A decade of monitoring and management of freshwater algae, in particular Cyanobacteria, in England and Wales

Although the toxicity of cyanobacteria has been known for many years, cyanobacteria-related problems in the UK were generally limited in frequency. However, this all changed and became of national concern following the exceptional environmental conditions in the autumn of 1989, when widespread cyanobacterial blooms and scums developed in fresh waters. This paper summarises the Environment Agency's monitoring programme for freshwater algae since 1991 and describes the actions the Environment Agency has taken as a result of the monitoring data.

Regional and seasonal patterns of epipelagic fish assemblages from the central California Current

The coastal Pacific Ocean off northern and central California encompasses the strongest seasonal upwelling zone in the California Current ecosystem. Headlands and bays here generate complex circulation features and confer unusual oceanographic complexity. We sampled the coastal epipelagic fish community of this region with a surface trawl in the summer and fall of 2000–05 to assess patterns of spatial and temporal community structure. Fifty-three species of fish were captured in 218 hauls at 34 fixed stations, with clupeiform species dominating. To examine spatial patterns, samples were grouped by location relative to a prominent headland at Point Reyes and the resulting two regions, north coast and Gulf of the Farallones, were plotted by using nonmetric multidimensional scaling. Seasonal and interannual patterns were also examined, and representative species were identified for each distinct community. Seven oceanographic variables measured concurrently with trawling were plotted by principal components analysis and tested for correlation with biotic patterns. We found significant differences in community structure by region, year, and season, but no interaction among main effects. Significant differences in oceanographic conditions mirrored the biotic patterns, and a match between biotic and hydrographic structure was detected. Dissimilarity between assemblages was mostly the result of differences in abundance and frequency of occurrence of about twelve common species. Community patterns were best described by a subset of hydrographic variables, including water depth, distance from shore, and any one of several correlated variables associated with upwelling intensity. Rather than discrete communities with clear borders and distinct member species, we found gradients in community structure and identified stations with similar fish communities by region and by proximity to features such as the San Francisco Bay.

Ichthyoplankton community structure and comparative trophodynamics in an estuarine transition zone

Surveys were conducted to evaluate and compare assemblage structure and trophodynamics of ichthyoplankton, and their variability, in an estuarine transition zone. Environmental gradients in the saltfront region of the Patuxent River subestuary, Chesapeake Bay, were hypothesized to define spatiotemporal distributions and assemblages of ichthyoplankton. Larval fishes, zooplankton, and hydrographic data were collected during spring through early summer 2000 and 2001. Larvae of 28 fish species were collected and species richness was similar each year. Total larval abundance was highest in the oligohaline region down-estuary of the salt front in 2000, but highest at the salt front in 2001. Larvae of anadromous fishes were most abundant at or up-estuary of the salt front in both years. Two ichthyoplankton assemblages were distinguished: 1) riverine—characterized predominantly by anadromous species (Moronidae and Alosinae); and 2) estuarine—characterized predominantly by naked goby (Gobiosoma bosc) (Gobiidae). Temperature, dissolved oxygen, salinity-associated variables (e.g., salt-front location), and concentrations of larval prey, specifically the calanoid copepod Eurytemora affinis and the cladoceran Bosmina longirostris, were important indicators of larval fish abundance. In the tidal freshwater region up-estuary of the salt front, there was substantial diet overlap between congeneric striped bass (Morone saxatilis) and white perch (M. americana) larvae, and also larvae of alewife (Alosa pseudoharengus) (overlap= 0.71–0.93). Larval abundance, taxonomic diversity, and dietary overlap were highest within and up-estuary of the salt front, which serves to both structure the ichthyoplankton community and control trophic relationships in the estuarine transition zone.

