complexes to be examined.

Results of bottom trawl surveys carried out in Vietnamese waters (20-200 m) in 1996-1997

Bottom trawl surveys were conducted in the southwest monsoon season in 1996 (survey 1) and in the northeast monsoon season in 1996-97 (survey 2) throughout Vietnamese waters. The surveys mainly covered the depth zone 50-200 m but in the northeast monsoon season the depth zone 20-50 m was included in the northern and southern areas. Overall, 273 trawl hauls were conducted. The total biomass for Vietnamese waters in the depth zone 20-200 m was estimated at 700 000 t . Biomass estimates are given for the most abundant species. A relatively higher mean catch-per-unit effort (CPUE) was obtained from survey 2 than from survey 1 and in partcular at depth ranges 50-100 and 100-200 m in south Vietnam. Overall, the dominant families were Monacanthidae (34%), Carangidae (15%), Trichiuridae (9%) and Synodontidae (6%).

Using poststratification to improve abundance estimates from multispecies surveys: a study of juvenile flatfishes

Population assessments seldom incorporate habitat information or use previously observed distributions of fish density. Because habitat affects the spatial distribution of fish density and overall abundance, the use of habitat information and previous estimates of fish density can produce more precise and less biased population estimates. In this study, we describe how poststratification can be applied as an unbiased estimator to data sets that were collected under a probability sampling design, typical of many multispecies trawl surveys. With data from a multispecies survey of juvenile flatfish, we show how poststratification can be applied to a data set that was not collected under a probability sampling design, where both the precision and the bias are unknown. For each of four species, three estimates of total abundance were compared: 1) unstratified; 2) poststratified by habitat; and 3) poststratified by habitat and fish density (high fish density and low fish density) in nearby years. Poststratification by habitat gave more precise and (or) less design-biased estimates than an unstratified estimator for all species in all years. Poststratification by habitat and fish density produced the most precise and representative estimates when the sample size in the high fish-density and low fish-density strata were sufficient (in this study, n≥20 in the high fish-density stratum, n≥9 in the low fish-density stratum). Because of the complexities of statistically testing the annual stratified data, we compared three indices of abundance for determining statistically significant changes in annual abundance. Each of the indices closely approximated the annual differences of the poststratified estimates. Selection of the most appropriate index was dependent upon the species’ density distribution within habitat and the sample size in the different habitat areas. The methods used in this study are particularly useful for estimating individual species abundance from multispecies surveys and for retrospective st

Fishery-independent Bottom Trawl Surveys for Deep-water Fishes and Invertebrates of the U.S. Gulf of Mexico, 2002–08

From 2002 through 2008, the Mississippi Laboratories of the NMFS Southeast Fisheries Science Center, NOAA, conducted fishery-independent bottom trawl surveys for continental shelf and outer-continental shelf deep-water fishes and invertebrates of the U.S. Gulf of Mexico (50–500 m bottom depths). Five-hundred and ninety species were captured at 797 bottom trawl locations. Standardized survey gear and randomly selected survey sites have facilitated development of a fishery-independent time series that characterizes species diversity, distributions, and catch per unit effort. The fishery-independent surveys provide synoptic descriptions of deep-water fauna potentially impacted by various anthropogenic factors.

History of Alaska Red King Crab, Paralithodes camtschaticus, Bottom Trawl Surveys, 1940–61

Thirteen bottom trawl surveys conducted in Alaska waters for red king crab, Paralithodes camtschaticus, during 1940–61 are largely forgotten today even though they helped define our current knowledge of this resource. Government publications on six exploratory surveys (1940–49, 1957) included sample locations and some catch composition data, but these documents are rarely referenced. Only brief summaries of the other seven annual (1955–61) grid-patterned trawl surveys from the eastern Bering Sea were published. Although there have been interruptions in sampling and some changes in the trawl survey methods, a version of this grid-patterned survey continues through the present day, making it one of the oldest bottom-trawl surveys in U.S. waters. Unfortunately, many of the specific findings made during these early efforts have been lost to the research community. Here, we report on the methods, results, and significance of these early surveys, which were collated from published reports and the unpublished original data sheets so that researchers might begin incorporating this information into stock assessments, ecosystem trend analyses, and perhaps even revise the baseline population distribution and abundance estimates.

A Single-armed Manta-board as a New Diver-controlled Planing Board and Its Use for Underwater Surveys

Due to inadequacies of previous underwater towing techniques and the special needs of a recent underwater survey, a modified mania-board technique was developed. With this new technique, the diver holds on to the manta-board with one arm; consequently, the board is referred to as a single-armed manta-board (sam-board). The sam-board proved inexpensive and highly maneuverable, allowing the divers to freely collect samples or record information. Through some experimenting with the board and changing some of the variables, such as rope lengths, towing speeds, etc., a highly efficient towing method can be achieved. Preplanning and strict diving safety procedures must, however, be implemented to assure efficiency. This paper presents the materials, guidelines for board construction, equipment, and preplanning and diving safety procedures necessary for the sam-board towing operation.

