Combining statistical and semantic approaches to the translation of ontologies and taxonomies

Ontologies and taxonomies are widely used to organize concepts providing the basis for activities such as indexing, and as background knowledge for NLP tasks. As such, translation of these resources would prove useful to adapt these systems to new languages. However, we show that the nature of these resources is significantly different from the "free-text" paradigm used to train most statistical machine translation systems. In particular, we see significant differences in the linguistic nature of these resources and such resources have rich additional semantics. We demonstrate that as a result of these linguistic differences, standard SMT methods, in particular evaluation metrics, can produce poor performance. We then look to the task of leveraging these semantics for translation, which we approach in three ways: by adapting the translation system to the domain of the resource; by examining if semantics can help to predict the syntactic structure used in translation; and by evaluating if we can use existing translated taxonomies to disambiguate translations. We present some early results from these experiments, which shed light on the degree of success we may have with each approach

e-MIR2: a public online inventory of medical informatics resources

Background. Over the last years, the number of available informatics resources in medicine has grown exponentially. While specific inventories of such resources have already begun to be developed for Bioinformatics (BI), comparable inventories are as yet not available for Medical Informatics (MI) field, so that locating and accessing them currently remains a hard and time-consuming task. Description. We have created a repository of MI resources from the scientific literature, providing free access to its contents through a web-based service. Relevant information describing the resources is automatically extracted from manuscripts published in top-ranked MI journals. We used a pattern matching approach to detect the resources? names and their main features. Detected resources are classified according to three different criteria: functionality, resource type and domain. To facilitate these tasks, we have built three different taxonomies by following a novel approach based on folksonomies and social tagging. We adopted the terminology most frequently used by MI researchers in their publications to create the concepts and hierarchical relationships belonging to the taxonomies. The classification algorithm identifies the categories associated to resources and annotates them accordingly. The database is then populated with this data after manual curation and validation. Conclusions. We have created an online repository of MI resources to assist researchers in locating and accessing the most suitable resources to perform specific tasks. The database contained 282 resources at the time of writing. We are continuing to expand the number of available resources by taking into account further publications as well as suggestions from users and resource developers.

Nanoinformatics: a new area of research in nanomedicine

Over a decade ago, nanotechnologists began research on applications of nanomaterials for medicine. This research has revealed a wide range of different challenges, as well as many opportunities. Some of these challenges are strongly related to informatics issues, dealing, for instance, with the management and integration of heterogeneous information, defining nomenclatures, taxonomies and classifications for various types of nanomaterials, and research on new modeling and simulation techniques for nanoparticles. Nanoinformatics has recently emerged in the USA and Europe to address these issues. In this paper, we present a review of nanoinformatics, describing its origins, the problems it addresses, areas of interest, and examples of current research initiatives and informatics resources. We suggest that nanoinformatics could accelerate research and development in nanomedicine, as has occurred in the past in other fields. For instance, biomedical informatics served as a fundamental catalyst for the Human Genome Project, and other genomic and ?omics projects, as well as the translational efforts that link resulting molecular-level research to clinical problems and findings.

