Self-consistent resonance absorption with two layer profile steepening

Resonance absorption of p-polarized light, incident at angle 6 on a flowing, stratified plasma, is analyzed; profile steepening within (i) a layer around the turning point, and (ii) a thinner,embedded sublayer at the critical surface is taken into account self-consistently. The entire steepened region is taken as collisionless and isothermal. The structure of the main layer shows a variety of regimes, depending on how the flow crosses a sonic point. The structure of the sublayer is also determined; it is entirely subsonic (with no wave breaking) for a well-defined,broad parameter range. Density changes across both layer and sublayer, and fractional absorption, are given in terms of [(wavelength)2 Xintensity/temperature], and (temperature/mec2). The flow outside the double structure is also analyzed for particular conditions.

Conditional density approximations with mixtures of polynomials

Mixtures of polynomials (MoPs) are a non-parametric density estimation technique especially designed for hybrid Bayesian networks with continuous and discrete variables. Algorithms to learn one- and multi-dimensional (marginal) MoPs from data have recently been proposed. In this paper we introduce two methods for learning MoP approximations of conditional densities from data. Both approaches are based on learning MoP approximations of the joint density and the marginal density of the conditioning variables, but they differ as to how the MoP approximation of the quotient of the two densities is found. We illustrate and study the methods using data sampled from known parametric distributions, and we demonstrate their applicability by learning models based on real neuroscience data. Finally, we compare the performance of the proposed methods with an approach for learning mixtures of truncated basis functions (MoTBFs). The empirical results show that the proposed methods generally yield models that are comparable to or significantly better than those found using the MoTBF-based method.

Intermittency reinjection probability density function with and without noise effects.

Intermittency phenomenon is a continuous route from regular to chaotic behaviour. Intermittency is an occurrence of a signal that alternates chaotic bursts between quasi-regular periods called laminar phases, driven by the so called reinjection probability density function (RPD). In this paper is introduced a new technique to obtain the RPD for type-II and III intermittency. The new RPD is more general than the classical one and includes the classical RPD as a particular case. The probabilities of the laminar length, the average laminar lengths and the characteristic relations are determined with and without lower bound of the reinjection in agreement with numerical simulations. Finally, it is analyzed the noise effect in intermittency. A method to obtain the noisy RPD is developed extending the procedure used in the noiseless case. The analytical results show a good agreement with numerical simulations.

Morphological Functions to Quantify Three-Dimensional Tomograms of Macropore Structure in a Vineyard Soil with Two Different Management Regimes

Soil tomography and morphological functions built over Minkowski functionals were used to describe the impact on pore structure of two soil management practices in a Mediterranean vineyard. Soil structure controls important physical and biological processes in soil–plant–microbial systems. Those processes are dominated by the geometry of soil pore structure, and a correct model of this geometry is critical for understanding them. Soil tomography has been shown to provide rich three-dimensional digital information on soil pore geometry. Recently, mathematical morphological techniques have been proposed as powerful tools to analyze and quantify the geometrical features of porous media. Minkowski functionals and morphological functions built over Minkowski functionals provide computationally efficient means to measure four fundamental geometrical features of three-dimensional geometrical objects, that is, volume, boundary surface, mean boundary surface curvature, and connectivity. We used the threshold and the dilation and erosion of three-dimensional images to generate morphological functions and explore the evolution of Minkowski functionals as the threshold and as the degree of dilation and erosion changes. We analyzed the three-dimensional geometry of soil pore space with X-ray computed tomography (CT) of intact soil columns from a Spanish Mediterranean vineyard by using two different management practices (conventional tillage versus permanent cover crop of resident vegetation). Our results suggested that morphological functions built over Minkowski functionals provide promising tools to characterize soil macropore structure and that the evolution of morphological features with dilation and erosion is more informative as an indicator of structure than moving threshold for both soil managements studied.

