Divergence of the IGS rDNA in Fusarium proliferatum and Fusarium globosum reveals two strain specific non-orthologous types

A phylogenic analysis of Fusarium proliferatum and closely related species was performed using the most variable part within the intergenic spacer of the nuclear ribosomal DNA (IGS) and compared with a previously reported phylogeny performed in the same group of samples with a partial region of the nuclear single copy gene encoding the elongation factor 1α (EF-1α). The phylogenies from both genomic sequences were not concordant and revealed the presence of two nonorthologous IGS types, named types I and II, in F. proliferatum and Fusarium globosum. Two specific PCR assays designed to amplify either IGS type I or type II revealed that only one IGS type was present in each individual in these two species. The presence of both IGS types at the species level indicates that homogenization has not been achieved yet. This might be retarded if panmictic sexual reproduction was affected by certain levels of clonal reproduction and/or by the diverse hosts that these species are able to colonize. This study indicates that taxonomic studies carried out with the IGS rDNA, which has been widely used in Fusarium, should be undertaken with caution.

Fusarium proliferatum isolated from garlic in Spain: Identification, toxigenic potential and pathogenicity on related Allium species

Fusarium proliferatum has been reported on garlic in the Northwest USA, Spain and Serbia, causing water-soaked tan-colored lesions on cloves. In this work, Fusarium proliferatum was isolated from 300 symptomatic garlic bulbs. Morphological identification of Fusarium was confirmed using species-specific PCR assays and EF-1α sequencing. Confirmation of pathogenicity was conducted with eighteen isolates. Six randomly selected F. proliferatum isolates from garlic were tested for specific pathogenicity and screened for fusaric acid production. Additionally, pathogenicity of each F. proliferatum isolate was tested on healthy seedlings of onion (Allium cepa), leek (A. porrum), scallions (A. fistulosum), chives (A. schoenoprasum) and garlic (A. sativum). A disease severity index (DSI) was calculated as the mean severity on three plants of each species with four test replicates. Symptoms on onion and garlic plants were observed three weeks after inoculation. All isolates tested produced symptoms on all varieties inoculated. Inoculation of F. proliferatum isolates from diseased garlic onto other Allium species provided new information on host range and pathogenicity. The results demonstrated differences in susceptibility with respect to host species and cultivar. The F. proliferatum isolates tested all produced fusaric acid (FA); correlations between FA production and isolate pathogenicity are discussed. Additionally, all isolates showed the presence of the FUM1 gene suggesting the ability of Spanish isolates to produce fumonisins.

A comparison between PML, infinite elements and an iterative BEM as mesh truncation methods for HP self-adaptive procedures in electromagnetics

Finite element hp-adaptivity is a technology that allows for very accurate numerical solutions. When applied to open region problems such as radar cross section prediction or antenna analysis, a mesh truncation method needs to be used. This paper compares the following mesh truncation methods in the context of hp-adaptive methods: Infinite Elements, Perfectly Matched Layers and an iterative boundary element based methodology. These methods have been selected because they are exact at the continuous level (a desirable feature required by the extreme accuracy delivered by the hp-adaptive strategy) and they are easy to integrate with the logic of hp-adaptivity. The comparison is mainly based on the number of degrees of freedom needed for each method to achieve a given level of accuracy. Computational times are also included. Two-dimensional examples are used, but the conclusions directly extrapolated to the three dimensional case.

