Molecular methods for the genetic identification of salmonid prey from Pacific harbor seal (Phoca vitulina richardsi) scat

Twenty-six stocks of Pacific salmon and trout (Oncorhynchus spp.), representing evolutionary significant units (ESU), are listed as threatened or endangered under the Endangered Species Act (ESA) and six more stocks are currently being evaluated for listing. The ecological and economic consequences of these listings are large; therefore considerable effort has been made to understand and respond to these declining populations. Until recently, Pacific harbor seals (Phoca vitulina richardsi) on the west coast increased an average of 5% to 7% per year as a result of the Marine Mammal Protection Act of 1972 (Brown and Kohlman2). Pacific salmon are seasonally important prey for harbor seals (Roffe and Mate, 1984; Olesiuk, 1993); therefore quantifying and understanding the interaction between these two protected species is important for Morphobiologically sound management strategies. Because some Pacific salmonid species in a given area may be threatened or endangered, while others are relatively abundant, it is important to distinguish the species of salmonid upon which the harbor seals are preying. This study takes the first step in understanding these interactions by using molecular genetic tools for species-level identification of salmonid skeletal remains recovered from Pacific harbor seal scats.

Distribution and abundance of humpback whales (Megaptera novaeangliae) and other marine mammals off the northern Washington coast

We examined the summer distribution of marine mammals off the northern Washington coast based on six ship transect surveys conducted between 1995 and 2002, primarily from the NOAA ship McArthur. Additionally, small boat surveys were conducted in the same region between 1989 and 2002 to gather photographic identification data on humpback whales (Megaptera novaeangliae) and killer whales (Orcinus orca) to examine movements and population structure. In the six years of ship survey effort, 706 sightings of 15 marine mammal species were made. Humpback whales were the most common large cetacean species and were seen every year and a total of 232 sightings of 402 animals were recorded during ship surveys. Highest numbers were observed in 2002, when there were 79 sightings of 139 whales. Line-transect estimates for humpback whales indicated that about 100 humpback whales inhabited these waters each year between 1995 and 2000; in 2002, however, the estimate was 562 (CV= 0.21) whales. A total of 191 unique individuals were identified photographically and mark recapture estimates also indicated that the number of animals increased from under 100 to over 200 from 1995 to 2002. There was only limited interchange of humpback whales between this area and feeding areas off Oregon and California. Killer whales were also seen on every ship survey and represented all known ecotypes of the Pacific Northwest, including southern and northern residents, transients, and offshore-type killer whales. Dall’s porpoise (Phocoenoides dalli) were the most frequently sighted small cetacean; abundance was estimated at 181−291 individuals, except for 2002 when we observed dramatically higher numbers (876, CV= 0.30). Northern fur seals (Callorhinus ursinus) and elephant seals (Mirounga angustirostris) were the most common pinnipeds observed. There were clear habitat differences related to distance offshore and water depth for different species.

The relative value of different estuarine nursery areas in North Carolina for transient juvenile marine fishes

Offshore winter-spawned fishes dominate the nekton of south-eastern United States estuaries. Their juveniles reside for several months in shallow, soft bottom estuarine creeks and bays called primary nursery areas. Despite similarity in many nursery characteristics, there is, between and within species, variability in the occupation of these habitats. Whether all occupied habitats are equally valuable to individuals of the same species or whether most recruiting juveniles end up in the best habitats is not known. If nursery quality varies, then factors controlling variation in pre-settlement fish distribution are important to year-class success. If nursery areas have similar values, interannual variation in distribution across nursery creeks should have less effect on population sizes or production. I used early nursery period age-specific growth and mortality rates of spot (Leiostomus xanthurus) and Atlantic croaker (Micropogonias undulatus)—two dominant estuarine fishes—to assess relative habitat quality across a wide variety of nursery conditions, assuming that fish growth and mortality rates were direct reflections of overall physical and biological conditions in the nurseries. I tested the hypothesis that habitat quality varies for these fishes by comparing growth and mortality rates and distribution patterns across a wide range of typical nursery habitats at extreme ends of two systems. Juvenile spot and Atlantic croaker were collected from 10 creeks in the Cape Fear River estuary and from 18 creeks in the Pamlico Sound system, North Carolina, during the 1987 recruitment season (mid-March–mid-June). Sampled creeks were similar in size, depth, and substrates but varied in salinities, tidal regimes, and distances from inlets. Spot was widely distributed among all the estuarine creeks, but was least abundant in the creeks in middle reaches of both systems. Atlantic croaker occurred in the greatest abundance in oligohaline creeks of both systems. Instantaneous growth rates derived from daily otolith ages were generally similar for all creeks and for both species, except that spot exhibited a short-term growth depression in the upriver Pamlico system creeks—perhaps the result of the long migration distance of this species to this area. Spot and Atlantic croaker from upriver oligohaline creeks exhibited lower mortality rates than fish from downstream polyhaline creeks. These results indicated that even though growth was similar at the ends of the estuaries, the upstream habitats provided conditions that may optimize fitness through improved survival.