The Innovation Sources in Software Engineering: A Systematic Literature Review

During the last century many researches on the business, marketing and technology fields have developed the innovation research line and large amount of knowledge can be found in the literature. Currently, the importance of systematic and openness approaches to manage the available innovation sources is well established in many knowledge fields. Also in the software engineering sector, where the organizations need to absorb and to exploit as much innovative ideas as possible to get success in the current competitive environment. This Master Thesis presents an study related with the innovation sources in the software engineering eld. The main research goals of this work are the identication and the relevance assessment of the available innovation sources and the understanding of the trends on the innovation sources usage. Firstly, a general review of the literature have been conducted in order to define the research area and to identify research gaps. Secondly, the Systematic Literature Review (SLR) has been proposed as the research method in this work to report reliable conclusions collecting systematically quality evidences about the innovation sources in software engineering field. This contribution provides resources, built-on empirical studies included in the SLR, to support a systematic identication and an adequate exploitation of the innovation sources most suitable in the software engineering field. Several artefacts such as lists, taxonomies and relevance assessments of the innovation sources most suitable for software engineering have been built, and their usage trends in the last decades and their particularities on some countries and knowledge fields, especially on the software engineering, have been researched. This work can facilitate to researchers, managers and practitioners of innovative software organizations the systematization of critical activities on innovation processes like the identication and exploitation of the most suitable opportunities. Innovation researchers can use the results of this work to conduct research studies involving the innovation sources research area. Whereas, organization managers and software practitioners can use the provided outcomes in a systematic way to improve their innovation capability, increasing consequently the value creation in the processes that they run to provide products and services useful to their environment. In summary, this Master Thesis research the innovation sources in the software engineering field, providing useful resources to support an effective innovation sources management. Moreover, several aspects should be deeply study to increase the accuracy of the presented results and to obtain more resources built-on empirical knowledge. It can be supported by the INno- vation SOurces MAnagement (InSoMa) framework, which is introduced in this work in order to encourage openness and systematic approaches to identify and to exploit the innovation sources in the software engineering field.

Knowledge representation tool for cognitiveprocesses modeling

In the last decades, neuropsychological theories tend to consider cognitive functions as a result of the whole brainwork and not as individual local areas of its cortex. Studies based on neuroimaging techniques have increased in the last years, promoting an exponential growth of the body of knowledge about relations between cognitive functions and brain structures [1]. However, so fast evolution make complicated to integrate them in verifiable theories and, even more, translated in to cognitive rehabilitation. The aim of this research work is to develop a cognitive process-modeling tool. The purpose of this system is, in the first term, to represent multidimensional data, from structural and functional connectivity, neuroimaging, data from lesion studies and derived data from clinical intervention [2][3]. This will allow to identify consolidated knowledge, hypothesis, experimental designs, new data from ongoing studies and emerging results from clinical interventions. In the second term, we pursuit to use Artificial Intelligence to assist in decision making allowing to advance towards evidence based and personalized treatments in cognitive rehabilitation. This work presents the knowledge base design of the knowledge representation tool. It is compound of two different taxonomies (structure and function) and a set of tags linking both taxonomies at different levels of structural and functional organization. The remainder of the abstract is organized as follows: Section 2 presents the web application used for gathering necessary information for generating the knowledge base, Section 3 describes knowledge base structure and finally Section 4 expounds reached conclusions.

