An automatic translation scheme from prolog to the andorra kernel language

The Andorra family of languages (which includes the Andorra Kernel Language -AKL) is aimed, in principie, at simultaneously supporting the programming styles of Prolog and committed choice languages. On the other hand, AKL requires a somewhat detailed specification of control by the user. This could be avoided by programming in Prolog to run on AKL. However, Prolog programs cannot be executed directly on AKL. This is due to a number of factors, from more or less trivial syntactic differences to more involved issues such as the treatment of cut and making the exploitation of certain types of parallelism possible. This paper provides basic guidelines for constructing an automatic compiler of Prolog programs into AKL, which can bridge those differences. In addition to supporting Prolog, our style of translation achieves independent and-parallel execution where possible, which is relevant since this type of parallel execution preserves, through the translation, the user-perceived "complexity" of the original Prolog program.

An automatic translation scheme from CLP to AKL

The Andorra Kernel language scheme was aimed, in principle, at simultaneously supporting the programming styles of Prolog and committed choice languages. Within the constraint programming paradigm, this family of languages could also in principle support the concurrent constraint paradigm. This happens for the Agents Kernel Language (AKL). On the other hand, AKL requires a somewhat detailed specification of control by the user. This could be avoided by programming in CLP to run on AKL. However, CLP programs cannot be executed directly on AKL. This is due to a number of factors, from more or less trivial syntactic differences to more involved issues such as the treatment of cut and making the exploitation of certain types of parallelism possible. This paper provides a translation scheme which is a basis of an automatic compiler of CLP programs into AKL, which can bridge those differences. In addition to supporting CLP, our style of translation achieves independent and-parallel execution where possible, which is relevant since this type of parallel execution preserves, through the translation, the user-perceived "complexity" of the original program.

Herramienta basada en vistas para la generación automática de anotaciones de fuentes RDF