Contribución al análisis eficiente y a la mejora de prestaciones de antenas reflectarray

El diseño de una antena reflectarray bajo la aproximación de periodicidad local requiere la determinación de la matriz de scattering de estructuras multicapa con metalizaciones periódicas para un gran número de geometrías diferentes. Por lo tanto, a la hora de diseñar antenas reflectarray en tiempos de CPU razonables, se necesitan herramientas númericas rápidas y precisas para el análisis de las estructuras periódicas multicapa. En esta tesis se aplica la versión Galerkin del Método de los Momentos (MDM) en el dominio espectral al análisis de las estructuras periódicas multicapa necesarias para el diseño de antenas reflectarray basadas en parches apilados o en dipolos paralelos coplanares. Desgraciadamente, la aplicación de este método numérico involucra el cálculo de series dobles infinitas, y mientras que algunas series convergen muy rápidamente, otras lo hacen muy lentamente. Para aliviar este problema, en esta tesis se propone un novedoso MDM espectral-espacial para el análisis de las estructuras periódicas multicapa, en el cual las series rápidamente convergente se calculan en el dominio espectral, y las series lentamente convergentes se calculan en el dominio espacial mediante una versión mejorada de la formulación de ecuaciones integrales de potenciales mixtos (EIPM) del MDM. Esta versión mejorada se basa en la interpolación eficiente de las funciones de Green multicapa periódicas, y en el cálculo eficiente de las integrales singulares que conducen a los elementos de la matriz del MDM. El novedoso método híbrido espectral-espacial y el tradicional MDM en el dominio espectral se han comparado en el caso de los elementos reflectarray basado en parches apilados. Las simulaciones numéricas han demostrado que el tiempo de CPU requerido por el MDM híbrido es alrededor de unas 60 veces más rápido que el requerido por el tradicional MDM en el dominio espectral para una precisión de dos cifras significativas. El uso combinado de elementos reflectarray con parches apilados y técnicas de optimización de banda ancha ha hecho posible diseñar antenas reflectarray de transmisiónrecepción (Tx-Rx) y polarización dual para aplicaciones de espacio con requisitos muy restrictivos. Desgraciadamente, el nivel de aislamiento entre las polarizaciones ortogonales en antenas DBS (típicamente 30 dB) es demasiado exigente para ser conseguido con las antenas basadas en parches apilados. Además, el uso de elementos reflectarray con parches apilados conlleva procesos de fabricación complejos y costosos. En esta tesis se investigan varias configuraciones de elementos reflectarray basadas en conjuntos de dipolos paralelos con el fin de superar los inconvenientes que presenta el elemento basado en parches apilados. Primeramente, se propone un elemento consistente en dos conjuntos apilados ortogonales de tres dipolos paralelos para aplicaciones de polarización dual. Se ha diseñado, fabricado y medido una antena basada en este elemento, y los resultados obtenidos para la antena indican que tiene unas altas prestaciones en términos de ancho de banda, pérdidas, eficiencia y discriminación contrapolar, además de requerir un proceso de fabricación mucho más sencillo que el de las antenas basadas en tres parches apilados. Desgraciadamente, el elemento basado en dos conjuntos ortogonales de tres dipolos paralelos no proporciona suficientes grados de libertad para diseñar antenas reflectarray de transmisión-recepción (Tx-Rx) de polarización dual para aplicaciones de espacio por medio de técnicas de optimización de banda ancha. Por este motivo, en la tesis se propone un nuevo elemento reflectarray que proporciona los grados de libertad suficientes para cada polarización. El nuevo elemento consiste en dos conjuntos ortogonales de cuatro dipolos paralelos. Cada conjunto contiene tres dipolos coplanares y un dipolo apilado. Para poder acomodar los dos conjuntos de dipolos en una sola celda de la antena reflectarray, el conjunto de dipolos de una polarización está desplazado medio período con respecto al conjunto de dipolos de la otra polarización. Este hecho permite usar solamente dos niveles de metalización para cada elemento de la antena, lo cual simplifica el proceso de fabricación como en el caso del elemento basados en dos conjuntos de tres dipolos paralelos coplanares. Una antena de doble polarización y doble banda (Tx-Rx) basada en el nuevo elemento ha sido diseñada, fabricada y medida. La antena muestra muy buenas presentaciones en las dos bandas de frecuencia con muy bajos niveles de polarización cruzada. Simulaciones numéricas presentadas en la tesis muestran que estos bajos