Arquitecturas en árboles: atenciones contemporáneas, 1990-2010

La tesis abre su mirada hacia uno de los discursos más interesantes, a mi juicio, de la cultura arquitectónica contemporánea: el de la relación establecida entre el ser humano y la naturaleza. Algunos autores creen que esta relación se establece como simbiosis, como un organismo arquitectónico en correlación y analogía con su entorno y emplazamiento. Otros ven una correspodencia en la que la arquitectura se ubica como un artefacto que ”dialoga” y que no imita a la naturaleza. Las arquitecturas en árboles se desarrollan en estos dos sentidos. El panorama de estas arquitecturas está abierto, es incipiente, laberíntico, poliédrico y caleidoscópico. Metodológicamente ha sido necesario acotarlo y el período de estudio elegido ha sido el más fructífero de la historia y cultura de las estructuras en los árboles. En los últimos veinticinco años, éstas han vuelto a generar atracción por el auge de la sensibilización medioambiental. También se ha producido un incremento de las culturas del ocio (con acento en el deseo por encima de la utilidad o la necesidad) y de la introspección (en busca de un retiro espiritual alejado de la cultura de la globalización). Hacia 1990 se producen acontecimientos relevantes que son los precursores de este desarrollo: la aparición en 1988 del libro “Treehouses” de Aikman abre de manera desenfadada esta cultura arquitectónica. Para acotar el final del período de investigación se ha dejado un margen desde 2010 a 2015 por prudencia investigadora. Los objetivos de la tesis se han centrado: Primero, en encuadrar el concepto de “arquitecturas en árboles”; Segundo, en descubrir los motivos, ideas que inspiraron las arquitecturas en árboles anteriores al período de estudio y su posible repercusión en sus descendientes contemporáneas. Principalmente son atenciones ideológicas, culturales, sociales, filosóficas, simbólicas, míticos y funcionales. Tercero, en confeccionar una taxonomía de las intenciones, consideraciones y desencadenantes básicos que pudieran establecerse como claves del proceso imaginario, conceptivo y constructivo de la actuales arquitecturas en árboles (1990-2010). Para ello nos hemos puesto bajo el paraguas metodológico del concepto de atención, defendido por Quaroni, Ferrater, Broadbent y Seguí. Hemos planteado una reflexión sobre el tipo de atenciones y su idoneaidad llegando a distinguir las siguientes atenciones básicas: 1) Las atenciones históricas (del pasado): englobando bajo esta denominación el entramado rizomático de atenciones sociales, culturales, antropológicas, filosóficas, míticas y simbólicas. Estas atenciones permiten al lector posicionarse de manera efectiva en este amplio campo, para entrar con posterioridad en el cuerpo de la investigación. Posteriormente descubriremos que éstas se convierten en atenciones crítico-modales para las arquitecturas contemporáneas. 2) Las atenciones funcionales contemporáneas: en las que estableceremos una conexión multiple con otras atenciones ergonómicas, organizativas, tipológicas y medioambientales básicas que están claramente influenciadas por aquellas. Quedan establecidas en una taxonomía inédita de treinta ocho subcategorías que nos alejan del estereotipo de la casa en el árbol como lugar de defensa y protección, o como espacio lúdico-infantil 3) Las atenciones constructivas contemporáneas: que las relacionaremos con las biológicas, estructurales-portantes, tipológico-constructivas, medioambientales básicas (de los materiales), y que son tenidas en cuenta por los contructores. Asimismo, se revelan los sistemas de construcción de arquitecturas portantes y autoportantes (artificiales-naturales) y las 100% naturales. Además, se decubren los seis mecanismos estructurales de sujeción de habitáculos en árboles más utilizados, así como cuáles son los árboles idóneos para soportar estas estructuras. 