Análisis de parámetros de fendas para la estimación de las propiedades mecánicas de vigas de madera de Pinus sylvestris L. Analysis of parameters for assessing drying fissures to estimate their influence on the mechanical properties of Pinus sylvestris L. wooden beams

El principal objetivo de este estudio es evaluar la influencia de las fendas de secado en las propiedades mecánicas de vigas de madera. Para esto, se utilizan 40 vigas de Pino silvestre (Pinus sylvestris L) de 4200 mm de longitud y 150x200 mm de sección que fueron ensayadas según norma EN 408. Las fendas se registran detalladamente atendiendo a su longitud y posición en cada cara de la viga, y midiendo el espesor y la profundidad cada 100mm a lo largo de la viga. Solo el 10% de la muestra es rechazada por las fendas, según los criterios establecidos por la norma española de clasificación visual UNE 56544. Para evaluar la influencia de las fendas en las propiedades mecánicas, se usan tres parámetros globales basados en el área, el volumen o la profundad de la fenda, y dos locales basados en la profundidad máxima y la profundidad en la zona de rotura. Además se determina la densidad de las piezas. Estos parámetros se comparan con las propiedades mecánicas (tensión de rotura, módulo de elasticidad y energía de rotura) y se encuentra escasa relación entre ellos. Las mejores correlaciones se encuentran entre los parámetros relacionados con la profundidad de las fendas, tanto con el módulo de elasticidad como con la tensión de rotura. The aim of this study is the evaluation of the influence of drying fissures on the mechanical properties of timber beams. For that purpose, 40 sawn timber pieces of Scots pine (Pinus sylvestris L.) with 150x200 mm in cross-section and 4200 mm in length have been tested according to EN 408, obtaining MOR and MOE. The fissures were registered in detail measuring their length and position in each face of the beam, and the thickness and depth every 100 mm in length. Only 10 % of the pieces were rejected because fissures, according to UNE 56544 Spanish visual grading standard. To evaluate the influence of fissures in mechanical properties three global parameters: Fissures Area Ratio or ratio between the area occupied by fissures and the total area in the neutral axis plane of the beam; Fissures Volume Ratio or ratio between volume of fissures and the total volume of the beam; Fissures Average Depth and two local parameters were used: Fissures Maximum Depth in the beam, and Fissures Depth in the broken zone of the beam. Also the density of the beams was registered. These parameters were compared with mechanical properties (tensile strength, elasticity modulus, and rupture energy) and the relationship between them had not been founded. The best relationship was founded between the elasticity modulus y the tensile strength with the parameters which included the depth of the fissures.

Evaluation of the In desorption during the capped process in diluted nitride In(Ga)As quantum dots

Diluted nitride self-assembled In(Ga)AsN quantum dots (QDs) grown on GaAs substrates are potential candidates to emit in the windows of maximum transmittance for optical fibres (1.3-1.55 μm). In this paper, we analyse the effect of nitrogen addition on the indium desorption occurring during the capping process of InxGa1−xAs QDs (x = l and 0.7). The samples have been grown by molecular beam epitaxy and studied through transmission electron microscopy (TEM) and photoluminescence techniques. The composition distribution inside the dots was determined by statistical moiré analysis and measured by energy dispersive X-ray spectroscopy. First, the addition of nitrogen in In(Ga)As QDs gave rise to a strong redshift in the emission peak, together with a large loss of intensity and monochromaticity. Moreover, these samples showed changes in the QDs morphology as well as an increase in the density of defects. The statistical compositional analysis displayed a normal distribution in InAs QDs with an average In content of 0.7. Nevertheless, the addition of Ga and/or N leads to a bimodal distribution of the Indium content with two separated QD populations. We suggest that the nitrogen incorporation enhances the indium fixation inside the QDs where the indium/gallium ratio plays an important role in this process. The strong redshift observed in the PL should be explained not only by the N incorporation but also by the higher In content inside the QDs