de niveles de polarización cruzada se pueden reducir todavía más si se llevan a cabo pequeñas rotaciones de los dos conjuntos de dipolos asociados a cada polarización. ABSTRACT The design of a reflectarray antenna under the local periodicity assumption requires the determination of the scattering matrix of a multilayered structure with periodic metallizations for quite a large number of different geometries. Therefore, in order to design reflectarray antennas within reasonable CPU times, fast and accurate numerical tools for the analysis of the periodic multilayered structures are required. In this thesis the Galerkin’s version of the Method of Moments (MoM) in the spectral domain is applied to the analysis of the periodic multilayered structures involved in the design of reflectarray antennas made of either stacked patches or coplanar parallel dipoles. Unfortunately, this numerical approach involves the computation of double infinite summations, and whereas some of these summations converge very fast, some others converge very slowly. In order to alleviate this problem, in the thesis a novel hybrid MoM spectral-spatial domain approach is proposed for the analysis of the periodic multilayered structures. In the novel approach, whereas the fast convergent summations are computed in the spectral domain, the slowly convergent summations are computed by means of an enhanced Mixed Potential Integral Equation (MPIE) formulation of the MoM in the spatial domain. This enhanced formulation is based on the efficient interpolation of the multilayered periodic Green’s functions, and on the efficient computation of the singular integrals leading to the MoM matrix entries. The novel hybrid spectral-spatial MoM code and the standard spectral domain MoM code have both been compared in the case of reflectarray elements based on multilayered stacked patches. Numerical simulations have shown that the CPU time required by the hybrid MoM is around 60 times smaller than that required by the standard spectral MoM for an accuracy of two significant figures. The combined use of reflectarray elements based on stacked patches and wideband optimization techniques has made it possible to design dual polarization transmit-receive (Tx-Rx) reflectarrays for space applications with stringent requirements. Unfortunately, the required level of isolation between orthogonal polarizations in DBS antennas (typically 30 dB) is hard to achieve with the configuration of stacked patches. Moreover, the use of reflectarrays based on stacked patches leads to a complex and expensive manufacturing process. In this thesis, we investigate several configurations of reflectarray elements based on sets of parallel dipoles that try to overcome the drawbacks introduced by the element based on stacked patches. First, an element based on two stacked orthogonal sets of three coplanar parallel dipoles is proposed for dual polarization applications. An antenna made of this element has been designed, manufactured and measured, and the results obtained show that the antenna presents a high performance in terms of bandwidth, losses, efficiency and cross-polarization discrimination, while the manufacturing process is cheaper and simpler than that of the antennas made of stacked patches. Unfortunately, the element based on two sets of three coplanar parallel dipoles does not provide enough degrees of freedom to design dual-polarization transmit-receive (Tx-Rx) reflectarray antennas for space applications by means of wideband optimization techniques. For this reason, in the thesis a new reflectarray element is proposed which does provide enough degrees of freedom for each polarization. This new element consists of two orthogonal sets of four parallel dipoles, each set containing three coplanar dipoles and one stacked dipole. In order to accommodate the two sets of dipoles in each reflectarray cell, the set of dipoles for one polarization is shifted half a period from the set of dipoles for the other polarization. This also makes it possible to use only two levels of metallization for the reflectarray element, which simplifies the manufacturing process as in the case of the reflectarray element based on two sets of three parallel dipoles. A dual polarization dual-band (Tx-Rx) reflectarray antenna based on the new element has been designed, manufactured and measured. The antenna shows a very good performance in both Tx and Rx frequency bands with very low levels of cross-polarization. Numerical simulations carried out in the thesis have shown that the low levels of cross-polarization can be even made smaller by means of small rotations of the two sets of dipoles associated to each polarization.