Abundance of horseshoe crabs (Limulus polyphemus) in the Delaware Bay area

In recent years, increasing commercial landings of horseshoe crabs (Limulus polyphemus) along the Atlantic coast of the United States have raised concerns that the present resource is in decline and insufficient to support the needs of its user groups. These concerns have led the Atlantic States Marine Fisheries Commission (ASMFC) to implement a fishery management plan to regulate the harvest (ASMFC1). In order to properly manage any species, specific management goals and objectives must be established, and these goals depend on the resource users involved (Quinn and Deriso, 1999). Horseshoe crabs present a distinct resource management challenge because they are important to a diverse set of users (Berkson and Shuster, 1999).

Movements of bocaccio (Sebastes paucispinis) and greenspotted (S. chlorostictus) rockfishes in a Monterey submarine canyon: implications for the design of marine reserves

In August and September of 1997 and 1998, we used SCUBA techniques to surgically implant Vemco V16 series acoustic transmitters in 6 greenspotted rockfish (Sebastes chlorostictus) and 16 bocaccio (S. paucispinis) on the flank of Soquel Canyon in Monterey Bay, California. Fish were captured at depths of 100–200 m and reeled up to a depth of approximately 20 m, where a team of SCUBA divers anesthetized and surgically implanted acoustic transmitters in them. Tagged fish were released on the seafloor at the location of catch. An array of recording receivers on the seafloor enabled the tracking of horizontal and vertical fish movements for a three-month period. Greenspotted rockfish tagged in 1997 exhibited almost no vertical movement and showed limited horizontal movement. Two of these tagged fish spent more than 90% of the time in a 0.58-km2 area. Three other tagged greenspotted rockfish spent more than 60% of the time in a 1.6-km2 area but displayed frequent horizontal movements of at least 3 km. Bocaccio exhibited somewhat greater movements. Of the 16 bocaccio tagged in 1998, 10 spent less than 10% of the time in the approximately 12-km2 study area. One fish stayed in the study area for about 50% of the study time. Signals from the remaining 5 fish were recorded in the study area the entire time. Bocaccio frequently moved vertically 10–20 m and occasionally displayed vertical movements of 100 m or greater.

A case study of the disappearance of Arius tenuispinis (marine catfish) in the vicinity of Visakhapatnam due to mechanised fishing

Visakhapatnam is on the eastern sea board of India (17 degree 40' N and 83 degree 15' E) having a continental shelf of 45 km width which is provided with a polychaete rich, silty clay sea floor to a distance of 15 km and beyond, from the shore. Repeated trawling by a large number of trawlers over an area of 900 sq.km (30 x 30) resulted in the hardening of the substratum to the extent of making it uninhabitable to the polychaetes and polychaete feeding fish. The shoaling and strictly demersal marine catfish, Arius tenuispinis, which is a prolific polychaete feeder on the fishing grounds off Visakhapatnam, has been on the decline since 1979. The catch rate of fish dropped from 9.7 kg/boat per day in 1979 to 2.6 kg by 1985-86. In the bottomset gillnets, the catch per net dwindled from 4.4 kg in 1973 to 0.04 kg by 1985-86. The species has virtually disappeared from the fishing grounds off Visakhapatnam and further north, as a results of the cumulative effect of overfishing with trawlnets and bottomset gillnets. It is further aggravated by the hardening of the sea floor on these grounds due to repeated trawling over a narrow zone.