Fish assemblages associated with three types of artificial reefs: density of assemblages and possible impacts on adjacent fish abundance

We evaluated the effectiveness of wooden artificial reefs (ARs) as fish habitat. Three types of ARs, made of cedar logs, broadleaf tree logs, and PVC pipes, respectively, were deployed in triplicate at 8-m depth off Maizuru, Kyoto Prefecture, Sea of Japan, in May 2004. Fish assemblages associated with each of the nine ARs were observed by using SCUBA twice a month for four years. Fish assemblages in the adjacent habitat were also monitored for two years before and four years after reef deployment. In the surveyed areas (ca. 10 m2) associated with each of the cedar, broadleaf, and PVC ARs, the average number of fish species was 4.14, 3.49, and 3.00, and the average number of individuals was 40.7, 27.9, and 20.3, respectively. The estimated biomass was also more greater when associated with the cedar ARs than with other ARs. Visual censuses of the habitat adjacent to the ARs revealed that the number of fish species and the density of individuals were not affected by the deployment of the ARs. Our results support the superiority of cedar as an AR material and indicate that deployment of wooden ARs causes no reduction of fish abundance in adjacent natural reefs.

Assessment of habitat quality for juvenile California halibut (Paralichthys californicus) in a seasonally arid estuary

We evaluated habitat quality for juvenile California halibut (Paralichthys californicus) in a Pacific Coast estuary lacking in strong salinity gradients by examining density, recent otolith growth rates, and gut fullness levels of wild-caught and caged juveniles for one year. Juveniles <200 mm standard length were caught consistently in the inner, central, and outer sections of the estuary. The density of juveniles was two times higher in the inner estuary during most of the year, consistent with active habitat selection by part of the population. A generalized linear model indicated temperature, sampling time, and the interaction between salinity and temperature were significantly related to density. However, the model explained only 21% of the variance. Gut fullness levels of wild-caught juveniles were highest during the summer, but recent otolith growth rates were not related to temperature. The proportion of individuals feeding successfully indicated that seasonal differences in food availability are more important than spatial variation in prey abundance in driving feeding success. Feeding success of caged fishes was limited, precluding the use of growth rates as indicators of local habitat quality. However, marginal increment widths were reliable indicators of somatic growth at low growth rates over two-week periods. The relatively high growth rates and abundance of small wild-caught juveniles found throughout the estuary indicates that the entire estuary system has the potential for serving as nursery habitat.

Spatial and seasonal abundance of sand seatrout (Cynoscion arenarius) and silver seatrout (C. nothus) off the coast of Texas, determined with twenty years of data (1987–200

Sand seatrout (Cynoscion arenarius) and silver seatrout (C. nothus) are both found within the immediate offshore areas of the Gulf of Mexico, especially around Texas; however information is limited on how much distributional overlap really occurs between these species. In order to investigate spatial and seasonal differences between species, we analyzed twenty years of bay and offshore trawl data collected by biologists of the Coastal Fisheries Division, Texas Parks and Wildlife Department. Sand seatrout and silver seatrout were distributed differently among offshore sampling areas, and salinity and water depth appeared to correlate with their distribution. Additionally, within the northernmost sampling area of the gulf waters, water depth correlated significantly with the presence of silver seatrout, which were found at deeper depths than sand seatrout. There was also an overall significant decrease in silver seatrout abundance during the summer season, when temperatures were at their highest, and this decrease may have indicated a migration farther offshore. Sand seatrout abundance had an inverse relationship with salinity and water depth offshore. In addition, sand seatrout abundance was highest in bays with direct passes to the gulf and correlated with corresponding abundance in offshore areas. These data highlight the seasonal and spatial differences in abundance between sand and silver seatrout and relate these differences to the hydrological and geological features found along the Texas coastline.

Recalculated diet and daily ration of the shortfin mako (Isurus oxyrinchus), with a focus on quantifying predation on bluefish (Pomatomus saltatrix) in the northwest Atlantic Ocean

The diet and daily ration of the shortfin mako (Isurus oxyrinchus) in the northwest Atlantic were re-examined to determine whether fluctuations in prey abundance and availability are reflected in these two biological variables. During the summers of 2001 and 2002, stomach content data were collected from fishing tournaments along the northeast coast of the United States. These data were quantified by using four diet indices and were compared to index calculations from historical diet data collected from 1972 through 1983. Bluefish (Pomatomus saltatrix) were the predominant prey in the 1972–83 and 2001–02 diets, accounting for 92.6% of the current diet by weight and 86.9% of the historical diet by volume. From the 2001– 02 diet data, daily ration was estimated and it indicated that shortfin makos must consume roughly 4.6% of their body weight per day to fulfill energetic demands. The daily energetic requirement was broken down by using a calculated energy content for the current diet of 4909 KJ/kg. Based on the proportional energy of bluefish in the diet by weight, an average shortfin mako consumes roughly 500 kg of bluefish per year off the northeast coast of the United States. The results are discussed in relation to the potential effect of intense shortfin mako predation on bluefish abundance in the region.

