Estudio de la diversidad genética de Botrytis sp en orquídeas y la resistencia al ataque del hongo

En la actualidad la mayoría de plantas sufren pérdidas debido a las enfermedades que les provocan los hongos. Uno de estos grupos amenazado por el ataque de los hongos son las especies de la familia Orchidaceae, especies que se encuentran amenazadas y con numerosas especies en peligro de extinción. Uno de los problemas sanitarios más destacados es Botrytis cinerea, hongo patógeno cosmopolita, causante de enfermedades importantes en muchas plantas tales como frutas, verduras, accesiones de viveros, plantas ornamentales y huertos cultivos (Jarvis 1977; Elad et al., 2007). Este género es uno de los grupos de hongos más ampliamente conocido y distribuido. Contiene 22 especies (Hennebert 1973; Yohalem et al., 2003) y un híbrido (B. allii) (Yohalem & Alabama, 2003) vinculado a las etapas sexuales y un amplio número de huéspedes específicos (Beever y Weds, 2000); infecta más de 200 especies vegetales distintas (Williamson et al., 2007). Dada la importancia de este patógeno se realiza un estudio de caracterización morfológica y molecular del hongo, aislado de plantas de orquídeas cultivadas en condiciones de invernadero, de hortalizas y plantas frutales, con síntomas de necrosis, atizonamientos y pudriciones. El análisis de las características morfológicas (presencia de esclerocios, tamaño de conidios, presencia de estructuras sexuales in vitro) y fenotípicas (crecimiento micelial a diferentes temperaturas, germinación de esporas), nos permitió determinar características importantes del comportamiento del hongo y establecer cuáles son las mejores condiciones para su patogenicidad. Se afianzo este trabajo con estudios moleculares a través del análisis de la región ribosomal ITS1-ITS4. Entre los aislados estudiados se identificaron dos especies diferentes, Botrytis cinerea y B. fabiopsis, esta última conocida como especifica de Vicia faba, se lo aisló de una planta de Pelargonium sp. Se hizo un análisis filogenético para comparar estas dos especies, encontrándose que B. fabiopsis está estrechamente relacionada con B. cinerea y B. elliptica, pero lejanamente relacionado con B. fabae. Además, se analizó las poblaciones de los aislados de Botrytis, para ello se seleccionaron tres parejas de cebadores microsatelites con altos porcentajes de polimorfismo. Al analizar la similaridad entre los aislados se determinaron tres grupos de poblaciones de B. cinerea entre los cuales Botrytis fabiopsis comparte un grupo grande con B. cinerea. La diferenciación genética no fue significativa entre la población de aislados de orquídeas y hortalizas, la diferencia génica que fue muy baja, lo que sugiere que la especificidad de Botrytis no está dada por los hospederos, aunque la posibilidad de la especificidad con algún cultivo no puede descartarse. ABSTRACT Most plants suffer diseases caused by fungi. Orchidaceae is one of the threatened groups with many endangered species. Included into the most important problems in plant health is Botrytis cinerea, a cosmopolitan pathogen which causes major diseases in many plants of agronomic interest such as fruits, vegetables, planthouses accessions and ornamental plants (Jarvis, 1977; Elad et al, 2007). The genus Botrytis is one of the most widely and disseminated fungi. The genus contains 22 species (Hennebert 1973; Yohalem et al, 2003) and a hybrid (B. allii) (Yohalem & Alabama, 2003) linked to the sexual stages of a large number of specific hosts (Beever & Weds, 2000); infects over 200 different plant species (Williamson et al., 2007). Due to the importance of this pathogen, a study of morphological and molecular characterization of the fungus was carried out. Fungi samples were isolated from orchid plants grown in greenhouse conditions, vegetables and fruits with signs of necrosis, blight and rottening. To establish the best conditions for pathogenicity, behavioral characteristics of the fungus were studied through the analysis of morphological characteristics (presence of sclerotia, conidia size, sexual structures in vitro) and mycelial growth at different temperatures. To complete the characterization of the fungi, a molecular study was performed via the analysis of ribosomal ITS1-ITS4 region. Two different species were identified: Botrytis cinerea and Botrytis fabiopsis (known by specificity to Vicia faba). B. fabiopsis was isolated from a plant of the genus Pelargonium. A phylogenetic analysis was carried out to compare these two species leading to the conclusion that B. fabiopsis is closely related to B. cinerea and B. elliptica, but distantly related to B. fabae. The populations of Botrytis isolates were also analyzed. Three pairs of microsatellite primers with high percentages of polymorphism were selected. A similarity analysis showed three groups of populations of B. cinerea, including Botrytis fabiopsis. The genetic differentiation was not significant among the populations of isolates from orchids and vegetables; genetic differences were very low, suggesting that the specificity of Botrytis species is not given by the hosts.