Time Evolution of the Fractal Dimension in Turbulent Plumes

Turbulent mixing is a very important issue in the study of geophysical phenomena because most fluxes arising in geophysics fluids are turbulent. We study turbulent mixing due to convection using a laboratory experimental model with two miscible fluids of different density with an initial top heavy density distribution. The fluids that form the initial unstable stratification are miscible and the turbulence will produce molecular mixing. The denser fluid comes into the lighter fluid layer and it generates several forced plumes which are gravitationally unstable. As the turbulent plumes develop, the denser fluid comes into contact with the lighter fluid layer and the mixing process grows. Their development is caused by the lateral interaction between these plumes at the complex fractal surface between the dense and light fluids

Fractal scaling of apparent soil moisture estimated from vertical planes of Vertisol pit images

Image analysis could be a useful tool for investigating the spatial patterns of apparent soil moisture at multiple resolutions. The objectives of the present work were (i) to define apparent soil moisture patterns from vertical planes of Vertisol pit images and (ii) to describe the scaling of apparent soil moisture distribution using fractal parameters. Twelve soil pits (0.70 m long × 0.60 m width × 0.30 m depth) were excavated on a bare Mazic Pellic Vertisol. Six of them were excavated in April/2011 and six pits were established in May/2011 after 3 days of a moderate rainfall event. Digital photographs were taken from each Vertisol pit using a Kodak™ digital camera. The mean image size was 1600 × 945 pixels with one physical pixel ≈373 μm of the photographed soil pit. Each soil image was analyzed using two fractal scaling exponents, box counting (capacity) dimension (DBC) and interface fractal dimension (Di), and three prefractal scaling coefficients, the total number of boxes intercepting the foreground pattern at a unit scale (A), fractal lacunarity at the unit scale (Λ1) and Shannon entropy at the unit scale (S1). All the scaling parameters identified significant differences between both sets of spatial patterns. Fractal lacunarity was the best discriminator between apparent soil moisture patterns. Soil image interpretation with fractal exponents and prefractal coefficients can be incorporated within a site-specific agriculture toolbox. While fractal exponents convey information on space filling characteristics of the pattern, prefractal coefficients represent the investigated soil property as seen through a higher resolution microscope. In spite of some computational and practical limitations, image analysis of apparent soil moisture patterns could be used in connection with traditional soil moisture sampling, which always renders punctual estimates

