Shallow-water benthic habitats of southwest Puerto Rico

This report describes the creation and assessment of benthic habitat maps for shallow-water (<30m) marine environments of the Guánica/Parguera and Finca Belvedere Natural Reserve in southwest Puerto Rico. The objective was to provide spatially-explicit information on the habitat types, biological cover and live coral cover of the region’s coral reef ecosystem. These fine-scale habitat maps, generated by interpretation of 2010 satellite imagery, provide an update to NOAA’s previous digital maps of the U.S. Caribbean (Kendall et al., 2001) for these areas. Updated shallow-water benthic habitat maps for the Guánica/Parguera region are timely in light of ongoing restoration efforts in the Guánica Bay watershed. The bay is served directly by one river, the Rio Loco, which flows intermittently and more frequently during the rainy season. The watershed has gone through a series of manipulations and alterations in past decades, mainly associated with agricultural practices, including irrigation systems, in the upper watershed. The Guánica Lagoon, previously situated to the north of the bay, was historically the largest freshwater lagoon in Puerto Rico and served as a natural filter and sediment sink prior to the discharge of the Rio Loco into the Bay. Following alterations by the Southwest Water Project in the 1950s, the Lagoon’s adjacent wetland system was ditched and drained; no longer filtering and trapping sediment from the Rio Loco. Land use in the Guánica Bay/Rio Loco watershed has also gone through several changes (CWP, 2008). Similar to much of Puerto Rico, the area was largely deforested for sugar cane cultivation in the 1800s, although reforestation of some areas occurred following the cessation of sugar cane production (Warne et al., 2005). The northern area of the watershed is generally mountainous and is characterized by a mix of forested and agricultural lands, particularly coffee plantations. Closer to the coast, the Lajas Valley Agricultural Reserve extends north of Guánica Bay to the southwest corner of the island. The land use practices and watershed changes outlined above have resulted in large amounts of sediment being distributed in the Rio Loco river valley (CWP, 2008). Storm events and seasonal flooding also transport large amounts of sediment to the coastal waters. The threats of upstream watershed practices to coral reefs and the nearshore marine environment have been gaining recognition. Guánica Bay, and the adjacent marine waters, has been identified as a “management priority area” by NOAA’s Coral Reef Conservation Program (CRCP, 2012). In a recent Guánica Bay watershed management plan, several critical issues were outlined in regards to land-based sources of pollution (LBSP; CWP, 2008). These include: upland erosion from coffee agriculture, filling of reservoirs with sediment, in-stream channel erosion, loss of historical Guánica lagoon, legacy contaminants and sewage treatment (CWP, 2008). The plan recommended several management actions that could be taken to reduce impacts of LBSP, which form the basis of Guánica watershed restoration efforts.

Using wildlife activity and antibiotic resistance analysis to model bacterial water quality in coastal ponds

Models that help predict fecal coliform bacteria (FCB) levels in environmental waters can be important tools for resource managers. In this study, we used animal activity along with antibiotic resistance analysis (ARA), land cover, and other variables to build models that predict bacteria levels in coastal ponds that discharge into an estuary. Photographic wildlife monitoring was used to estimate terrestrial and aquatic wildlife activity prior to sampling. Increased duck activity was an important predictor of increased FCB in coastal ponds. Terrestrial animals like deer and raccoon, although abundant, were not significant in our model. Various land cover types, rainfall, tide, solar irradiation, air temperature, and season parameters, in combination with duck activity, were significant predictors of increased FCB. It appears that tidal ponds allow for settling of bacteria under most conditions. We propose that these models can be used to test different development styles and wildlife management techniques to reduce bacterial loading into downstream shellfish harvesting and contact recreation areas.

The coastal environment and human health: microbial indicators, pathogens, sentinels and reservoirs

Innovative research relating oceans and human health is advancing our understanding of disease-causing organisms in coastal ecosystems. Novel techniques are elucidating the loading, transport and fate of pathogens in coastal ecosystems, and identifying sources of contamination. This research is facilitating improved risk assessments for seafood consumers and those who use the oceans for recreation. A number of challenges still remain and define future directions of research and public policy. Sample processing and molecular detection techniques need to be advanced to allow rapid and specific identification of microbes of public health concern from complex environmental samples. Water quality standards need to be updated to more accurately reflect health risks and to provide managers with improved tools for decision-making. Greater discrimination of virulent versus harmless microbes is needed to identify environmental reservoirs of pathogens and factors leading to human infections. Investigations must include examination of microbial community dynamics that may be important from a human health perspective. Further research is needed to evaluate the ecology of non-enteric water-transmitted diseases. Sentinels should also be established and monitored, providing early warning of dangers to ecosystem health. Taken together, this effort will provide more reliable information about public health risks associated with beaches and seafood consumption, and how human activities can affect their exposure to disease-causing organisms from the oceans.