Temporal variation in growth of yellowfin tuna (Thunnus albacares) larvae in the Panama Bight, 1990

Tuna larvae (at flexion, postflexion, and transformation stages) were collected by dip net and light traps at night in the northwestern Panama Bight during the season of reduced upwelling (June−September) of 1990, 1991, 1992, and 1997. The larvae were identified as yellowfin tuna (Thunnus albacares) by mtDNA analysis. Ichthyoplankton data from bongo and Tucker trawl tows were used to examine the potential prey abundance in relation to the mean size-at-age and growth rates of the yellowfin tuna larvae and their otoliths. The most rapid growth rates occurred during June 1990 when plankton volumes were at their highest levels. The lowest plankton volumes coincided with the lowest growth rates and mean sizes-at-age during the August−September 1991 period. High densities of larval fish were prevalent in the ichthyoplankton tows during the 1991 period; therefore intra- and interspecific competition for limited food resources may have been the cause of slower growth (density-dependent growth) in yellowfin tuna larvae The highest mean seasurface temperature and the lowest mean wind stress occurred during an El Niño-Southern Oscillation (ENSO) event during the 1997 period. There appeared to be no clear association between these environmental factors and larval growth rates, but the higher temperatures may have caused an increase in the short-term growth of otoliths in relat

Distribution, feeding condition, and growth of Japanese Spanish mackerel (Scomberomorus niphonius) larvae in the Seto Inland Sea

Distribution of eggs and larvae and feeding and growth of larvae of Japanese Spanish mackerel (Scomberomorus niphonius) were investigated in relation to their prey in the Sea of Hiuchi, the Seto Inland Sea, Japan, in 1995 and 1996. The abundance of S. niphonius eggs and larvae peaked in late May, corresponding with that of clupeid larvae, the major prey organisms of S. niphonius larvae. The eggs were abundant in the northwestern waters and the larvae were abundant in the southern waters in late May in both years, indicating a southward drift during egg and yolksac stages by residual f low in the central part of the Sea of Hiuchi. Abundance of clupeid larvae in southern waters, where S. niphonius larvae were abundant, may indicate a spawning strategy on the part of first-feeding S. niphonius larvae to encounter the spatial and temporal peak in ichthyoplankton prey abundance in the Seto Inland Sea. Abundance of the clupeid larvae was higher in 1995 than in 1996. Feeding incidence (percentage of stomachs with food; 85.3% in 1995 and 67.7% in 1996) and mean growth rate estimated from otolith daily increments (1.05 mm/d in 1995 and 0.85 mm/d in 1996) of S. niphonius larvae in late May were significantly higher in 1995. Young-of-the-year S. niphonius abundance and catch per unit of fishing effort of 1-year-old S. niphonius in the Sea of Hiuchi was higher in 1995, indicating a more successful recruitment in this year. Spatial and temporal correspondence with high ichthyoplankton prey concentration was considered one of the important determinants for the feeding success, growth, and survival of S. niphonius larvae.

Size-composition of Annual Landings in the White Shrimp, Litopenaeus setiferus, Fishery of the Northern Gulf of Mexico, 1960–2006: Its Trend and Relationships with Other Fishery-dependent Variable

