Global transcriptional responses of the toxic cyanobacterium, Microcystis aeruginosa, to nitrogen stress, phosphorus stress, and growth on organic matter

Whole transcriptome shotgun sequencing (RNA-seq) was used to assess the transcriptomic response of the toxic cyanobacterium Microcystis aeruginosa during growth with low levels of dissolved inorganic nitrogen (low N), low levels of dissolved inorganic phosphorus (low P), and in the presence of high levels of high molecular weight dissolved organic matter (HMWDOM). Under low N, one third of the genome was differentially expressed, with significant increases in transcripts observed among genes within the nir operon, urea transport genes (urtBCDE), and amino acid transporters while significant decreases in transcripts were observed in genes related to photosynthesis. There was also a significant decrease in the transcription of the microcystin synthetase gene set under low N and a significant decrease in microcystin content per Microcystis cell demonstrating that N supply influences cellular toxicity. Under low P, 27% of the genome was differentially expressed. The Pho regulon was induced leading to large increases in transcript levels of the alkaline phosphatase phoX, the Pst transport system (pstABC), and the sphX gene, and transcripts of multiple sulfate transporter were also significantly more abundant. While the transcriptional response to growth on HMWDOM was smaller (5–22% of genes differentially expressed), transcripts of multiple genes specifically associated with the transport and degradation of organic compounds were significantly more abundant within HMWDOM treatments and thus may be recruited by Microcystis to utilize these substrates. Collectively, these findings provide a comprehensive understanding of the nutritional physiology of this toxic, bloom-forming cyanobacterium and the role of N in controlling microcystin synthesis.

Distribution of persistent organic contaminants in canyons and on the continental shelf off central California

The National Status and Trends (NS&T) Program has conducted studies to determine the spatial extent and severity of chemical contamination and associated adverse biological effects in coastal bays and estuaries of the United States since 1991. Sediment contamination in U.S. coastal areas is a major environmental issue because of its potential toxic effects on biological resources and often, indirectly, on human health. Thus, characterizing and delineating areas of sediment contamination and toxicity and demonstrating their effect(s) on benthic living resources are therefore important goals of coastal resource management at NOAA. The National Centers for Coastal Ocean Science, and the Office of National Marine Sanctuaries, in cooperation with the U.S. Geological Survey (USGS), University of California Moss Landing Marine Lab (MLML), and the Monterey Bay Aquarium Research Institute (MBARI), conducted ecosystem monitoring and characterization studies within and between marine sanctuaries along the California coast in 2002 and 2004 on the NOAA RV McArthur. One of the objectives was to perform a systematic assessment of the chemical and physical habitats and associated biological communities in soft bottom habitats on the continental shelf and slope in the central California region. This report addresses the magnitude and extent of chemical contamination, and contaminant transport patterns in the region. Ongoing studies of the benthic community are in progress and will be reported in an integrated assessment of habitat quality and the parameters that govern natural resource distributions on the continental margin and in canyons in the region.

Coastal climate reflected in carbon-13/carbon-12 ratio of organic carbon in varved sediment from Santa Barbara basin

A 1844-1987 time-series of carbon stable isotope ratios from dated sedimentary total organic carbon from the center of the Santa Barbara basin is compared with historical climate and oceanographic records. Carbon derived from carbon-13-depleted phytoplankton and carbon-13-enriched kelp appear responsible for a large part of the isotopic variance in sedimentary total organic carbon. El Niño/Southern Oscillation events are recorded by the isotopic response of marine organic carbon in sediments.

Geochemical evidence for enhanced upwelling and organic productivity during the late Quaternary on the continental margin of northern California

EXTRACT (SEE PDF FOR FULL ABSTRACT): Laminated sediments are preserved in upper Pleistocene sections of cores collected on the continental slope at water depths within the present oxygen-minimum zone from at least as far north as the Klamath River and as far south as Point Sur. Comparison of sediment components in the laminae with those delivered to sediment traps as pelagic marine "snow" show the dark/light lamination couplets are indeed annual (varves). ... The presence of carbon-, sulfur-, and metal-rich sediments, as well as lack of bioturbation, all support the theory that the oxygen-minimum zone in the northeastern Pacific Ocean was more intense - in fact, anoxic - during the late Pleistocene in response to greater coastal upwelling and higher organic productivity.

Toxicity of some organic biocides to exotic carp fingerlings Hypophthalmichthys molitrix (C and V)

A bioassay study was conducted using three organic pesticides to determine their comparative toxicity to fingerlings of Hypophthalmichthys molitrix. There was wide variation in the toxicity of different pesticides with 24 hr LC sub(50) values ranging from 0.000403 to 0.294 mg/l. Endosulfan appeared to be the most toxic, whereas BHC was the least.

Culture of Moina micrura on various organic waste products

Moina micrura, a cladoceran species, is considered to be one of the best live food organisms for rearing the young larval stages of fish and prawn. Considering the importance of this species in hatchery operations the present study was undertaken to record its fecundity and life span and to culture it using different locally available organic waste products. In indoor culture, a maximum production of 2600 ind/1 and a minimum of 1050 ind/1 were obtained when treated with gram + maize oilcake and "till" oilcake respectively. In outdoor culture, a highest production of 6000 ind/1 was achieved with "Alsi" and "till" oilcakes and a lowest density of 1050 ind/1 with coconut oilcake and raw cattle dung was obtained with an inoculation rate of 5 ind/1.