Analysis of duplication in the Spanish durum wheat collection maintained in the CRF-INIA on the basis of agro-morphological traits and gliadin proteins

A total of 106 potential duplicate cases involved 277 accessions were detected on the basis of passport data in the durum wheat collection maintained in the CRF-INIA. Similarity between accessions was measured by agro-morphological traits. The 90% of the agro-morphological duplication were verified with gliadin proteins, allowing identification of similar material with greater refinement than agro-morphological data. However, the results indicated not to decide for rationalisation only on the basis of molecular data.

Analysis of duplication in the Spanish durum wheat collection maintained in the CRF-INIA on the basis of agro-morphological traits and gliadin proteins

A total of 106 potential duplicate cases involved 277 accessions were detected on the basis of passport data in the durum wheat collection maintained in the CRF-INIA. Similarity between accessions was measured by agro-morphological traits. The 90% of the agro-morphological duplication were verified with gliadin proteins, allowing identification of similar material with greater refinement than agro-morphological data. However, the results indicated not to decide for rationalisation only on the basis of molecular data

SSONDE: Semantic Similarity On liNked Data Entities

Linked data offers a promising setting to encode, publish and share metadata of resources. As the matter of fact, it is already adopted by data producers such as European Environment Agency, US and some EU Governs, whose first ambition is to share (meta)data making their processes more effective and transparent. Such as an increasing interest and involvement of data providers surely represents a genuine witness of the web of data success, but in a longer perspective, frameworks supporting linked data consumers in their decision making processes will be a compelling need. In this respect, the talk is introducing SSONDE, a framework enabling in detailed comparison, ranking and selection of linked data resources through the analysis of their RDF ontology driven metadata. SSONDE implements an instance similarity especially designed to support in resource selection, namely the process stakeholders engage to choose a set of resources suitable for a given analysis purpose: (i) it deploys an asymmetric similarity assessment to emphasize information about gains and losses the stakeholders get adopting a resource in place of another; (ii) it relies on an explicit formalization of contexts to tailor the similarity assessment with respect to specific user-defined selection goals. The talk aims at providing an insight on SSONDE instance similarity and it will briefly describe some examples of SSONDE deployment in the context of linked data consumption.

Idea relationship analysis in open innovation crowdsourcing systems

Idea Management Systems are an implementation of open innovation notion in the Web environment with the use of crowdsourcing techniques. In this area, one of the popular methods for coping with large amounts of data is duplicate de- tection. With our research, we answer a question if there is room to introduce more relationship types and in what degree would this change affect the amount of idea metadata and its diversity. Furthermore, based on hierarchical dependencies between idea relationships and relationship transitivity we propose a number of methods for dataset summarization. To evaluate our hypotheses we annotate idea datasets with new relationships using the contemporary methods of Idea Management Systems to detect idea similarity. Having datasets with relationship annotations at our disposal, we determine if idea features not related to idea topic (e.g. innovation size) have any relation to how annotators perceive types of idea similarity or dissimilarity.

Analysis of Magnetic Nozzles For Space Plasma Thrusters = Análisis de Toberas Magnéticas para Motores Espaciales de Plasma