Estudio de la rotura en barras de acero : aspectos experimentales y numéricos

El acero es, junto con el hormigón, el material más ampliamente empleado en la construcción de obra civil y de edificación. Además de su elevada resistencia, su carácter dúctil resulta un aspecto de particular interés desde el punto de vista de la seguridad estructural, ya que permite redistribuir esfuerzos a elementos adyacentes y, por tanto, almacenar una mayor energía antes del colapso final de la estructura. No obstante, a pesar de su extendida utilización, todavía existen aspectos relacionados con su comportamiento en rotura que necesitan una mayor clarificación y que permitirían un mejor aprovechamiento de sus propiedades. Cuando un elemento de acero es ensayado a tracción y alcanza la carga máxima, sufre la aparición de un cuello de estricción que plantea dificultades para conocer el comportamiento del material desde dicho instante hasta la rotura. La norma ISO 6892-1, que define el método a emplear en un ensayo de tracción con materiales metálicos, establece procedimientos para determinar los parámetros relacionados con este tramo último de la curva F − E. No obstante, la definición de dichos parámetros resulta controvertida, ya que éstos presentan una baja reproducibilidad y una baja repetibilidad que resultan difíciles de explicar. En esta Tesis se busca profundizar en el conocimiento del último tramo de la curva F − E de los aceros de construcción. Para ello se ha realizado una amplia campaña experimental sobre dos aceros representativos en el campo de la construcción civil: el alambrón de partida empleado en la fabricación de alambres de pretensado y un acero empleado como refuerzo en hormigón armado. Los dos materiales analizados presentan formas de rotura diferentes: mientras el primero de ellos presenta una superficie de rotura plana con una región oscura claramente apreciable en su interior, el segundo rompe según la clásica superficie en forma de copa y cono. La rotura en forma de copa y cono ha sido ampliamente estudiada en el pasado y existen modelos de rotura que han logrado reproducirla con éxito, en especial el modelo de Gurson- Tvergaard-Needleman (GTN). En cuanto a la rotura exhibida por el primer material, en principio nada impide abordar su reproducción numérica con un modelo GTN, sin embargo, las diferencias observadas entre ambos materiales en los ensayos experimentales permiten pensar en otro criterio de rotura. En la presente Tesis se realiza una amplia campaña experimental con probetas cilíndricas fabricadas con dos aceros representativos de los empleados en construcción con comportamientos en rotura diferentes. Por un lado se analiza el alambrón de partida empleado en la fabricación de alambres de pretensado, cuyo frente de rotura es plano y perpendicular a la dirección de aplicación de la carga con una región oscura en su interior. Por otro lado, se estudian barras de acero empleadas como armadura pasiva tipo B 500 SD, cuyo frente de rotura presenta la clásica superficie en forma de copa y cono. Estos trabajos experimentales han permitido distinguir dos comportamientos en rotura claramente diferenciados entre ambos materiales y, en el caso del primer material, se ha identificado un comportamiento asemejable al exhibido por materiales frágiles. En este trabajo se plantea la hipótesis de que el primer material, cuya rotura provoca un frente de rotura plano y perpendicular a la dirección de aplicación de la carga, rompe de manera cuasifrágil como consecuencia de un proceso de decohesión, de manera que la región oscura que se observa en el centro del frente de rotura se asemeja a una entalla circular perpendicular a la dirección de aplicación de la carga. Para la reproducción numérica de la rotura exhibida por el primer material, se plantea un criterio de rotura basado en un modelo cohesivo que, como aspecto novedoso, se hace depender de la triaxialidad de tensiones, parámetro determinante en el fallo de este tipo de materiales. Este tipo de modelos presenta varias ventajas respecto a los modelos GTN habitualmente empleados. Mientras los modelos GTN precisan de numerosos parámetros para su calibración, los modelos cohesivos precisan fundamentalmente de dos parámetros para definir su curva de ablandamiento: la tensión de decohesión ft y la energía de fractura GF . Además, los parámetros de los modelos GTN no son medibles de manera experimental, mientras que GF sí lo es. En cuanto a ft, aunque no existe un método para su determinación experimental, sí resulta un parámetro más fácilmente interpretable que los empleados por los modelos GTN, que utilizan valores como el porcentaje de huecos presentes en el material para iniciar el fenómeno de coalescencia o el porcentaje de poros que provoca una pérdida total de la capacidad resistente. Para implementar este criterio de rotura se ha desarrollado un elemento de intercara cohesivo dependiente de la triaxialidad de tensiones. Se han reproducido con éxito los ensayos de tracción llevados a cabo en la campaña experimental empleando dicho elemento de intercara. Además, en estos modelos la rotura se produce fenomenológicamente de la misma manera observada en los ensayos experimentales: produciéndose una decohesión circular en torno al eje de la probeta. En definitiva, los trabajos desarrollados en esta Tesis, tanto experimentales como numéricos, contribuyen a clarificar el comportamiento