Organic carbon in the sediments of the lower reaches of Periar River

Sediments are indicators of the quality of water overlying them and hence, useful in the assessment of environmental pollution. Temporal and spatial variations in sediment characteristics and organic carbon content from 9 stations in the lower reaches of Periyar River an area in Cochin Backwater, India which is polluted from different sources were studied for one year during 1981. Variations in colour and texture of sediments were brought about by changes in the grain size and state of oxidation of organic matter. The colour of the sediment varied from greyish black at stations 1 and 2, brownish at station 3, black at stations 4 to 8 and reddish at station 9. Organic carbon and sediment texture showed a direct relationship at all stations except at station 9 where organic carbon content showed an irregular pattern. Overall range of organic carbon content was between 1.19 and 29.6 mg.g super(-1). The mean organic carbon of the stations ranged between 6.8 mg.g super(-1) (station 5) and 20.8 mg.g super(-1) (station 9). On the whole temporal variations were considerable with high values at station 9 and low values at station 5. Fluctuations were more at stations 6, 7 and 8.

Effects of organic manuring (chicken droppings) on growth of Labeo rohita Ham. spawn

An experiment was conducted in six nursery ponds to determine the effect of different doses of organic fertilizer (chicken droppings) on growth and survival of Labeo rohita spawn. Ponds were stocked with four-days old L. rohita spawn at a density of 25 g/decimal and reared for 25 days. Three doses of organic fertilizer viz. 20kg, 10 kg and 5kg per decimal were tried in treatments Tp T2 and T3 respectively with two replication each. Fry were fed twice a day with a mixture of fine mustard oil cake and rice bran at the ratio of 1:1. The highest growth (6.33 em and 3.33 g) and survival rate (72.30%) were observed for the treatment T2. Physico-chemical and biological parameters were found within the productive range for all the treatments.

Laboratory culture of Moina with organic ana inorganic fertilizers

An experiment was conducted in the laboratory condition to determine the effect of organic (poultry drop, cow dung and mustard oil cake) and inorganic fertilizer (urea) on production, reproduction rate and maturation time of Moina species. Production rate was also determined in both aerated and non-aerated system in plastic containers with carrying capacity of 2.5-liter each. Total production was significantly higher in both aerated (2475 individuals/2.5 l water) and non-aerated (3253 individuals/2.5 l water) containers using poultry manure compared to other fertilizers. Moreover, the reproduction rate and maturation time in poultry drops showed distinct efficacy in Moina species. Reproduction rate of 11 individuals was the maximal while lowest maturation time was found 78 hours. Reproduction and maturation were induced surprisingly in test tube where the aeration system was absent.

Evaluation of organoleptic qualities of fish grown in ponds treated with different organic manures

Catla, rohu, silver carp and common carp raised employing different organic manures were subjected to organoleptic evaluation, both in raw and cooked form. The combination treatment of poultry manure and silkworm faecal matter had positive effect on colour and glossiness of skin and colour of flesh in the case of common carp. Though no significant difference was observed in the overall quality, odour of flesh and texture of meat of rohu were found to be better in sewage treated and poultry manure treated ponds respectively. From the results, it can be discerned that treated sewage has no adverse effect on the acceptable qualities of the carps studied.

Selective release of fatty acids during lipid hydrolysis in frozen-stored milk fish (Chanos chanos)

Lipid hydrolysis and the nature of fatty acids lost as a result of lipid hydrolysis in milk fish (Chanos chanos) during frozen storage at -20°C is discussed in this paper. There was a preferential loss of saturated acids during the first three weeks of storage. This was followed by loss of polyunsaturated acids during the next seven weeks. Sharp decrease in the levels of monounsaturated acids was observed from the 10th week of frozen storage. These observations are due to the preferential hydrolysis of phospholipids with relatively high proportion of saturated acids during the first three weeks, followed by the hydrolysis of phospholipids with high proportions of polyunsaturated fatty acids from the 3rd to the 10th week, and finally, predominant hydrolysis of neutral lipids from the 10th week onwards. Storage of fish in the ice prior to freezing was found to accelerate lipid hydrolysis, especially that of neutral lipids, during frozen storage.

Organic pollution in culture water resulting from excess feed and metabolite buildup

Penaeus monodon postlarvae were subjected to increasing feed concentrations and their growth and survival rates were recorded. Measurements were made of dissolved organic matter, and ammonia and nitrite-nitrogen concentrations. Survival was highest at the lowest feeding level and decreased as feed concentration increased. It is concluded that although organic matter enriches the food supply for P. monodon postlarvae, at higher concentration levels it can pollute the culture water, which in turn leads to mass mortality of the postlarvae. Secondly, the survival rate of P. monodon postlarvae is directly related to dissolved organic matter concentration, oxygen tension, and ammonia-nitrogen concentrations in the culture water. Even at sublethal levels these adverse environmental conditions decrease the survival rate.

Trace metal (Cu, Zn, Pb, Cr and Cd) concentrations of three subfractions of organic matter from Lake Mariut sediments, Egypt

Trace elements associated with organic subfractions (humic, fulvic, and non-humic substances) were identified for seven core sediments from Lake Mariut, Egypt. Results indicated that the amounts of trace metals in humic acid and non-humic substances decreased in the following order: Zn>Cu>Pb>Cr>Cd, while in fulvic acid the order the order was Cu>Zn>Pb>Cr>Cd. There is a higher contribution of Zn, Pb, Cu and Cr in humic acid compared to fulvic acid in most samples. Slight changes in the amounts of cadmium bounded with humic and fulvic acids was also found.

A review of the distribution of organic compounds in freshwater lakes and rivers

The paper reviews the distribution of organic compounds in freshwater lakes and rivers. The study of dissolved organic matter in natural lakes and rivers is of importance for a variety of reasons. The organic matter may serve in part or whole as an energy source for organisms living in the aquatic environment, or it may supply them with materials essential for their nutrition.