Esta tesis presenta un análisis teórico del funcionamiento de toberas magnéticas para la propulsión espacial por plasmas. El estudio está basado en un modelo tridimensional y bi-fluido de la expansión supersónica de un plasma caliente en un campo magnético divergente. El modelo básico es ampliado progresivamente con la inclusión de términos convectivos dominantes de electrones, el campo magnético inducido por el plasma, poblaciones electrónicas múltiples a distintas temperaturas, y la capacidad de integrar el flujo en la región de expansión lejana. La respuesta hiperbólica del plasma es integrada con alta precisión y eficiencia haciendo uso del método de las líneas características. Se realiza una caracterización paramétrica de la expansión 2D del plasma en términos del grado de magnetización de iones, la geometría del campo magnético, y el perfil inicial del plasma. Se investigan los mecanismos de aceleración, mostrando que el campo ambipolar convierte la energía interna de electrones en energía dirigida de iones. Las corrientes diamagnéticas de Hall, que pueden hallarse distribuidas en el volumen del plasma o localizadas en una delgada capa de corriente en el borde del chorro, son esenciales para la operación de la tobera, ya que la fuerza magnética repulsiva sobre ellas es la encargada de confinar radialmente y acelerar axialmente el plasma. El empuje magnético es la reacción a esta fuerza sobre el motor. La respuesta del plasma muestra la separación gradual hacia adentro de los tubos de iones respecto de los magnéticos, lo cual produce la formación de corrientes eléctricas longitudinales y pone el plasma en rotación. La ganancia de empuje obtenida y las pérdidas radiales de la pluma de plasma se evalúan en función de los parámetros de diseño. Se analiza en detalle la separación magnética del plasma aguas abajo respecto a las líneas magnéticas (cerradas sobre sí mismas), necesaria para la aplicación de la tobera magnética a fines propulsivos. Se demuestra que tres teorías existentes sobre separación, que se fundamentan en la resistividad del plasma, la inercia de electrones, y el campo magnético que induce el plasma, son inadecuadas para la tobera magnética propulsiva, ya que producen separación hacia afuera en lugar de hacia adentro, aumentando la divergencia de la pluma. En su lugar, se muestra que la separación del plasma tiene lugar gracias a la inercia de iones y la desmagnetización gradual del plasma que tiene lugar aguas abajo, que permiten la separación ilimitada del flujo de iones respecto a las líneas de campo en condiciones muy generales. Se evalúa la cantidad de plasma que permanece unida al campo magnético y retorna hacia el motor a lo largo de las líneas cerradas de campo, mostrando que es marginal. Se muestra cómo el campo magnético inducido por el plasma incrementa la divergencia de la tobera magnética y por ende de la pluma de plasma en el caso propulsivo, contrariamente a las predicciones existentes. Se muestra también cómo el inducido favorece la desmagnetización del núcleo del chorro, acelerando la separación magnética. La hipótesis de ambipolaridad de corriente local, común a varios modelos de tobera magnética existentes, es discutida críticamente, mostrando que es inadecuada para el estudio de la separación de plasma. Una inconsistencia grave en la derivación matemática de uno de los modelos más aceptados es señalada y comentada. Incluyendo una especie adicional de electrones supratérmicos en el modelo, se estudia la formación y geometría de dobles capas eléctricas en el interior del plasma. Cuando dicha capa se forma, su curvatura aumenta cuanto más periféricamente se inyecten los electrones supratérmicos, cuanto menor sea el campo magnético, y cuanto más divergente sea la tobera magnética. El plasma con dos temperaturas electrónicas posee un mayor ratio de empuje magnético frente a total. A pesar de ello, no se encuentra ninguna ventaja propulsiva de las dobles capas, reforzando las críticas existentes frente a las propuestas de estas formaciones como un mecanismo de empuje. Por último, se presenta una formulación general de modelos autosemejantes de la expansión 2D de una pluma no magnetizada en el vacío. El error asociado a la hipótesis de autosemejanza es calculado, mostrando que es pequeño para plumas hipersónicas. Tres modelos de la literatura son particularizados a partir de la formulación general y comparados. Abstract This Thesis presents a theoretical analysis of the operation of magnetic nozzles for plasma space propulsion. The study is based on a two-dimensional, two-fluid model of the supersonic expansion of a hot plasma in a divergent magnetic field. The basic model is extended progressively to include the dominant electron convective terms, the plasma-induced magnetic field, multi-temperature electron populations, and the capability to integrate the plasma flow in the far expansion region. The hyperbolic plasma response is integrated accurately and efficiently with the method of the characteristic lines. The 2D plasma expansion is characterized parametrically in terms of the ion magnetization strength, the magnetic field geometry, and the initial plasma profile. Acceleration mechanisms are investigated, showing that the ambipolar electric field converts the internal electron energy into directed ion energy. The diamagnetic electron Hall current, which can be distributed in the plasma volume or localized in a thin current sheet at the jet edge, is shown to be central for the operation of the magnetic nozzle. The repelling magnetic force on this current is responsible for the radial confinement and axial acceleration of the plasma, and magnetic thrust is the reaction to this force on the magnetic coils of the thruster. The plasma response exhibits a gradual inward separation of the ion streamtubes from the magnetic streamtubes, which focuses the jet about the nozzle axis, gives rise to the formation of longitudinal currents and sets the plasma into rotation. The obtained thrust gain in the magnetic nozzle and radial plasma losses are evaluated as a function of the design parameters. The downstream plasma detachment from the closed magnetic field lines, required for the propulsive application of the magnetic nozzle, is investigated in detail. Three prevailing detachment theories for magnetic nozzles, relying on plasma resistivity, electron inertia, and the plasma-induced magnetic field, are shown to be inadequate for the propulsive magnetic nozzle, as these mechanisms detach the plume outward, increasing its divergence, rather than focusing it as desired. Instead, plasma detachment is shown to occur essentially due to ion inertia and the gradual demagnetization that takes place downstream, which enable the unbounded inward ion separation from the magnetic lines beyond the turning point of the outermost plasma streamline under rather general conditions. The plasma fraction that remains attached to the field and turns around along the magnetic field back to the thruster is evaluated and shown to be marginal. The plasmainduced magnetic field is shown to increase the divergence of the nozzle and the resulting plasma plume in the propulsive case, and to enhance the demagnetization of the central part of the plasma jet, contrary to existing predictions. The increased demagnetization favors the earlier ion inward separation from the magnetic field. The local current ambipolarity assumption, common to many existing magnetic nozzle models, is critically discussed, showing that it is unsuitable for the study of plasma detachment. A grave mathematical inconsistency in a well-accepted model, related to the acceptance of this assumption, is found out and commented on. The formation and 2D shape of electric double layers in the plasma expansion is studied with the inclusion of an additional suprathermal electron population in the model. When a double layer forms, its curvature is shown to increase the more peripherally suprathermal electrons are injected, the lower the magnetic field strength, and the more divergent the magnetic nozzle is. The twoelectron- temperature plasma is seen to have a greater magnetic-to-total thrust ratio. Notwithstanding, no propulsive advantage of the double layer is found, supporting and reinforcing previous critiques to their proposal as a thrust mechanism. Finally, a general framework of self-similar models of a 2D unmagnetized plasma plume expansion into vacuum is presented and discussed. The error associated with the self-similarity assumption is calculated and shown to be small for hypersonic plasma plumes. Three models of the literature are recovered as particularizations from the general framework and compared.