de los aceros de construcción en el último tramo de la curva F − E y los mecanismos desencadenantes de la rotura final del material, aspecto que puede contribuir a un mejor aprovechamiento de las propiedades de estos aceros en el futuro y a mejorar la seguridad de las estructuras construidas con ellos. Steel is, together with concrete, the most widely used material in civil engineering works. Not only its high strength, but also its ductility is of special interest from the point of view of the structural safety, since it enables stress distribution with adjacent elements and, therefore, more energy can be stored before reaching the structural failure. However, despite of being extensively used, there are still some aspects related to its fracture behaviour that need to be clarified and that will allow for a better use of its properties. When a steel item is tested under tension and reaches the maximum load point, necking process begins, which makes difficult to define the material behaviour from that moment onward. The ISO standard 6892-1, which defines the tensile testing method for metallic materials, describes the procedures to obtain some parameters related to this last section of the F − E curve. Nevertheless, these parameters have proved to be controversial, since they have low reproducibility and repeatibility rates that are difficult to explain. This Thesis tries to deepen the knowledge of the last section of the F − E curve for construction steels. An extensive experimental campaign has been carried out with two representative steels used in civil engineering works: a steel rod used for manufacturing prestressing steel wires, before the cold-drawing process is applied, and steel bars used in reinforced concrete structures. Both materials have different fracture surfaces: while the first of them shows a flat fracture surface, perpendicular to the loading direction with a dark region in the centre of it, the second one shows the classical cup-cone fracture surface. The cup-cone fracture surface has been deeply studied in the past and different numerical models have been able to reproduce it with success, with a special mention to the Gurson-Tvergaard-Needleman model (GTN). Regarding the failure surface shown by the first material, in principle it can be numerically reproduced by a GTN model, but the differences observed between both materials in the experimental campaign suggest thinking of a different failure criterium. In the present Thesis, an extensive experimental campaign has been carried out using cylindrical specimens made of two representative construction steels with different fracture behaviours. On one hand, the initial eutectoid steel rod used for manufacturing prestressing steel wires is analysed, which presents a flat fracture surface, perpendicular to the loading direction, and with a dark region in the centre of it. On the other hand, B 500 SD steel bars, typically used in reinforced concrete structures and with the typical cup-cone fracture surface, are studied. These experimental works have allowed distinguishing two clearly different fracture behaviours between both materials and, in the case of the first one, a fragile-like behaviour has been identified. For the first material, which shows a flat fracture surface perpendicular to the loading direction, the following hypothesis is proposed in this study: a quasi-brittle fracture is developed as a consequence of a decohesion process, with the dark region acting as a circular crack perpendicular to the loading direction. To reproduce numerically the fracture behaviour shown by the first material, a failure criterium based on a cohesive model is proposed in this Thesis. As an innovative contribution, this failure criterium depends on the stress triaxiality state of the material, which is a key parameter when studying fracture in this kind of materials. This type of models have some advantages when compared to the widely used GTN models. While GTN models need a high number of parameters to be defined, cohesive models need basically two parameters to define the softening curve: the decohesion stress ft and the fracture energy GF . In addition to this, GTN models parameters cannot be measured experimentally, while GF is indeed. Regarding ft, although no experimental procedure is defined for its obtention, it has an easier interpretation than the parameters used by the GTN models like, for instance, the void volume needed for the coalescence process to start or the void volume that leads to a total loss of the bearing capacity. In order to implement this failure criterium, a triaxiality-dependent cohesive interface element has been developed. The experimental results obtained in the experimental campaign have been successfully reproduced by using this interface element. Furthermore, in these models the failure mechanism is developed in the same way as observed experimentally: with a circular decohesive process taking place around the longitudinal axis of the specimen. In summary, the works developed in this Thesis, both experimental and numerical, contribute to clarify the behaviour of construction steels in the last section of the F − E curve and the mechanisms responsible for the eventual material failure, an aspect that can lead to a better use of the properties of these steels in the future and a safety improvement in the structures built with them.