Marine pollution in the Indian Ocean: problems, prospects and perspectives

Following a brief outline of the physiography of the Indian Ocean, an examination is made of the current situation regarding contamination of the environment. Prominent marine pollutants and the consequences of the marine disposal are discussed, considering in particular oil pollution, heavy metal pollution, agricultural wastes and domestic wastes. Research activities conducted in the area investigating the levels of marine pollution are detailed, and an evaluation made of future prospects concerning the monitoring and control of pollution.

Two most abundant species of Ulva and Enteromorpha from coast of Jeddah, Saudi Arabia

The present paper reports mass occurrence of two algal species Ulva grandis Saifullah and Nizamuddin and Enteromorpha intestinalis (Linnaeus) Link in a protected coastal area in Jeddah, heavily polluted with domestic sewage. They seem to prefer low salinity eutrophic waters for their maximum growth.

Some observations on the problem of marine timber destroying organisms of Indian coasts

In India the chief marine timber boring organisms are 2 species of Martesia, 28 species of shipworms, 4 species and a variety of Sphaeroma and 9 species of Limnoria besides bacteria and fungi. The occurrence, abundance and activity of the various species of borers show remarkable variations and fluctuations in the different harbours of India, each harbour or area having its own dominant set of species and an assemblage of less important forms. These species have their own characteristic preferences, life history and seasons of attachment and a scheme evolved for one locality may prove ineffective for another. Through a delicate and complex ecological adjustment the borers occurring in a locality have reached an interrelationship reducing interspecific and intraspecific competition. The seasons of settlement of the dominant borers in the different harbours of India are indicated. The need for a detailed biological enquiry is stressed.

An integrated approach to national marine resources development

A review is presented of the various marine resources and their potential, concerning fishing, aquaculture, transportation, pollution, hydrocarbons and solid minerals, renewable energy and ocean thermal energy conversion. Administrative problems confronting their rational management in Sri Lanka are examined, considering coastal area management and development, management issues, and alternatives.

Population dynamics of killifish Aphanius dispar (Ruppel) in Sandspit area off Karachi

Growth and mortality parameters of Aphanius dispar a cyprinoides generally observed in the catches of near shore area were estimated from the length frequency data collected from Sandspit area of Karachi, using LFSA. The von Bertalanffy growth parameters were estimated as Loo=71.73 mm & K=L35/yr for Male Aphanius dispar and Loo=70.66 & K=l.41 for female. Total Mortality coefficient (Z) was estimated using Length converted catch curve which is equal to 2.12/yr, for male and for female 2.19/yr. Natural mortality (M) was estimated by Pauly's empirical formula: M=l.64/yr (male) and 1.70/yr (female). The species also displayed two cohorts a year.

Status of the shore area from Tiengiang to Camau: causes of accumulation and erosion

The paper presents some results of the research programs which had been performed during 1996-1999 (“Studying of river-sea interaction in the mouth of Tien river” and KHCN.06.08). Based on these results the morphological schemes of the shore areas from Tiengiang to Camau were compiled; causes and mechanics of accumulation and erosion were also determined. These results may be used as scientific basis for forecasting the development of the shoreline, it will contribute to the management, protection and reasonable exploitation the shore areas.

Experiments with fibre-glass sheathing as a protection against marine wood-boring organisms

Wooden test panels of different species of wood sheathed with fibre-glass reinforced plastic were subjected to immersion tests along with corresponding controls in Cochin Port area and the effect of the protective coating studied.

Mercury toxicity in two intertidal tropical marine molluscs

Lethal and sub-lethal effects of mercury have been studied in Perna viridis and Modiolus carvalhoi. For P. viridis LC30 is 1.0 p.p.m. at 48 h and 0.23 p.p.m. at 96 h. Recorded LC50 values for M. carvalhoi are 0.5 p.p.m. and 0.19 p.p.m. at 48 h and 96 h respectively. The results document that these two species, although inhabiting the same area in the tidal belt, exhibit clear differences in mercury resistance. It is further shown that the duration of exposure affects mortality rates. In sub-lethal concentration, between 0.01 and 0.10 p.p.m. decrease in pedal-gland activity is conspicuous in P. viridis. At concentrations much below LC50 values (at 96 h), although some animals are alive, pedal-gland activity is totally suspended, supporting the assumption that shell closure ability plays a minor role in byssus thread production. In M. carvalhoi total cessation of pedal gland activity occurred at 0.09 p.p.m. of mercury.