Mycorrhizal preferences and fine spatial structure of the epiphytic orchid Epidendrum rhopalostele

• Premise of the study: The presence of compatible fungi is necessary for epiphytic orchid recruitment. Thus, identifying associated mycorrhizal fungi at the population level is essential for orchid conservation. Recruitment patterns may also be conditioned by factors such as seed dispersal range and specific environmental characteristics. • Methods: In a forest plot, all trees with a diameter at breast height >1 cm and all individuals of the epiphytic orchid Epidendrum rhopalostele were identified and mapped. Additionally, one flowering individual of E. rhopalostele per each host tree was randomly selected for root sampling and DNA extraction. • Key results: A total of 239 E. rhopalostele individuals were located in 25 of the 714 potential host trees. Light microscopy of sampled roots showed mycorrhizal fungi in 22 of the 25 sampled orchids. Phylogenetic analysis of ITS1-5.8S-ITS2 sequences yielded two Tulasnella clades. In four cases, plants were found to be associated with both clades. The difference between univariate and bivariate K functions was consistent with the random labeling null model at all spatial scales, indicating that trees hosting clades A and B of Tulasnella are not spatially segregated. The analysis of the inhomogenous K function showed that host trees are not clustered, suggesting no limitations to population-scale dispersal. χ2 analysis of contingency tables showed that E. rhopalostele is more frequent on dead trees than expected. • Conclusions: Epidendrum rhopalostele establishes mycorrhizal associations with at least two different Tulasnella species. The analysis of the distribution patterns of this orchid suggests a microsite preference for dead trees and no seed dispersal limitation.

Competition may explain the fine-scale spatial patterns and genetic structure of two co-occurring plant congeners

1. The spatial distribution of individual plants within a population and the population’s genetic structure are determined by several factors, like dispersal, reproduction mode or biotic interactions. The role of interspecific interactions in shaping the spatial genetic structure of plant populations remains largely unknown. 2. Species with a common evolutionary history are known to interact more closely with each other than unrelated species due to the greater number of traits they share. We hypothesize that plant interactions may shape the fine genetic structure of closely related congeners. 3. We used spatial statistics (georeferenced design) and molecular techniques (ISSR markers) to understand how two closely related congeners, Thymus vulgaris (widespread species) and T. loscosii (narrow endemic) interact at the local scale. Specific cover, number of individuals of both study species and several community attributes were measured in a 10 × 10 m plot. 4. Both species showed similar levels of genetic variation, but differed in their spatial genetic structure. Thymus vulgaris showed spatial aggregation but no spatial genetic structure, while T. loscosii showed spatial genetic structure (positive genetic autocorrelation) at short distances. The spatial pattern of T. vulgaris’ cover showed significant dissociation with that of T. loscosii. The same was true between the spatial patterns of the cover of T. vulgaris and the abundance of T. loscosii and between the abundance of each species. Most importantly, we found a correlation between the genetic structure of T. loscosii and the abundance of T. vulgaris: T. loscosii plants were genetically more similar when they were surrounded by a similar number of T. vulgaris plants. 5. Synthesis. Our results reveal spatially complex genetic structures of both congeners at small spatial scales. The negative association among the spatial patterns of the two species and the genetic structure found for T. loscosii in relation to the abundance of T. vulgaris indicate that competition between the two species may account for the presence of adapted ecotypes of T. loscosii to the abundance of a competing congeneric species. This suggests that the presence and abundance of close congeners can influence the genetic spatial structure of plant species at fine scales.

La geoquímica de los sedimentos de llanuras de inundación como guía para la valoración ambiental en España