The potential for growth overfishing in the white shrimp, Litopenaeus setiferus, fishery of the northern Gulf of Mexico appears to have been of limited concern to Federal or state shrimp management entities, following the cataclysmic drop in white shrimp abundance in the 1940’s. As expected from surplus production theory, a decrease in size of shrimp in the annual landings accompanies increasing fishing effort, and can eventually reduce the value of the landings. Growth overfishing can exacerbate such decline in value of the annual landings. We characterize trends in size-composition of annual landings and other annual fishery-dependent variables in this fishery to determine relationships between selected pairs of these variables and to determine whether growth overfishing occurred during 1960–2006. Signs of growth overfishing were equivocal. For example, as nominal fishing effort increased, the initially upward, decelerating trend in annual yield approached a local maximum in the 1980’s. However, an accelerating upward trend in yield followed as effort continued to increase. Yield then reached its highest point in the time series in 2006, as nominal fishing effort declined due to exogenous factors outside the control of shrimp fishery managers. The quadratic relationship between annual yield and nominal fishing effort exhibited a local maximum of 5.24(107) pounds (≈ MSY) at a nominal fishing effort level of 1.38(105) days fished. However, annual yield showed a continuous increase with decrease in size of shrimp in the landings. Annual inflation-adjusted ex-vessel value of the landings peaked in 1989, preceded by a peak in annual inflation-adjusted ex-vessel value per pound (i.e. price) in 1983. Changes in size composition of shrimp landings and their economic effects should be included among guidelines for future management of this white shrimp

The Northern Rockfish, Sebastes polyspinis, in Alaska: Commercial Fishery, Distribution, and Biology

The northern rockfish, Sebastes polyspinis, is the second most abundant rockfish in Alaska, and it supports a valuable trawl fishery. Little information is available, however, on either the biology of this species or its commercial fishery. To provide a synopsis of information on northern rockfish in Alaska, this study examined data for this species from commercial fishery observations in 1990–98 and from fishery-independent trawl surveys in 1980–99. Nearly all the commercial catch came from bottom trawling, mostly by large factory-trawlers, although smaller shore-based trawlers in recent years took an increasing portion of the catch in the Gulf of Alaska. Most of the northern rockfish catch in the Gulf of Alaska was taken by a directed fishery, whereas that of the Aleutian Islands predominantly came as discarded bycatch in the Atka mackerel fishery. In both regions, most of the catch was taken from a number of relatively small and discrete fishing grounds at depths of 75–150 m in the Gulf of Alaska and 75–175 m in the Aleutian Islands. These grounds, especially in the Gulf of Alaska, are on shallow rises or banks located on the outer continental shelf, and often are surrounded by deeper water. Five fishing grounds were identified in the Gulf of Alaska, and eleven in the Aleutian Islands. One fishing ground in the Gulf of Alaska, the “Snakehead” south of Kodiak Island, accounted for 46% of the total northern rockfish catch in this region. Analysis of the survey data generally revealed similar patterns of geographic distribution as those seen in the fishery, although some of the commercial fishing grounds did not stand out as areas of special abundance in the surveys. The surveys also found two areas of abundance that were not evident in the fishery data. Relatively few juvenile northern rockfish were caught in any of the surveys, but those taken in the Gulf of Alaska tended to occur more inshore and at shallower depths than adults. Individual size of northern rockfish was substantially larger in the Gulf of Alaska than in the Aleutian Islands according to both fishery and survey data. Analysis of age data from each region supports this, as Gulf of Alaska fish were found to grow significantly faster and reach a larger maximum length than those in the Aleutian Islands. Sex ratio in the Gulf of Alaska was nearly 50:50, but females predominated in the Aleutian Islands by a ratio of 57:43. In both regions, size of females was significantly larger than males.

Spotted Seals, Phoca largha, in Alaska

The worldwide literature on management of spotted seals, Phoca largha, was reviewed and updated, and aerial surveys weref lown in 1992 and 1993 to determine the species' distribution and abundance in U.S. waters. In April, spotted seals were found only in the Bering Sea ice front. In June, they were seen along deteriorating ice floes and fast ice in Norton Sound. Surveys along most of Alaska's western coast in August and September found over 2,500 spotted seals in Kuskokwim Bay and concentrations of 100-400 seals around Nunivak Island, Scammon Bay, Golovnin Bay/Norton Sound, Cape Espenberg/Kotzebue Sound, and Kasegaluk Lagoon. All of these sites have been used by spotted seals in the past. The sum of the highest counts, irrespective of year, was 3,570 seals (CV =0.06). This is not an abundance estimate for all spotted seals in the Bering Sea, because it does not account for animals in the water, and we did not survey the Asian coast and some islands. Also, spotted seals and harbor seals, Phoca vitulina, are too similar in appearance to be identified accurately from the air, so our results probably include a mix of these species where their ranges overlap.

