Manual for the Sampling Design Tool for ArcGIS

The Biogeography Branch’s Sampling Design Tool for ArcGIS provides a means to effectively develop sampling strategies in a geographic information system (GIS) environment. The tool was produced as part of an iterative process of sampling design development, whereby existing data informs new design decisions. The objective of this process, and hence a product of this tool, is an optimal sampling design which can be used to achieve accurate, high-precision estimates of population metrics at a minimum of cost. Although NOAA’s Biogeography Branch focuses on marine habitats and some examples reflects this, the tool can be used to sample any type of population defined in space, be it coral reefs or corn fields.

Late Holocene environmental variability in the upper San Francisco Estuary as reconstructed from tidal marsh sediments

EXTRACT (SEE PDF FOR FULL ABSTRACT): Tidal marsh sediments collected from Browns Island in the lower Sacramento/San Joaquin Delta, California, are used to reconstruct environmental variability over the past 6.8 ka. Calibrated radiocarbon dates provide chronostratigraphic control. Trace metal analyses, grain-size variability, organic content, and macrofossils are used to define short- and long-term variations in relative salinity and inundation frequency. Aggradation began in subtidal fresh water conditions about 6.8 ka. Subtidal aggradation of clayey silts continued until about 6.3 ka, when conditions shifted toward a lower intertidal brackish marsh environment. By 5.1 ka, a brackish marsh plain had evolved, with surface water freshening after 4.1 ka. Conditions returned to brackish similar to the present after 2.3 ka.

Multiple-proxy lacustrine record of moisture transport over western North America from 24,000 to 12,000 YBP, Lake Estancia, New Mexico [abstract]

EXTRACT (SEE PDF FOR FULL ABSTRACT): Pluvial Lake Estancia in central New Mexico experienced large and rapid fluctuations in surface area and elevation during the build-up to and termination of the last glacial maximum (LGM). Due to continuous groundwater discharge, a minimum pool covering about 400 square kilometers was maintained in the central basin until about 12,000 years ago, ensuring a continuous depositional sequence even during low stands of the lake. ... The sensitive response to fluctuations in climate by several independent proxies at Estancia show that transport of Pacific moisture over western North America changed dramatically during the last Ice Age, perhaps comparable to the large and rapid changes in climate documented from high-latitude ice and North Atlantic marine sediments for the LCM and its transitions.

The near-AD 1600 multi-proxy puzzle

EXTRACT (SEE PDF FOR FULL ABSTRACT): A varve chronology with annual resolution (AD 1117-1992) has been developed recently for Santa Barbara Basin. Varve thickness and water content show an exponential trend consistent with expected patterns in the presence of sediment compaction over time. Annual varve thickness was decomposed into orthogonal components using singular spectrum analysis (SSA) to identify and retrieve inter-decadal oscillations. ... This suggests a connection with global-scale decadal cycles identified in the subtropical Pacific gyre circulation and, possibly, with solar-driven phenomena. The near-1600 AD event coincides with (a) a similarly sudden change of state in nearby Santa Monica Basin that triggered the onset of anoxic conditions and the preservation of laminated sediments, (b) an extreme drought over the American Southwest, (c) a transformation of the age structure in a number of forest populations throughout Arizona and New Mexico. Total organic carbon burial flux in Santa Barbara Basin varves also shows a marked change after AD 1600. A possible climatic link is proposed that involves pathways for moisture transport in the Southwest at decadal and longer time scales.

Geographic and economic setting of Lake Victoria

Lake Victoria, besides being the second largest in the world after Lake Superior, is the largest tropical lake. Its waters are shared by Kenya (6% of the surface area), Uganda (43%), and Tanzania (51%). Before dramatic structural and functional changes manifested in the lake's ecosystem especially in the 1980s, fish life flourished in the lake's entire water column at all times of the year. Currently, the situation is much more different from what it was in the past. The exponential increase in the introduced Nile perch (Lates niloticus) and Nile tilapia (Oreochromis niloticus) stocks, siltation, wetland degradation and eutrophication have characterised the lake ecosystem. The two exotic species and the small native cyprinid (Rastrineobola argentea) form the basis of the commercial fishery that was once dominated by two native tilapiines (Oreochromis esculentus and Oreochromis variabilis) and five other large-bodied endemic fishes. Severe deoxygenation observed at shallow depths (Ochumba 1990; Hecky et al., 1994) indicates that a large volume of the lake is unable to sustain fish life. The Lake Victoria catchment is one of the most densely populated areas in East Africa, encompassing a population of about 30 million people. Widespread poverty resulting from high inflation rates, lack of opportunities and general unemployment have characterised the lakeside communities over much of the last two decades. The biophysical environment in which Lake Victoria exists makes the lake particularly susceptible to changes that occur as a result of human modification to the watershed or the lake itself, thus rendering benefits from the lake unsustainable.