Estructura de una red esencial de señalización que regula la homeostasis iónica en plantas

Las plantas son organismos sésiles que han desarrollado la capacidad para detectar variaciones sutiles en su ambiente y producir respuestas adaptativas mediante rutas de señalización. Los estímulos causados por el estrés biótico y abiótico son numerosos y dependiendo del tiempo de exposición y su intensidad, pueden reducir la tasa de crecimiento de las plantas y la producción. Los cambios en la concentración del calcio citosólico libre constituyen una de las primeras reacciones intracelulares a las situaciones de estrés abiótico. En esta situación, el calcio actúa como segundo mensajero y las variaciones en su concentración son descodificadas por proteínas de unión a calcio. Las más conocidas son las manos-EF y los dominios C2. Los dominios C2 han sido descritos como dominios de unión a lípidos dependientes de calcio. Estos dominios se consideran proteínas periféricas solubles en agua que se asocian de manera reversible a los lípidos de la membrana mediante una o dos regiones funcionales: el sitio de unión a calcio y el sitio polibásico. A pesar de que se conoce la estructura molecular de algunos dominios C2, se desconocen aspectos relacionados como las reglas que dirigen su forma de interaccionar con los diferentes fosfolípidos y proteínas, la posición que ocupan en la bicapa lipídica y su papel en la transmisión de señales. En esta tesis se ha estudiado una proteína de Arabidopsis thaliana (At3g17980) representativa de una nueva familia de proteínas con dominios C2, que consiste únicamente de un dominio C2. Esta proteína, llamada AtC2.1, ha sido clonada en el vector pETM11, expresada en E. coli y purificada a homogeneidad en dos pasos cromatográficos. Se obtuvieron cristales de AtC2.1 de buena calidad mediante técnicas de difusión de vapor. La proteína fue co-cristalizada con calcio, fosfocolina (POC) y el fosfolípido 1,2-dihexanoil-sn-glicero-3-fosfo-L-serina (PSF). Se recogieron ocho conjuntos de datos de difracción de rayos X empleando radiación sincrotrón. Los cristales difractaron hasta 1.6 Å de resolución. Siete de ellos pertenecían al grupo ortorrómbico P212121, con las dimensiones de la celdilla unidad a = 35.3, b = 88.9, c = 110.6 Å, y un cristal pertenecía al grupo espacial monoclínico C2, con a = 124.84, b = 35.27, c = 92.32 Å y = 121.70º. La estructura se resolvió mediante la técnica MR-SAD utilizando el cinc como dispersor anómalo. La estructura cristalina mostró que la molécula forma un dímero en el que cada protómero se pliega como un dominio C2 típico, con la topología tipo II y presenta una inserción de 43 aminoácidos que la diferencia de los dominios C2 conocidos. El mapa de densidad electrónica mostró dos átomos de calcio por protómero. Se resolvieron las estructuras de AtC2.1 en complejo con POC o PSF. En ambos complejos, el análisis cristalográfico detectó máximos de densidad electrónica en la región correspondiente al sitio polibásico formado por las hebras 2, 3 5 y el lazo 3. Éstos se interpretaron correctamente como dos moléculas de POC y un átomo de cinc, en un complejo, y como la cabeza polar del PSF en el otro. AtC2.1 define un sitio de interacción con lípidos dependiente de cinc. En conclusión, en este trabajo se presenta la estructura tridimensional de AtC2.1, miembro representativo de una familia de proteínas de Arabidopsis thaliana, identificadas como proteínas que interaccionan con los receptores de ABA. Estas proteínas están constituidas únicamente por un dominio C2. El análisis conjunto de los datos biofísicos y cristalográficos muestra que AtC2.1 es un sensor de calcio que une lípidos usando dos sitios funcionales. Estos datos sugieren un mecanismo de inserción en membrana dependiente de calcio que trae consigo la disociación de la estructura dimérica y, por consiguiente, un cambio en las propiedades de superficie de la molécula. Este mecanismo proporciona las bases del reconocimiento y transporte de los receptores de ABA y/o otras moléculas a la membrana celular. Plants are sessile organisms that have developed the capacity to detect slight variations of their environment. They are able to perceive biotic and abiotic stress signals and to transduce them by signaling pathways in order to trigger adaptative responses. Stress factors are numerous and, depending on their exposition time and their concentration, can reduce plant growth rate, limiting the productivity of crop plants. Changes in the cytosolic free calcium concentration are observed as one of the earliest intracellular reactions to abiotic stress signals. Calcium plays a key role as a second messenger, and calcium concentration signatures, called calcium signals, are decodified by calcium binding proteins. The main calcium binding structures are the EF-hand motif and the C2 domains. C2 domain is a calcium dependent lipid-binding domain of approximately 130 amino acids. C2 domain displays two functional regions: the Ca-binding region and the polybasic cluster. Both of them can interact with the membrane phospholipids. Despite the number of C2 domain 3D structures currently available, questions about how they interact with the different target phospholipids, their precise spatial position in the lipid bilayer, interactions with other proteins and their role in transmitting signals downstream, have not yet been explored. In this work we have studied an uncharacterized protein from Arabidopsis thaliana (At3g17980) consisting of only a single C2 domain, as member of a new protein C2-domain family. This protein called AtC2.1 was cloned into the pETM11 vector and expressed in E. coli, allowing the purification to homogeneity in two chromatographic steps. Good quality diffracting crystals were obtained using vapor-diffusion techniques. Crystals were co-crystalized with calcium; phosphocholine (POC) and/or the phospholipid 1,2-dihexanoyl-sn-glycero-3-phospho-L-serine (PSF). Eight data set were collected with synchrotron radiation. Crystals diffracted up to 1.6 Å resolution and seven of them belong to the orthorhombic space group P212121, with unit-cell parameters a = 35.3, b = 88.9, c = 110.6 Å. Another crystal was monoclinic, space group C2, with a = 124.84, b = 35.27, c = 92.32 Å and = 121.70º. The structural model was solved by MR-SAD using Zn2+ as anomalous scatterer. The crystal structure shows that the molecule is a dimer. Each monomer was folded as a canonical C2 domain with the topology II with a 43 residues insertion. The electron density map reveals two calcium ions per molecule. Structures of AtC2.1, complexed with POC and PSF, have been solved. Well-defined extra electron densities were found, in both complexes, within the concave surface formed by strands 2, 3, 5 and loop 3 of AtC2.1. These densities were clearly explained by the presence of the two POC molecules, one zinc atom and head groups of PSF, occupying the cavity of the polybasic site. AtC2.1 defines a new metal dependent lipid-binding site into the polybasic site. In conclusion, in this thesis it is presented the molecular structure of AtC2.1, a representative member of a family of Arabidopsis thaliana C2 domain proteins, of unknown function, but identified as a molecular interacting unit of the ABA receptors. The joint analyses of the biophysical and crystallographic data show that AtC2.1 is a calcium sensor that binds lipids in two sites and suggest a model of calcium-dependent membrane insertion mechanism that will involve either dimer dissociation or a strong rearrangement of the dimeric structure. This mechanism may be the basis for the recognition and delivery of ABA receptors or other protein molecules to cell membranes.