En la presente tesis se estudian los contenidos geoquímicos de los sedimentos de llanura de inundación en diversas cuencas fluviales seleccionadas con el objetivo de contribuir a un mejor conocimiento de sus condiciones medioambientales. En cada cuenca, se ha muestreado un perfil vertical de llanura de inundación, dividiéndolo en tramos que generalmente corresponden a diferentes episodios de inundación. Estos sedimentos se depositan durante los episodios de crecidas una vez que la corriente sobrepasa los límites del canal. Se caracterizan normalmente por tener un tamaño de grano fino y una estructura en capas horizontales que corresponden a los sucesivos episodios de inundación. Muestran dos ventajas principales con respecto a otros medios de muestreo en geoquímica como suelos o sedimentos de corriente: • Pueden almacenar sedimento antiguo así como actual, con lo que se puede estudiar la historia geoquímica de una zona específica en un mismo punto de muestreo (perfil vertical). • Los sedimentos de llanuras de inundación son capaces de caracterizar grandes áreas de drenaje. El origen de los sedimentos es más diverso que en el sedimento de corriente, debido a las mayores áreas de donde proceden las aguas de las avenidas. Las cuencas han sido seleccionadas según las actividades antropogénicas que en ellas se llevan a cabo, en concreto, actividades urbanas e industriales, minería y agricultura. Así mismo, se han estudiado, como referencia, dos cuencas donde no se espera encontrar ningún tipo de actividad contaminante. Una vez hecha la selección, los sedimentos aluviales de las cuencas se han estudiado cuidadosamente para asegurar que no existen depósitos de acreción lateral en el punto seleccionado. Posteriormente se ha procedido al muestreo del perfil vertical. Las muestras han sido analizadas mediante ICP-MS (ataque total) e INAA para conocer los contenidos totales de los elementos traza y mayoritarios. Los análisis de la fracción extraíble se han llevado a cabo mediante ICP-MS (ataque con agua regia). Así mismo, algunas muestras seleccionadas han sido sometidas a una extracción secuencial para un estudio más detallado. La presencia de materia orgánica ha sido estimada mediante el análisis de Carbono Orgánico Total (TOC). Finalmente, se ha llevado a cabo un análisis de isótopos de Pb en muestras escogidas en los perfiles, con el objetivo de hacer una evaluación ambiental. Los contenidos metálicos aumentan hacia la superficie en algunos de los perfiles, mientras en otros muestran una distribución muy constante exceptuando algún nivel específico con un aumento de los contenidos de la mayoría de los metales. Ha sido posible determinar la influencia de las actividades antropogénicas en algunos de los perfiles. Aquellos que pertenecen a cuencas mineras, urbanas o industrializadas muestran generalmente altos contenidos en elementos metálicos. Es el caso de los perfiles muestreados en los ríos Odiel y Tinto, Besaya, Besós y Manzanares. Algunos de estos perfiles pueden incluso correlacionarse con periodos de tiempo en los que ha tenido lugar una actividad antropogénica más intensa. Los perfiles que mejor se correlacionan con la actividad antropogénica de la cuenca son el perfil de Rivas en el río Manzanares (Madrid), que refleja un crecimiento de la contaminación producida por las actividades urbana e industrial en las últimas décadas, y el río Tinto, que muestra un crecimiento llamativo de los contenidos en su mayoría metálicos que puede estar relacionado con el incremento de la actividad minera que tuvo lugar hace aproximadamente 125 años. El análisis de los isótopos de Pb ha resultado ser una herramienta útil en la evaluación ambiental de estos sedimentos. Con este estudio y mediante la comparación con fuentes naturales y antropogénicas, ha sido posible diferenciar las muestras afectadas por diferentes fuentes de plomo, así como detectar las más afectadas antropogénicamente. ABSTRACT The geochemical composition of overbank sediments of some selected river basins is studied in this thesis in order to contribute to a better knowledge of the environmental conditions surrounding them. In each basin a vertical overbank profile has been sampled, dividing it into stretches that usually correspond to different flood events. The overbank sediments are those deposited during a flood event once the flow spills over the channel banks. They are usually characterized by a very fine grain size and a structure of horizontal layers, which correspond to successive flood events. These sediments show two main advantages regarding other sampling media in geochemistry, like soils or stream sediments: • They can store sediment deposited in the past as well as in current times, so that the history of a specific location can be studied at the very same point (vertical profile). • The overbank sediments are able to characterize a large drainage area. The origin of the sediment is wider than in the stream sediments due to the larger areas where the flood water comes from. The basins have been selected depending on the anthropogenic activities developed in them, namely, urban and industrial activities, mining activities and agricultural activities. As well, two pristine basins have been studied as a reference. Afterwards, the alluvial sediments in the basins have been carefully studied in order to sample a vertical profile and make sure that lateral accretion materials are not present in the profile. The samples have been analysed by ICP-MS (total digestion) and INAA to know the total contents of trace and major elements. Analysis of the mobile fraction has been carried out by ICP-MS (aqua regia); as well some of the samples have been subjected to sequential extraction for a more detailed study. The presence of organic matter has been estimated by the analysis of the Total Organic Carbon (TOC). Finally, a lead isotope analysis of some of the samples in the profiles was carried out in order to make an environmental assessment. Metal contents grow towards the surface in some of the profiles, while others show a very steady distribution, except for some of them with a growth of most of the metals in a specific level. XI It has been possible to determine the influence of the anthropogenic activities in some of the profiles. The ones that belong to mining and urban or industrialized basins show generally high contents of metal elements. This is the case of the profiles sampled in the Odiel and Tinto Rivers, the Besaya River, the Besós River and the Manzanares River. Some of these profiles can even correlate with the periods of time when a more intense activity in their respective basins has taken place. The profiles which best correlate with the anthropogenic activity are the Rivas profile in the Manzanares River, which reflects a growth of the pollution produced by urban and industrial activities in the city of Madrid in the last decades and the Tinto profile, which shows a very dramatic growth of the elemental contents (mostly metals) which can be related to the increase of the mining activities that took place in the last 125 years. The analysis of lead isotopes has turned out to be a powerful tool in the environmental assessment in this type of sediments. With this study and through the comparison with natural and anthropogenic sources, it has been possible to determine samples affected by different sources of lead and to detect the most anthropogenicaly affected ones.