Composition, biomass, distribution and population structure of the fish stocks

Until the 1970s, Lake Victoria had a multi-species fishery dominated by the tilapiine and haplochromine cichlids. There were important subsidiary fisheries for more than 20 genera of non-cichlid fishes, including catfishes (Bagrus docmak, Clarias gariepinus, Synodontis spp and Schilbe intermedius), the lungfish (Protopterus aethiopicus) and Labeo victorianus) (Kudhongania and Cordone 1974). Stocks of most of these species declined and others disappeared following the introduction of four tilapiines (Oreochromis niloticus, Oreochromis leucostictus, Tilapia rendalli and Tilapia zillit) and Nile perch (Lates niloticus) during the 1950s. Since then the commercial fishery in the Uganda portion of Lake Victoria has been dominated by the Nile perch, Nile tilapia (Oreochromis niloticus) and the native cyprinid species, Rastrineobola argentea (Mukene).

Evolution and management of the mukene (Rastrineobola argentea) fishery

Rastrineobola argentea locally known as mukene in Uganda, omena in Kenya and dagaa in Tanzania occurs in Lake Nabugabo, Lake Victoria, the Upper Victoria Nileand Lake Kyoga (Greenwood 1966). While its fishery is well established on Lakes Victoria and Kyoga, the species is not yet exploited on Lake Nabugabo. Generally such smaller sized fish species as R. argentea become important commercial species in lakes where they occur when catches of preferred largersized table fish start showing signs ofdecline mostly as a result of overexploitation. With the current trends of declining fish catches on Lake Nabugabo, human exploitation of mukene on this lake is therefore just a matter of time. The species is exploited both for direct human consumption and as the protein ingredient in the manufacture of animal feeds.

The socio-economic and cultural structures of the fisherfolk communities

Fishing communities that have exploited the resource for generations constitute the main stakeholder groups in the fisheries of Lake Victoria. Several studies have examined Uganda's Lake Victoria fishing communities and characterised key stakeholders at community level over the last decade (SEDAWOG 1999a and b; Geheb 1997; FeSEP 1997; Kitakule 1991). The communities are made up of scattered settlements at the shores and on islands. The categories of people living in these communities include fishers who consist primarily of large numbers of male youths who provide labour to boat and gear owners. There are resident and non-resident fish traders who after securing their supplies at the beaches, depart for their market destinations. In addition, there are fish processors, mostly operating traditional and improved smoking kilns. Many other people, dealing in provisions and supplies also stay at the beaches, their activities depending on the level of fish catch. The fishing communities of Lake Victoria, Uganda, include auxiliary livelihood activities such as boat building, net repairing and transportation; bait supply and beachside kiosks, video halls and retail shop business. Other economic activities are brick making, charcoal burning/wood trade, farming and livestock keeping.

Changes in phytoplankton communities and primary production

Lake Victoria is the second largest lake in the world (69000km2) by surface area, but it is the shallowest (69m maximum depth) of the African Great Lakes. It is situated across the equator at an altitude of 1240m and lies in a shallow basin between two uplifted ridges of the eastern and western rift valleys (Beadle 1974). Despite their tropical locations, African lakes exhibit considerable seasonality related to the alteration of warm, wet and cool, dry seasons and the accompanying changes in lucustrine stratification and mixing (Tailing, 1965; 1966; Melack 1979; Hecky& Fee 1981; Hecky& Kling,1981; 1987; Bootsma 1993; Mugidde 1992; 1993). Phytoplankton productivity, biomass and species composition change seasonally in response to variations in light environment and nutrient availability which accompany changes in mixed layer depth and erosion or stabilization of the metalimnion / hypolimnion (Spigel & Coulter 1996; Hecky et al., 1991; Tailing 1987). Over longer, millennial time scales, the phytoplankton communities of the African Great Lakes have responded to variability in the EastAfrican climate (Johnson 1996; Haberyan& Hecky, 1986) which also alters the same ecological factors (Kilham et al., 1986). Recently, over the last few decades, changes in external and or internal factors in Lake Victoria and its basin have had a profound inlluence on the planktic community of this lake (Hecky, 1993; Lipiatou et al., 1996). The lake has experienced 2-10x increases in chlorophyll and 2x increase in primary productivity since Tailing's observations in the early 1960s (Mugidde 1992, 1993). In addition to observed changes in the lake nutrient chemistry (Hecky & Mungoma, 1990; Hecky & Bugenyi 1992; Hecky 1993; Bootsma & Hecky 1993), the deep waters previouslyoxygenated to the sediment surface through most of the year are now regularly anoxic(Hecky et al., 1994).

The nutritional status of fishing and non-fishing communities of Lake Victoria basin

We examined socio-economic variables that contribute to malnutrition in selected communities in the Lake Victoria basin during 2001. The study was carried out in nine districts and hinterland communities up to 25 km awayfrom the beach were used as the reference population. The main variables examined were: feeding habits, income and intra-household food distribution and living standards. Others included disease and health, sanitation and hygiene, childcare and mothers' age and workload, weaning practices, agricultural production and food availability, care during pregnancy and food taboos.