Fractal scaling of apparent soil moisture estimated from vertical planesof Vertisol pit images

Image analysis could be a useful tool for investigating the spatial patterns of apparent soil moisture at multiple resolutions. The objectives of the present work were (i) to define apparent soil moisture patterns from vertical planes of Vertisol pit images and (ii) to describe the scaling of apparent soil moisture distribution using fractal parameters. Twelve soil pits (0.70 m long × 0.60 m width × 0.30 m depth) were excavated on a bare Mazic Pellic Vertisol. Six of them were excavated in April/2011 and six pits were established in May/2011 after 3 days of a moderate rainfall event. Digital photographs were taken from each Vertisol pit using a Kodak? digital camera. The mean image size was 1600 × 945 pixels with one physical pixel ?373 ?m of the photographed soil pit. Each soil image was analyzed using two fractal scaling exponents, box counting (capacity) dimension (DBC) and interface fractal dimension (Di), and three prefractal scaling coefficients, the total number of boxes intercepting the foreground pattern at a unit scale (A), fractal lacunarity at the unit scale (?1) and Shannon entropy at the unit scale (S1). All the scaling parameters identified significant differences between both sets of spatial patterns. Fractal lacunarity was the best discriminator between apparent soil moisture patterns. Soil image interpretation with fractal exponents and prefractal coefficients can be incorporated within a site-specific agriculture toolbox. While fractal exponents convey information on space filling characteristics of the pattern, prefractal coefficients represent the investigated soil property as seen through a higher resolution microscope. In spite of some computational and practical limitations, image analysis of apparent soil moisture patterns could be used in connection with traditional soil moisture sampling, which always renders punctual estimates.