Fine spatial pattern of an epiphytic lichen species is affected by habitat conditions in two forest types in the Iberian Mediterranean region

Persistence and abundance of species is determined by habitat availability and the ability to disperse and colonize habitats at contrasting spatial scales. Favourable habitat fragments are also heterogeneous in quality, providing differing opportunities for establishment and affecting the population dynamics of a species. Based on these principles, we suggest that the presence and abundance of epiphytes may reflect their dispersal ability, which is primarily determined by the spatial structure of host trees, but also by host quality. To our knowledge there has been no explicit test of the importance of host tree spatial pattern for epiphytes in Mediterranean forests. We hypothesized that performance and host occupancy in a favourable habitat depend on the spatial pattern of host trees, because this pattern affects the dispersal ability of each epiphyte and it also determines the availability of suitable sites for establishment. We tested this hypothesis using new point pattern analysis tools and generalized linear mixed models to investigate the spatial distribution and performance of the epiphytic lichen Lobaria pulmonaria, which inhabits two types of host trees (beeches and Iberian oaks). We tested the effects on L. pulmonaria distribution of tree size, spatial configuration, and host tree identity. We built a model including tree size, stand structure, and several neighbourhood predictors to understand the effect of host tree on L. pulmonaria. We also investigated the relative importance of spatial patterning on the presence and abundance of the species, independently of the host tree configuration. L. pulmonaria distribution was highly dependent on habitat quality for successful establishment, i.e., tree species identity, tree diameter, and several forest stand structure surrogates. For beech trees, tree diameter was the main factor influencing presence and cover of the lichen, although larger lichen-colonized trees were located close to focal trees, i.e., young trees. However, oak diameter was not an important factor, suggesting that bark roughness at all diameters favoured lichen establishment. Our results indicate that L. pulmonaria dispersal is not spatially restricted, but it is dependent on habitat quality. Furthermore, new spatial analysis tools suggested that L. pulmonaria cover exhibits a distinct pattern, although the spatial pattern of tree position and size was random.

Effect of fibers and whole grain content on quality attributes

Incorporation of fiber in cereals may lead to quality issues, thus decreasing consumer acceptance. This is partially due to deterioration of the microstructure, one of the primary quality attributes of cereals. The objective of this study was to better understand the mechanisms by which dietary fibers affect the quality of cereal products during extrusioncooking. The study quantified the effect of amount and type of fiber and whole grain on (i) texture, (ii) structure, and (iii) rehydration properties of extruded cereals. New innovative methods were applied and combined with traditional techniques to characterize both the structure and the rehydration properties. Extruded cereals were produced using a starch-based recipe (whole and wheat flours) and two sources of fibers (oat bran concentrate and wheat bran). The oat and wheat bran levels used in this study were 0, 10, and 20%. The different mixtures were extruded in a pilot twinscrew extruder BC21 (Clextral) and then sugar coated after drying. Mechanical properties of extruded cereals were investigated by compression test. The cellular structure was observed by X-ray tomography. The quality of coating (thickness, homogeneity) was analyzed by optical coherence tomography. The rehydration properties of such cereals in milk were evaluated by magnetic resonance imaging and optical coherence tomography. This work revealed that structure assessment of extruded cereals may lead to a better understanding of the effect of fiber addition on texture and rehydration properties. The application of innovative methods, such as optical coherence tomography and magnetic resonance imaging, was found to be useful to quantify the structural properties.

Fine spatial pattern of an epiphytic lichen species is affected by habitat conditions in two forest types in the Iberian Mediterranean region

Persistence and abundance of species is determined by habitat availability and the ability to disperse and colonize habitats at contrasting spatial scales. Favourable habitat fragments are also heterogeneous in quality, providing differing opportunities for establishment and affecting the population dynamics of a species. Based on these principles, we suggest that the presence and abundance of epiphytes may reflect their dispersal ability, which is primarily determined by the spatial structure of host trees, but also by host quality. To our knowledge there has been no explicit test of the importance of host tree spatial pattern for epiphytes in Mediterranean forests. We hypothesized that performance and host occupancy in a favourable habitat depend on the spatial pattern of host trees, because this pattern affects the dispersal ability of each epiphyte and it also determines the availability of suitable sites for establishment. We tested this hypothesis using new point pattern analysis tools and generalized linear mixed models to investigate the spatial distribution and performance of the epiphytic lichen Lobaria pulmonaria, which inhabits two types of host trees (beeches and Iberian oaks). We tested the effects on L. pulmonaria distribution of tree size, spatial configuration, and host tree identity. We built a model including tree size, stand structure, and several neighbourhood predictors to understand the effect of host tree on L. pulmonaria. We also investigated the relative importance of spatial patterning on the presence and abundance of the species, independently of the host tree configuration. L. pulmonaria distribution was highly dependent on habitat quality for successful establishment, i.e., tree species identity, tree diameter, and several forest stand structure surrogates. For beech trees, tree diameter was the main factor influencing presence and cover of the lichen, although larger lichen-colonized trees were located close to focal trees, i.e., young trees. However, oak diameter was not an important factor, suggesting that bark roughness at all diameters favoured lichen establishment. Our results indicate that L. pulmonaria dispersal is not spatially restricted, but it is dependent on habitat quality. Furthermore, new spatial analysis tools suggested that L. pulmonaria cover exhibits a distinct pattern, although the spatial pattern of tree position and size was random.