The status and significance of invertebrate communities

Invertebrates constitute a major link in energy flow culminating into fish production in aquatic ecosystems. In tropical water bodies relatively little research has been done on invertebrate ecology especially their role in fishery production. European scientists through periodic expeditions to Africa in the last quarter of the 20th century carried out the earliest research on zooplankton. Rzoska (1957) listed these early workers including Stuhlmann (1888), Weltner (1897) and Mrazek (1897-1898). Daday (1907), Verestchagin (1915) and Delachaux (1917) undertook further work during the early twentieth century. These earlyworks provide a useful basis for tracking community changes by comparison with modem investigations. Worthington (1931) provided the first quantitative account of the zooplankton of Lake Victoria along with information on diurnal vertical migrations, compared to a temperate lake. The establishment of the East African Freshwater Fisheries Research Organisation (EAFFRO) at Jinja in 1947 enabled investigations on the fisheries, algae, invertebrates and water quality aspects of the lake (EAFFRO Annual Reports 1947-1977) to be regularly carried out. Macdonald (1956) made the first detailed observations on the biology of chaoborids and chironomids (IakefJies) in relation to the feeding of the elephant snout fish, Mormyrus kannume. A detailed study of the biology of the mayfly, Povilla adusta Navas with special reference to the diurnal rhythms of activity was carried out by Hartland-Rowe (1957). The search to unravel the ecological role of aquatic invertebrates in the production dynamics of the lake has taken invertebrate research to greater heights through recent investigations including Okedi (1990), Mavut

Implications of the industrial fish processing growth for the commercial fishery and fishers in Uganda

The study was undertaken to generate socio-economic information on fish market systems and performance of the industrial processing industry, which will guide the processes leading to modernization of the fisheries sector and, sustainability of Lake Victoria fisheries. The main objective of this study was to evaluate the socio-economic implications of the fish marketing systems with particular emphasis on fish export market in Uganda. The study thus, analysed the socio-economic characteristics of fishers and examinined fish marketing systems and the impacts on the fishing activities, food security, employment opportunities and incomes of fisher-folk communities.

Distribution of endangered native fish fauna and their conservation in Lake Victoria

Lake Victoria in East Africa, supports socio-economically important fisheries for more than 30 million inhabitants in the lake basin. The lake had until the 1970's a diverse fish assemblage dominated by haplochromines species which formed at least 83% of the fish biomass (Kudhongania & Cordone 1974). The more than 500 haplochromine species in Lake Victoria, over 99% of them endemic, exploited virtually all the food sources in the lake (Witte and van Oijen 1990). Each species had its own unique combination of food and habitat preference (Goldschmidt et al., 1990).

Impacts of fishing gears, fishing methods and fishing effort in the fisheries of Lake Victoria and proposals for management

The initial subsistence fisheries of Lake Victoria were dominated by two indigenous tilapiines, Oreochromis esculentus (Graham 1929) and Oreochromis variabilis Boulenger 1906, exploited with simple fishing crafts and gears that had little impact on the fish stocks (Jackson 1971). Commercial fisheries, targeting the tilapia fishery, started at the beginning of the 20th Centurywhen cotton flax gillnets were first introduced in 1905 into the Nyanza Gulf in Kenya. Gillnets were quickly adopted around the whole lake and consequently, the native methods of fishing soon died out (Jackson 1971). Following the introduction of gillnets, fishing boats and their propulsion methods were also improved. These improvements in fishing capacity coincided with development of urban centres and increasing human population around the lake, which increased the demand for fishery products. To satisfy the increasing demand, fishing effort increased greatly during the 20th century, despite the decline of catch per unit of effort (CPUE) (Jackson 1971; Ogutu-Ohwayo 1990). The initial catch rates of 127mm (5 inch) mesh size gill nets in the tilapia-based fishery, in 1905, was in the range of 50 to 100 fish per gillnet of approximately 50 m in length. However, twenty years later, the catch rates of gillnets of the same mesh size had declined to about six fish per net and gillnets of smaller mesh sizes, which had better catch rates, had been introduced suggesting overfishing (Worthington and Worthington, 1933).

Nutrient status and thermal stratification in Lake Victoria

Worldwide, human activity in the watershed has been found to induce lake responses at various levels, including at population and ecosystem scale. Recently, Carignan and Steedman (2000) reported on disruptions of biogeochemical cycles in temperate lakes following watershed deforestation and lor wildfire and Carignan et al., (2000 a, b) concluded that water quality and aquatic biota are strongly influenced by disturbances in the watershed. Similarly, Lake Victoria is no exception as people in its catchment have exploited it for the last hundred years or more, but have now begun to understand the extent to which they have thrown the lake into disorder and how their increasing activity in the watershed have driven some environmental changes within and around the lake.