Biokerosene from Babassu and Camelina Oils: production and properties of their blends with fossil kerosene

Babassu and camelina oils have been transesterified with methanol by the classical homogeneous basic catalysis method with good yields. The babassu fatty acid methyl ester (FAME) has been subjected to fractional distillation at vacuum, and the low boiling point fraction has been blended with two types of fossil kerosene, a straight-run atmospheric distillation cut (hydrotreated) and a commercial Jet-A1. The camelina FAME has been blended with the fossil kerosene without previous distillation. The blends of babassu biokerosene and Jet-A1 have met some of the specifications selected for study of the ASTM D1655 standard: smoke point, density, flash point, cloud point, kinematic viscosity, oxidative stability and lower heating value. On the other hand, the blends of babassu biokerosene and atmospheric distillation cut only have met the density parameter and the oxidative stability. The blends of camelina FAME and atmospheric distillation cut have met the following specifications: density, kinematic viscosity at −20 °C, and lower heating value. With these preliminary results, it can be concluded that it would be feasible to blend babassu and camelina biokerosenes prepared in this way with commercial Jet-A1 up to 10 vol % of the former, if these blends prove to accomplish all the ASTM D1655-09 standards.

Realistic performance prediction in nanostructured solar cells as a function of nanostructure dimensionality and density

The behavior of quantum dot, quantum wire, and quantum well InAs/GaAs solar cells is studied with a very simplified model based on experimental results in order to assess their performance as a function of the low bandgap material volume fraction fLOW. The efficiency of structured devices is found to exceed the efficiency of a non-structured GaAs cell, in particular under concentration, when fLOW is high; this condition is easier to achieve with quantum wells. If three different quasi Fermi levels appear with quantum dots the efficiency can be much higher.

Perfect imaging of three object points with only two analytic lens surfaces in two dimensions

In this work, a new two-dimensional analytic optics design method is presented that enables the coupling of three ray sets with two lens profiles. This method is particularly promising for optical systems designed for wide field of view and with clearly separated optical surfaces. However, this coupling can only be achieved if different ray sets will use different portions of the second lens profile. Based on a very basic example of a single thick lens, the Simultaneous Multiple Surfaces design method in two dimensions (SMS2D) will help to provide a better understanding of the practical implications on the design process by an increased lens thickness and a wider field of view. Fermat?s principle is used to deduce a set of functional differential equations fully describing the entire optical system. The transformation of these functional differential equations into an algebraic linear system of equations allows the successive calculation of the Taylor series coefficients up to an arbitrary order. The evaluation of the solution space reveals the wide range of possible lens configurations covered by this analytic design method. Ray tracing analysis for calculated 20th order Taylor polynomials demonstrate excellent performance and the versatility of this new analytical optics design concept.

Distribution of indole-3-acetic acid in Petunia hybrida shoot tip cuttings and relationship between auxin transport, carbohydrate metabolism and adventitious root formation.

To determine the contribution of polar auxin transport (PAT) to auxin accumulation and to adventitious root (AR) formation in the stem base of Petunia hybrida shoot tip cuttings, the level of indole-3-acetic acid (IAA) was monitored in non-treated cuttings and cuttings treated with the auxin transport blocker naphthylphthalamic acid (NPA) and was complemented with precise anatomical studies. The temporal course of carbohydrates, amino acids and activities of controlling enzymes was also investigated. Analysis of initial spatial IAA distribution in the cuttings revealed that approximately 40 and 10% of the total IAA pool was present in the leaves and the stem base as rooting zone, respectively. A negative correlation existed between leaf size and IAA concentration. After excision of cuttings, IAA showed an early increase in the stem base with two peaks at 2 and 24h post excision and, thereafter, a decline to low levels. This was mirrored by the expression pattern of the auxin-responsive GH3 gene. NPA treatment completely suppressed the 24-h peak of IAA and severely inhibited root formation. It also reduced activities of cell wall and vacuolar invertases in the early phase of AR formation and inhibited the rise of activities of glucose-6-phosphate dehydrogenase and phosphofructokinase during later stages. We propose a model in which spontaneous AR formation in Petunia cuttings is dependent on PAT and on the resulting 24-h peak of IAA in the rooting zone, where it induces early cellular events and also stimulates sink establishment. Subsequent root development stimulates glycolysis and the pentosephosphate pathway