South Area still waters 1995 November surveys

This is the South Area still waters 1995 November surveys from the National Rivers Authority, 1996. The report focuses on the surveys of ten Cheshire Meres (Betley, Budworth, Combermere, Hatchmere, Oak mere, Pick mere, Redes, Rostherne, Tabley, and Tatton) previously surveyed in November 1994 and May 1995. Eight others (Chapel Mere, Little Mere, Marbury Mere, Mere Mere, Oss Mere, Petty Pool, Quoisley Big Mere and Tabley Moat) were surveyed for the first time. Two other lakes, Carr Mill Dam and Pennington Flash, were surveyed. Neither of these are considered to be part of the Cheshire meres group of lakes but are of a Regional interest. This report discusses the results of the November 1995 survey before making a comparison between these and the November 1994 survey results. The section on results contains information about water column profile; nutrients (chlorophyll a; Phaeophytin; Nitrate and Nitrite; Ammonia; ortho-Phosphate; Silicate; and total Phosphorus.

Cheshire Meres 1994 November surveys

This is the Cheshire Meres 1994 November surveys report produced by the National Rivers Authority in 1995. The report focuses on some of Cheshire meres, which were showing evidence of increasing eutrophication, commonly due to anthropogenic inputs. Concern for the deterioration of the water quality of still waters has been translated by incorporating these priorities into the NRA North West Regional Environmental Strategy for Stillwaters. The meres were also being investigated as possible polluted waters under the EC Nitrate Directive. The ultimate aim is to formulate lakes management options in order to help preserve North West still waters and minimise future restoration programmes. For such pro-active work to be carried out, sufficient background data must be available. It should then be possible to fully assess the current status of these lakes, identify seasonal trends and detect significant point/diffuse pollution inputs. These surveys were the first of a series, and it was intended to repeat similar surveys in Summer and Autumn 1995, and include a further 20 meres.

Fish surveys on the Leven and Kent estuaries

This is the Wetland resource evaluation and the NRA's role in its conservation: Resource assessment report produced by North West Water in 1982. In this report data from a variety of sources in river Leven and Leven estuary have been examined to determine if there was any objective foundation for the allegations and for the assertion that poor fish catches were related to discharges of industrial effluent to the estuary. Catches of salmon and sea trout from the Leven did not appear to have suffered any long term declines and year to year fluctuations did not appear to be any more extreme than in other North West rivers. Fish surveys did not show any marked differences in the diversity or distribution of fish between the Kent and Leven estuaries but catches of flounders were consistently lower from the Leven estuary. Analysis of fisheries statistics of landings of fish and shellfish from Morecambe Bay did not show any evidence of localised declines in catches from the Leven estuary. Results of laboratory experiments suggested that populations of bivalve molluscs might be more at risk from the effects of discharges to the Leven estuary than resident or migratory fish.

The Kent estuary 1992 surveys. Summary of results

This is the Kent estuary 1992 surveys: Summary of results produced by the National Rivers Authority in 1993. The report summarises routine and baseline water quality surveys carried out on the Kent estuary during 1992. Baseline surveys are designed to respond to regional, national, and European requirements. During 1992 baseline surveys were carried out in June and December. Unfortunately, in June, samples could only be taken from stations 3, 7 and 8. For ease of interpretation the results have been presented in graph form, including the maximum and minimum parameter concentration and the appropriate Environmental Quality Standards (EQS). The parameters measured in this survey were physical parameters (temperature, BOD, dissolved oxygen, Ph, salinity, conductivity); nutrients (ammonia, phosphate, and nitrate); metals (Mercury, Nickel, Arsenic, Cadmium, Chromium, Cooper, Boron, and Zinc) and organic compounds.

Invasionsoft: a web-enabled tool for invasive species colonization predictions

Predicting and averting the spread of invasive species is a core focus of resource managers in all ecosystems. Patterns of invasion are difficult to forecast, compounded by a lack of user-friendly species distribution model (SDM) tools to help managers focus control efforts. This paper presents a web-based cellular automata hybrid modeling tool developed to study the invasion pattern of lionfish (Pterois volitans/miles) in the western Atlantic and is a natural extension our previous lionfish study. Our goal is to make publically available this hybrid SDM tool and demonstrate both a test case (P. volitans/miles) and a use case (Caulerpa taxifolia). The software derived from the model, titled Invasionsoft, is unique in its ability to examine multiple default or user-defined parameters, their relation to invasion patterns, and is presented in a rich web browser-based GUI with integrated results viewer. The beta version is not species-specific and includes a default parameter set that is tailored to the marine habitat. Invasionsoft is provided as copyright protected freeware at http://www.invasionsoft.com.