4) Las atenciones formales contemporáneas: con sus conexiones hacia las atenciones presenciales, espaciales organizativas y medioambientales básicas. Se establecen taxonomías sistemáticas formales simples y complejas (pragmática, icónica, analógica y canónica). Se estudian con profundidad la analogía con otras realidades y la estructuración geométrica formal (canónica) por considerarlas las más relevantes. Se culmina la investigación con una reflexión sobre el conjunto rizomático de atenciones, disciplinas, nociones y conceptos inherentes al campo de las arquitecturas en árboles, ejemplificándolo con un ideograma. La última vista se fija sobre el arco temporal de estas arquitecturas reflejando las cincuenta más significativas por su mayor coherencia de competencia atencional, total o parcial. ABSTRACT This dissertation looks into one the most interesting discourses in contemporary architectural culture: the relationship between human beings and nature. Some scholars think of this relationship as a symbiosis, as an architectural organism armonically correlated with its environment and location. Others believe that a correspondence exists where architecture stands as an artifact ‘in dialogue’ with, and not as an imitation of, nature. Treehouses develop in both senses. The realm of these architectures is open, embryonic, labyrinthine, polyhedral and kaleidoscopic. It was necessary to methodologically delimit it. We chose for the study the most fruitful period in the history and culture of treehouses. During the last twenty-five years, the latter have exerted great appeal once more due to the rise in environmental awareness. Likewise, leisure cultures (highlighting desire over utility or necessity) and introspection (seeking spiritual retreat far from the culture of globalization) have significantly increased. Around 1990, some relevant events announce this development: the publication of the book Treehouses by Aikman in 1988 inaugurates in an informal fashion such architectural culture. As for the final limit of the period addressed, an open margin between 2010 and 2015 has been established, out of scholarly prudence. The dissertation objectives have focused on: First, framing the concept of “treehouses”. Second, discovering the motifs and ideas that inspired treehouses in previous periods, and their possible influence on their contemporary successors. These consist basically of idelogical, cultural, social, philosophical, symbolic, mythical and functional attentions. Third, elaborate a taxonomy of the different basic intentions, considerations and triggers that might appear as crucial for the imaginary, conceptual and constructive process of current treehouses (1990-2010). To this end, we stood under the methodological umbrella of the notion of attention as defined by Quaroni, Ferrater, Broadbent and Seguí. We have proposed a reflection on the different kind of attentions and their suitability, distinguishing the following basic attentions: 1) Historical attentions (from the past): this denomination comprises the rhizomatic fabric of social, cultural, anthropological, philosophical, mythical and symbolic attentions. These attentions allow the reader to get a foothold on this broad field before being able to go into the main body of research. We will later discover that these become critical modal attentions for contemporary architectures. 2) Contemporary functional attentions. A multiple connection will be established with other basic ergonomic, organisational, typological and environmental attentions clearly influenced by them. They are classified in an unprecedented taxonomy of thirty-eight subcategories that move us away from the stereotype of the tree house as a site of defense and protection, or as a children’s playground. 3) Contemporary constructive attentions. They will be linked with basic biological, structural-carrying, typological-constructive, environmental attentions (of materials) taken into account by constructors. Likewise, the construction systems for carrying and self-carrying (artificial-natural) architectures, as well as for 100% natural ones, are revealed. Besides, we disclose the six structural mechanisms employed to fasten cabins to trees, and which the most suitable trees to support such structures are. 4) Contemporary formal attentions, including their connections with spatial, organizational and basic environmental attentions. Simple and complex formal systematic taxonomies (pragmatic, iconic, analogical and canonical) have been established. Their analogy to other realities and to formal geometrical (canonical) structuring is studied in depth as utterly significant. The research concludes by reflecting on the rhizomatic set of attentions, disciplines, notions and concepts inherent in the field of treehouses through an ideogram. The final view engages with the time span of these architectures by highlighting the fifty most noteworthy on account of the higher consistency of their attentional competence, either total or partial.