Survey Assessment of Semi-pelagic Gadoids: The Example of Walleye Pollock, Theragra chalcogramma, in the Eastern Bering Sea

Assessment of walleye pollock, Theragra chalcogramma, in the eastern Bering Sea is complicated because the species is semi-pelagic in habit. Annual bottom trawl surveys provide estimates of demersal abundance on the eastern Bering Sea shelf. Every third year (starting in 1979), an extended area of the shelf and slope is surveyed and an echo integration-midwater trawl survey provides estimates of pollock abundance in midwater. Overall age-specific population and biomass estimates are obtained by summing the demersal and midwater results, assuming that the bottom trawl samples only pollock inhabiting the lower 3 m of the water column. Total population estimates have ranged from 134 x 109 fish in 1979 to 27 x 109 fish in 1988. The very high abundance observed in 1979 reflects the appearance of the unusually large 1978 year class. Changes in age-specific abundance estimates have documented the passage of strong (1978, 1982, and 1984) and weak year classes through the fishery. In general, older fish are more demersally oriented and younger fish are more abundant in midwater, but this trend was not always evident in the patterns of abundance of 1- and 2-year-old fish. As the average age of the population has increased, so has the relative proportion of pollock estimated by the demersal surveys. Consequently, it is unlikely that either technique can be used independently to monitor changes in abundance and age composition. Midwater assessment depends on pelagic trawl samples for size and age composition estimates, so both surveys are subject to biases resulting from gear performance and interactions between fish and gear. In this review, we discuss survey methodology and evaluate assumptions regarding catchability and availability as they relate to demersal, midwater, and overall assessment.

Report of the Workshop on Blue Crab Stock Dynamics in Chesapeake Bay, December 13-15, 1982, Chesapeake Biological Laboratory

This workshop was convened to begin building a foundation of understanding for developing and evaluating proposed measures for the rational management of the blue crab fishery in Chesapeake Bay. Our goal was to generate a summary of knowledge of blue crab stock dynamics. Specifically, we intended to address, and hoped to estimate, the basic parameters of an exploited stock - growth, mortality, natality, migration rates, sex ratios and abundance. In one sense these objectives were simply a means for organizing our discussions. A second objective was to compile at the workshop pertinent data held by the major research institutions on Chesapeake Bay so all participants could see the kinds and extent of existing data. As with many stock assessment problems, tailoring an estimating procedure around known existing data can be more productive than deciding on a procedure and then trying to find the required data in someone else's files. Authors of papers contributed to the report: B.S. Hester and P.R. Mundy (p. 50); Qisheng Tang (p. 86); L. Eugene Cronin (p. 111); J.R. McConaugha (p. 128); Cluney Stagg and Phil Jones (p. 153).

The use of parasites in discriminating stocks of Pacific halibut (Hippoglossus stenolepis) in the northeast Pacific

The use of parasites as indicators of the stock structure of Pacific halibut (Hippoglossus stenolepis) in the northeast Pacific was investigated by using 328 adult (>55 cm fork length) halibut from 15 composite localities ranging from northern California to the northern Bering Sea and 96 juvenile (10–55 cm) halibut from five localities ranging from the northern Queen Charlotte Islands to the Bering Sea. Counts of eight selected parasite species (the juvenile acanthocephalans Corynosoma strumosum and C. villosum, the metacestode Nybelinia surmenicola, the digenean metacercaria Otodistomum sp., and the larval nematodes Anisakis simplex, Pseudoterranova decipiens, Contracaecum sp., and Spirurid gen. sp.) that produce infections of long duration, do not multiply in the host, and that have a relatively high abundance in at least one geographic locality were subjected to discriminant function analysis. Juvenile Pacific halibut showed no separation and, even though they were not heavily infected with parasites, the analysis suggested that juveniles could be a mixed stock. Three groups of adults were identified: fish from California to the southern Queen Charlotte Islands, those from the northern Queen Charlotte Islands to the central Bering Sea, and those from the central and north-ern Bering Sea. These groups suggest that the single stock concept be more thoroughly evaluated.