Long-term response of Torrey pine to coastal climate: precipitation, temperature, and fog

EXTRACT (SEE PDF FOR FULL ABSTRACT): Torrey pine (Pinus torreyana Parry ex Carr.) has one of the most limited geographical ranges and population size in the Pinus genus; it is present only on Santa Rosa Island and on the coast between San Diego and Del Mar, where our research was conducted. A 168-year chronology (1827-1994) was developed using 28 increment cores extracted from 15 living and 2 dead stranding trees at Torrey Pines State Reserve, San Diego, California. ... The spatial correlation with western North America winter and spring precipitation, as well as with published tree-ring chronologies, indicates a connection with the American Southwest. Global correlation maps with winter sea level pressure and sea surface temperature are consistent with the hypothesis that San Diego precipitation is affected by a southerly displaced North Pacific storm track and by warmer water farther south, both leading to higher transport of lower latitude moisture.

Salt and water balance in the Mundel Lake: a strongly choked coastal lagoon

The Mundel Lake is an extremely shallow lagoon on the west coast of Sri Lanka. It is connected to the Puttalam Lagoon through 15 km long Dutch Canal. Salinity measurements and daily sea level data were obtained fortnightly from January 1993 to March 1994 and they were used to quantify the salt and water budget along with precipitation, evaporation and freshwater runoff. Extreme fluctuations of salinity and sea level are striking features of the system. Salinity of the Mundel Lake and Dutch Canal varied from 5-46.5 and 6 61 ppt respectively while the sea level ranged from -0.25 to +1.2 m. Tidal variations were not seen in the lagoon due to its long narrow canal system. Salt budget showed that the deposition of salt on the lagoon bottom during periods of decreasing water level. During increasing water level, salt is dissolved again. Flow of water through the Dutch Canal between the Puttalam Lagoon and Mundel Lake is driven by the changes in sea level. These changes are mainly due to seasonal changes of net freshwater supply and, to a lesser degree, to seasonal changes in sea surface height. As the flow rates are small due to the long and narrow canal, the residence time ranges between two months and several months in the Mundel Lake, except during season of high freshwater supply. As the water exchange is weak, the Mundel Lake becomes hyper saline with strong fluctuations in salinity. This implies a stress to all lagoon dwelling aquatic organisms and also to aquaculture practices in the area.

Water quality parameters of coastal shrimp farms from southwest and southeast regions of Bangladesh

The impacts of shrimp farming on water quality and effluent loading of shrimp farms in southwest (Khulna) and southeast (Cox's Bazar) regions of Bangladesh was investigated during March-August and August-October season, respectively. Water salinity fluctuated from 3.0 to 15.0 ppt in the southwest, whereas it was between 2.5 to 20.0 ppt. in southeast region. Total ammonia nitrogen as recorded in most farms of Cox's Bazar region was higher (0. 1160.438 mg/L) than the recommended level of shrimp farming. Mean values of total ammonia nitrogen and total nitrogen at the outlet of shrimp farms were higher than those of inlet in both regions. Mean values of phosphate phosphorus and total phosphorus at outlet were lower than inlet except in harvest time of Penaeus monodon. Total suspended solids were deposited on the bottom of shrimp farms in both regions, which resulted in higher concentration in inlets than outlets in both regions.

Carmel Lagoon Water Quality and Steelhead Soundings: Fall 2007

ESSP 660 Advanced Watershed Science and Policy is a graduate class taught in the Master of Science in Coastal and Watershed Science & Policy program at California State University Monterey Bay. In 2007, the class was taught in four 4-week modules, each focusing on making a small contribution to a local watershed issue. This report describes the results of one of those 4-week modules – on Carmel Lagoon Water Quality and Ecology. The module was lead instructed by Fred Watson (CSUMB) and Kevan Urquhart (MPWMD). (Document contains 54 pages)

Ground water in the Hallandale area, Florida

The water problems confronting Hallandale are similar to those of other coastal cities of southeastern Florida which are undergoing rapid growth with tremendous increase in water demand. The highly permeable Biscayne aquifer underlying the Hallandale area is an excellent source of water; however, the permeable nature of the Biscayne aquifer would permit the intrusion of sea water, if fresh water levels were lowered excessively, as well as the infiltration of urban or industrial contaminants, from land surfaces and surface water bodies. This study is to provide the hydrologic data necessary for proper water resource development and planning in the Hallandale area. (40 page document)

Carmel River Lagoon Enhancement Project: Water Quality and Aquatic Wildlife Monitoring, 2005-6

In summer and fall 2004, the California Department of Parks and Recreation (DPR) initiated the Carmel River Lagoon Enhancement Project. The project involved excavation of a dry remnant Arm of the lagoon and adjacent disused farmland to form a significant new lagoon volume. The intention was to provide habitat, in particular, for two Federally threatened species: the California Red-Legged Frog, and the Steelhead Trout (South Central-Coastal California Evolutionary Significant Unit). DPR contracted with the Foundation of California State University Monterey Bay (Central Coast Watershed Studies Team, Watershed Institute) to monitor water quality and aquatic invertebrates in association with the enhancement, and to attempt to monitor steelhead using novel video techniques. The monitoring objective was to assess whether the enhancement was successful in providing habitat with good water quality, adequate invertebrate food for steelhead, and ultimately the presence of steelhead. (Document contains 102 pages)