A fuzzy extension of MAGERIT methodology for risk analysis in information systems

We propose a fuzzy approach to deal with risk analysis for information systems. We extend MAGERIT methodology that valuates the asset dependencies to a fuzzy framework adding fuzzy linguistic terms to valuate the different elements (terminal asset values, asset dependencies as well as the probability of threats and the resulting asset degradation) in risk analysis. Computations are based on the trapezoidal fuzzy numbers associated with these linguistic terms and, finally, the results of these operations are translated into a linguistic term by means of a similarity function.

A Spectral Analysis of LDA Turbulent Flow Measurements in a Ship Air Wake

Helicopters are one of the most important tactical elements in maritime operations. The necessity for an improvement in the conditions in which the landing and take-off operations are carried out leads to the study of the flow that separates from the ship?s superstructure over the flight deck. To investigate this flow a series of wind tunnel experiments have been performed by testing a sub-scale model of a generic frigate. Measurements of the flow?s velocity have been taken by means of Laser Doppler Anemometry (LDA) in five points that simulate the last path of the landing trajectory. The data obtained in these experiments is manipulated in a frequency analysis where the corresponding spectra are calculated. Onboard measurements from an actual full scale frigate are analyzed and compared with the wind tunnel results. Conclusions obtained consist of a series of illustrative values of turbulent energy frequency ranges which can be valuable for any study in this field. The comparison shows a clear similarity between both experiments, reasserting the wind tunnel measurements and its reliability.

Searching for a consensus similarity function for generalized trapezoidal fuzzy numbers

There is controversy regarding the use of the similarity functions proposed in the literature to compare generalized trapezoidal fuzzy numbers since conflicting similarity values are sometimes output for the same pair of fuzzy numbers. In this paper we propose a similarity function aimed at establishing a consensus. It accounts for the different approaches of all the similarity functions. It also has better properties and can easily incorporate new parameters for future improvements. The analysis is carried out on the basis of a large and representative set of pairs of trapezoidal fuzzy numbers.