Principios Modernos y Organización de Proyectos

La tesis desvela el origen moderno del modo de afrontar el proyecto de arquitectura mediante métodos de ordenación. Estos procedimientos, fieles a la poética que los respalda, establecen unos principios que anteceden y constituyen la base del método y estos son técnicos, funcionales y sociales. Una cartografía de los principios propuestos por los arquitectos y los teóricos de la arquitectura nos aporta el medio de investigación de la tesis, los libros de arquitecto. La intelectualización y conceptualización que conlleva la arquitectura durante el siglo XX, favorecida por la asociación de los arquitectos, los historiadores y los críticos en encuentros y debates, fomentará la aparición de textos en los que el proyecto de arquitectura se contextualice en su entorno. De esta manera se deja de lado la resolución de un proyecto concreto, mediante la elección entre diversas posibilidades contingentes, para establecer que el acto de proyectar constituye un problema abstracto. Esta postura modifica la resolución del proyecto de arquitectura que ahora se acomete como un caso particular a resolver según los principios y métodos propuestos. Los libros de arquitecto se evidencian como el medio privilegiado para exponer los principios y los métodos de organización de estos, posicionándolos en el ambiente cultural y social. Los principios técnica, función y ciudad que fascinan a los arquitectos desde los años veinte, sufren un proceso de puesta en crisis entre el final de la II Guerra Mundial y la crisis del petróleo del año 1973. A partir de los años setenta pierden su vigencia y ya no deslumbran. Quedan relegados a un principio más, que afecta al proyecto de arquitectura, pero no lo determina. Este desplazamiento en vez de debilitarlos hace que se manifiesten en todo su poder creativo. Las herramientas que explicitan estos principios tales como, la seriación, la modulación, el cambio de escala, los métodos de organización jerarquizados o adaptables, las taxonomías, los diagramas y los relatos, pierden su carga de novedad y de certeza, y su poder metafórico alcanzando la contemporaneidad convertidas en una estructura conceptual sobre la que se organizan los proyectos de arquitectura. ABSTRACT This dissertation reveals the modernist origins of approaching architectural design through organizational methods. These procedures, true to the poetics that back them, establish certain principles that precede and constitute the foundations of the method, and they are technical, functional and social. A map of the principles proposed by architects and architecture theorists provides the means of research of this dissertation; architect’s books. The intellectualization and conceptualization regarding architecture during the 20th century, assisted by the association of architects, historians and critics through conferences and debates, encouraged the advent of texts in which the architectural project is contextualized in its surroundings. In this way, the issue of solving a specific design is set aside by choosing between a diverse set of possible contingencies, establishing that the act of designing constitutes an abstract problem. This stance changed the way the architectural project was carried out by becoming a specific case to be worked out according to the principles and methods proposed. Architect’s books become the privileged means to present the principles and organizational methods of architects, positioning them in cultural and social circles. The principles of technology, functionality and urbanity that had fascinated architects since the 1920s, were put into question between the end of World War II and the 1973 oil crisis. After the 1970s these principles were no longer valid and ceased to amaze. But this displacement, instead of debilitating them, made them appear in their full creative force. The tools that assert these principles, such as serial production, modulation, change of scales, hierarchical or adaptable organizational methods, taxonomies, diagrams and narratives, lose their novel and undisputed content as well as their metaphorical power, reaching us, nowadays, turned into a conceptual structure upon which we organize architectural design.