The hydrography of Elkhorn Slough: a shallow California coastal Eebayment: Annual Report, Part 2, 1973

From October 1970 through February 1972, temperature, salinity, dissolved oxygen, secchi depth and five major nutrients were observed at approximately monthly intervals in Elkhorn Slough and Moss Landing Harbor. In addition, similar hourly observations were made during two tidal studies during the wet and dry seasons. From the salinity measurements during the summer, a salt balance for Elkhorn Slough is formulated and rnean eddy diffusion coefficients are determined. The diffusion nlodel applied to longitudinal phosphate distributions yielded a mean diffusive flux of 12 kg P04/day (140 pg-at/m^2/day) for the area above the mean tidal prism. Consistent differences, apparently due to differing regenerati on ra tes, were observed in the phosphate and nitrogen distributions. Bottom sediments are proposed as a possible source for phosphate and as a sink for fixed nitrogen. Dairy farms located along central Elkhorn Slough are apparently a source for reduced nitrogen. During summer, nitrogen was found to be the limiting nutrient for primary production in the upper slough. Tidal observations indicated fresh water of high nutrient concentration consistently entered the harbor from fresh water sources to the south. This source water had a probable phosphate concentration of 40 to 60 ug-at/l and seasonally varying P:N ratio of 1:16 and 1:5 during the winter and summer respectively. Net production and respiration rates are calculated from diurnal variations in dissolved oxygen levels observed in upper Elkhorn Slough. Changes in phosphate associated with the variations in oxygen was close to the accepted ratio of 1:276 by atoms. Document is 88 pages.

Shoreline erosion due to extreme storms and sea level rise

A summary is presented of research conducted on beach erosion associated with extreme storms and sea level rise. These results were developed by the author and graduate students under sponsorship of the University of Delaware Sea Grant Program. Various shoreline response problems of engineering interest are examined. The basis for the approach is a monotonic equilibrium profile of the form h = Ax2 /3 in which h is water depth at a distance x from the shoreline and A is a scale parameter depending primarily on sediment characteristics and secondarily on wave characteristics. This form is shown to be consistent with uniform wave energy dissipation per unit volume. The dependency of A on sediment size is quantified through laboratory and field data. Quasi-static beach response is examined to represent the effect of sea level rise. Cases considered include natural and seawalled profiles. To represent response to storms of realistic durations, a model is proposed in which the offshore transport is proportional to the "excess" energy dissipation per unit volume. The single rate constant in this model was evaluated based on large scale wave tank tests and confirmed with Hurricane Eloise pre- and post-storm surveys. It is shown that most hurricanes only cause 10% to 25% of the erosion potential associated with the peak storm tide and wave conditions. Additional applications include profile response employing a fairly realistic breaking model in which longshore bars are formed and long-term (500 years) Monte Carlo simulation including the contributions due to sea level rise and random storm occurrences. (PDF has 67 pages.)

Determination of direction of littoral transport along the north shore of Santa Rosa Island, Florida

The purpose of this study was to determine the actual direction of littoral transport along the north shore of Santa Rosa Island in the vicinity of Pensacola Beach, Florida. To accomplish this objective the sand tracer method was used for the study. Visual observations and instrument recordings of the environment factors were also made during the tracing operations. The investigation covered a time span from September 14, 1976 to March 12, 1977. (PDF contains 68 pages.)

Some considerations on coastal processes relevant to sea level rise

The effects of potential sea level rise on the shoreline and shore environment have been briefly examined by considering the interactions between sea level rise and relevant coastal processes. These interactions have been reviewed beginning with a discussion of the need to reanalyze previous estimates of eustatic sea level rise and compaction effects in water level measurement. This is followed by considerations on sea level effects on coastal and estuarine tidal ranges, storm surge and water level response, and interaction with natural and constructed shoreline features. The desirability to reevaluate the well known Bruun Rule for estimating shoreline recession has been noted. The mechanics of ground and surface water intrusion with reference to sea level rise are then reviewed. This is followed by sedimentary processes in the estuaries including wetland response. Finally comments are included on some probable effects of sea level rise on coastal ecosystems. These interactions are complex and lead to shoreline evolution (under a sea level rise) which is highly site-specific. Models which determine shoreline change on the basis of inundation of terrestrial topography without considering relevant coastal processes are likely to lead to erroneous shoreline scenarios, particularly where the shoreline is composed of erodible sedimentary material. With some exceptions, present day knowledge of shoreline response to hydrodynamic forcing is inadequate for long-term quantitative predictions. A series of interrelated basic and applied research issues must be addressed in the coming decades to determine shoreline response to sea level change with an acceptable degree of confidence. (PDF contains 189 pages.)