Acoustic displacement triangle based on the individual element test

A three node, displacement based, acoustic element is developed. In order to avoid spurious rotational modes, a higher order stiffness is introduced. The higher order stiffness is developed from an incompatible strain field which computes element volume changes under nodal rotational displacements fields. The higher order strain satisfies the IET requirements, non affecting convergence. The higher order stiffness is modulated, element by element, with a factor. Thus, the displacement based formulation is capable of placing the spurious rotational modes over the range of physical compressional modes that can be accurately captured by the mesh.

A PCR-based method for discriminating between high molecular weight glutenin subunits Bx7 and Bx7* in Triticum aestivum L

The correct assignment of high molecular weight glutenin subunit variants is a key task in wheat breeding. However, the traditional analysis by protein electrophoresis is sometimes difficult and not very precise. This work describes a novel DNA marker for the accurate discrimination between the Glu-B1 locus subunits Bx7 and Bx7*. The analysis of one hundred and forty two bread wheat cultivars from different countries has highlighted a great number of misclassifications in the literature that could lead to wrong conclusions in studies of the relationship between glutenin composition and wheat quality.

Discrete element analysis for the assessment of the accuracy of load cell-based dynamic weighing systems in grape harvesters under different ground conditions

Dynamic weighing systems based on load cells are commonly used to estimate crop yields in the field. There is lack of data, however, regarding the accuracy of such weighing systems mounted on harvesting machinery, especially on that used to collect high value crops such as fruits and vegetables. Certainly, dynamic weighing systems mounted on the bins of grape harvesters are affected by the displacement of the load inside the bin when moving over terrain of changing topography. In this work, the load that would be registered in a grape harvester bin by a dynamic weighing system based on the use of a load cell was inferred by using the discrete element method (DEM). DEM is a numerical technique capable of accurately describing the behaviour of granular materials under dynamic situations and it has been proven to provide successful predictions in many different scenarios. In this work, different DEM models of a grape harvester bin were developed contemplating different influencing factors. Results obtained from these models were used to infer the output given by the load cell of a real bin. The mass detected by the load cell when the bin was inclined depended strongly on the distribution of the load within the bin, but was underestimated in all scenarios. The distribution of the load was found to be dependent on the inclination of the bin caused by the topography of the terrain, but also by the history of inclination (inclination rate, presence of static periods, etc.) since the effect of the inertia of the particles (i.e., representing the grapes) was not negligible. Some recommendations are given to try to improve the accuracy of crop load measurement in the field.

Finite element code-based modeling of a multi-feature isolation system and passive alleviation of possible inner pounding

The existing seismic isolation systems are based on well-known and accepted physical principles, but they are still having some functional drawbacks. As an attempt of improvement, the Roll-N-Cage (RNC) isolator has been recently proposed. It is designed to achieve a balance in controlling isolator displacement demands and structural accelerations. It provides in a single unit all the necessary functions of vertical rigid support, horizontal flexibility with enhanced stability, resistance to low service loads and minor vibration, and hysteretic energy dissipation characteristics. It is characterized by two unique features that are a self-braking (buffer) and a self-recentering mechanism. This paper presents an advanced representation of the main and unique features of the RNC isolator using an available finite element code called SAP2000. The validity of the obtained SAP2000 model is then checked using experimental, numerical and analytical results. Then, the paper investigates the merits and demerits of activating the built-in buffer mechanism on both structural pounding mitigation and isolation efficiency. The paper addresses the problem of passive alleviation of possible inner pounding within the RNC isolator, which may arise due to the activation of its self-braking mechanism under sever excitations such as near-fault earthquakes. The results show that the obtained finite element code-based model can closely match and accurately predict the overall behavior of the RNC isolator with effectively small errors. Moreover, the inherent buffer mechanism of the RNC isolator could mitigate or even eliminate direct structure-tostructure pounding under severe excitation considering limited septation gaps between adjacent structures. In addition, the increase of inherent hysteretic damping of the RNC isolator can efficiently limit its peak displacement together with the severity of the possibly developed inner pounding and, therefore, alleviate or even eliminate the possibly arising negative effects of the buffer mechanism on the overall RNC-isolated structural responses.