La transformación de la fachada en la arquitectura del siglo XX : evolución de los elementos arquitectónicos hacia el espacio

Esta tesis doctoral, bajo el título “La transformación de la fachada en la arquitectura del siglo XX. Evolución de los elementos arquitectónicos hacia el espacio único”, examina –siguiendo el método deductivo mediante investigación documental y de campo– los principales mecanismos proyectuales que han originado una transformación arquitectónica en la fachada. El término fachada, leído normalmente como sinónimo de arquitectura, ha sido analizado bajo taxonomías historiográficas, sociopolíticas, formales, compositivas o materiales. Más allá de estas clasificaciones, esta investigación determina cómo han evolucionado los elementos arquitectónicos hacia el espacio único, transformando con ello tanto la realidad física como el concepto de fachada. Proyectar, como diría Robert Venturi1. 1966, tanto desde el exterior al interior como desde el interior al exterior, produce las tensiones necesarias que ayudan a generar la arquitectura. De ahí la importancia del estudio de la transformación de la fachada como faccia, máscara, disfraz o sistema de representación, a la fachada como un diafragma activo, como un espacio de relación o como un límite donde se produce una experiencia arquitectónica con nuevos significados. El término fachada, del latín facies y del italiano facciata, fue creado como tal durante el siglo XVI, aunque como elemento arquitectónico es una realidad clásica y un concepto humanista reinventado en el Renacimiento. A principios del siglo XX la fachada se transforma radicalmente, con la aparición del vidrio plano de grandes dimensiones, y se despoja de su carga historicista. La transparencia literal hace desaparecer (negar) la fachada. La fachada se construye con nuevos materiales, nuevas tecnologías, y responde a un espacio global que espera a ser colonizado por una sociedad en constante mutación; un espacio que irá siendo cada vez más complejo a lo largo del siglo pasado y que tendrá como una de sus principales consecuencias un mayor grado de abstracción en la fachada. Para desarrollar con mayor precisión las intenciones de este trabajo se analiza la acepción de fachada en la que se encuadra la línea de investigación de la tesis doctoral. Siguiendo las indicaciones del Profesor Kenneth Frampton, se ha optado por dedicar precisamente a este análisis el primer capítulo, de precedentes, con el fin de hacer una relectura de la fachada barroca en clave contemporánea. La fachada barroca se estudia como un punto de inflexión, y origen de la transformación, frente al clasicismo de siglos precedentes. Se plantea por tanto como el primero de los mecanismos proyectuales motivo de estudio. Estos mecanismos han sido sometidos a una clasificación que responde a diversos tipos de espacio arquitectónico que han provocado la transformación de la fachada, analizando cada uno de ellos con un filtro bajo el cual se ha desarrollado un estudio pormenorizado. De esta manera se examinan la transformación compositiva de la fachada por medio del espacio dinámico (capítulo 00_precedentes) en San Carlo alle Quattro Fontane de Francesco Borromini, la transformación constructiva de la fachada por medio del espacio membrana (capítulo 01) en la Villa Tugendhat de Mies van der Rohe, la transformación diagramática de la fachada por medio del espacio pliegue (capítulo 02) en la terminal portuaria de Yokohama de FOA, la transformación tecnológica de la fachada por medio del espacio estructura (capítulo 03) en la mediateca de Sendai de Toyo Ito y, finalmente, la transformación fenomenológica de la fachada por medio del espacio múltiple (capítulo 04) en el pabellón de vidrio del Museo Toledo de SANAA. La investigación se completa con el análisis de una serie de textos que acompañan a cada uno de los capítulos, generando así un cuerpo de conocimiento global junto al análisis documental y las visitas de campo de cada uno de los casos de estudio considerados. ABSTRACT This doctoral thesis entitled “The Transformation of the Façade in Twentieth Century Architecture. The Evolution of Architectural Elements Towards a Single Space“ employs a deductive methodology incorporating both archival and field research, to examine the main design strategies that have given rise to the architectural transformation of the façade. The term façade, usually read as a synonym for architecture, has been analyzed under historiographic, sociopolitical, formal, compositive and material taxonomies. Far beyond these classifications, this study determines how architectural elements have evolved towards a single space, consequently transforming both the physical reality and the concept of façade. As Robert Venturi would say,1 to design from the inside-out and from the outside-in can create valid tensions that help generate architecture, hence the importance of this study of the transformation of the façade as a faccia, a mask, disguise or representation system, to the façade as an active diaphragm, a connective space or a limit within which architectural events with new meaning take place. The term fachada (Spanish for façade), from the Latin facies and the Italian facciata, appeared as such during the sixteenth century, although as an architectural element it is a classical ingredient and a humanist concept reinvented during the Renaissance. At the beginning of the 20th century, the façade is radically transformed with the introduction of large format plate glass, stripping it of its historicist content. Literal transparency causes the façade to disappear. The façade is built with new materials, new technologies, responding to a global space to be occupied by an everchanging society. It is a space that becomes increasingly more complex throughout the last century and which will have, as a consequence, a larger degree of abstraction in the façade. In order to more precisely focus this investigation, the meaning of the façade has been scrutinized. Following Professor Kenneth Frampton’s advice, the first chapter -Precedents- is precisely dedicated to this analysis, in order to understand the baroque façade read in a contemporary manner. The baroque façade has been studied as a turning point, the origin of the transformation of the façade, as compared to the classicism of previous centuries. For this reason it is considered the first design strategy to be studied. These strategeies have been sorted into a classification of architectural spaces that have caused the transformation of the façade, all of which having been analyzed using a methodology allowing for detailed study. Thus, this investigation examines the compositional transformation of the façade by means of a dynamic space (chapter 00: Precedents) in San Carlo alle Quattro Fontane by Francesco Borromini, the constructive transformation of the façade by means of a membrane space (chapter 01) in the Tugendhat Villa by Mies van der Rohe, the diagrammatic transformation of the façade by means of a folded space (chapter 02) in the Yokohama International Port Terminal by FOA, the technological transformation of the façade by means of a structure space (chapter 03) in the Sendai Mediathèque by Toyo Ito, and finally, the technological transformation of the façade by means of multiple space (chapter 04) in the Glass Pavilion of the Toledo Museum of Art by SANAA. The research is supplemented by the analysis of a series of texts presented alongside each chapter; creating a global body of knowledge together alongside the documentary analysis and on site analysis of each of the case studies considered.