Durante los últimos años, el imparable crecimiento de fuentes de datos biomédicas, propiciado por el desarrollo de técnicas de generación de datos masivos (principalmente en el campo de la genómica) y la expansión de tecnologías para la comunicación y compartición de información ha propiciado que la investigación biomédica haya pasado a basarse de forma casi exclusiva en el análisis distribuido de información y en la búsqueda de relaciones entre diferentes fuentes de datos. Esto resulta una tarea compleja debido a la heterogeneidad entre las fuentes de datos empleadas (ya sea por el uso de diferentes formatos, tecnologías, o modelizaciones de dominios). Existen trabajos que tienen como objetivo la homogeneización de estas con el fin de conseguir que la información se muestre de forma integrada, como si fuera una única base de datos. Sin embargo no existe ningún trabajo que automatice de forma completa este proceso de integración semántica. Existen dos enfoques principales para dar solución al problema de integración de fuentes heterogéneas de datos: Centralizado y Distribuido. Ambos enfoques requieren de una traducción de datos de un modelo a otro. Para realizar esta tarea se emplean formalizaciones de las relaciones semánticas entre los modelos subyacentes y el modelo central. Estas formalizaciones se denominan comúnmente anotaciones. Las anotaciones de bases de datos, en el contexto de la integración semántica de la información, consisten en definir relaciones entre términos de igual significado, para posibilitar la traducción automática de la información. Dependiendo del problema en el que se esté trabajando, estas relaciones serán entre conceptos individuales o entre conjuntos enteros de conceptos (vistas). El trabajo aquí expuesto se centra en estas últimas. El proyecto europeo p-medicine (FP7-ICT-2009-270089) se basa en el enfoque centralizado y hace uso de anotaciones basadas en vistas y cuyas bases de datos están modeladas en RDF. Los datos extraídos de las diferentes fuentes son traducidos e integrados en un Data Warehouse. Dentro de la plataforma de p-medicine, el Grupo de Informática Biomédica (GIB) de la Universidad Politécnica de Madrid, en el cuál realicé mi trabajo, proporciona una herramienta para la generación de las necesarias anotaciones de las bases de datos RDF. Esta herramienta, denominada Ontology Annotator ofrece la posibilidad de generar de manera manual anotaciones basadas en vistas. Sin embargo, aunque esta herramienta muestra las fuentes de datos a anotar de manera gráfica, la gran mayoría de usuarios encuentran difícil el manejo de la herramienta , y pierden demasiado tiempo en el proceso de anotación. Es por ello que surge la necesidad de desarrollar una herramienta más avanzada, que sea capaz de asistir al usuario en el proceso de anotar bases de datos en p-medicine. El objetivo es automatizar los procesos más complejos de la anotación y presentar de forma natural y entendible la información relativa a las anotaciones de bases de datos RDF. Esta herramienta ha sido denominada Ontology Annotator Assistant, y el trabajo aquí expuesto describe el proceso de diseño y desarrollo, así como algunos algoritmos innovadores que han sido creados por el autor del trabajo para su correcto funcionamiento. Esta herramienta ofrece funcionalidades no existentes previamente en ninguna otra herramienta del área de la anotación automática e integración semántica de bases de datos. ---ABSTRACT---Over the last years, the unstoppable growth of biomedical data sources, mainly thanks to the development of massive data generation techniques (specially in the genomics field) and the rise of the communication and information sharing technologies, lead to the fact that biomedical research has come to rely almost exclusively on the analysis of distributed information and in finding relationships between different data sources. This is a complex task due to the heterogeneity of the sources used (either by the use of different formats, technologies or domain modeling). There are some research proyects that aim homogenization of these sources in order to retrieve information in an integrated way, as if it were a single database. However there is still now work to automate completely this process of semantic integration. There are two main approaches with the purpouse of integrating heterogeneous data sources: Centralized and Distributed. Both approches involve making translation from one model to another. To perform this task there is a need of using formalization of the semantic relationships between the underlying models and the main model. These formalizations are also calles annotations. In the context of semantic integration of the information, data base annotations consist on defining relations between concepts or words with the same meaning, so the automatic translation can be performed. Depending on the task, the ralationships can be between individuals or between whole sets of concepts (views). This paper focuses on the latter. The European project p-medicine (FP7-ICT-2009-270089) is based on the centralized approach. It uses view based annotations and RDF modeled databases. The data retireved from different data sources is translated and joined into a Data Warehouse. Within the p-medicine platform, the Biomedical Informatics Group (GIB) of the Polytechnic University of Madrid, in which I worked, provides a software to create annotations for the RDF sources. This tool, called Ontology Annotator, is used to create annotations manually. However, although Ontology Annotator displays the data sources graphically, most of the users find it difficult to use this software, thus they spend too much time to complete the task. For this reason there is a need to develop a more advanced tool, which would be able to help the user in the task of annotating p-medicine databases. The aim is automating the most complex processes of the annotation and display the information clearly and easy understanding. This software is called Ontology Annotater Assistant and this book describes the process of design and development of it. as well as some innovative algorithms that were designed by the author of the work. This tool provides features that no other software in the field of automatic annotation can provide.

Diseño, desarrollo y evaluación de sistemas de traducción automática para reducir las barreras de comunicación de las personas sordas

La principal aportación de esta tesis doctoral ha sido la propuesta y evaluación de un sistema de traducción automática que permite la comunicación entre personas oyentes y sordas. Este sistema está formado a su vez por dos sistemas: un traductor de habla en español a Lengua de Signos Española (LSE) escrita y que posteriormente se representa mediante un agente animado; y un generador de habla en español a partir de una secuencia de signos escritos mediante glosas. El primero de ellos consta de un reconocedor de habla, un módulo de traducción entre lenguas y un agente animado que representa los signos en LSE. El segundo sistema está formado por una interfaz gráfica donde se puede especificar una secuencia de signos mediante glosas (palabras en mayúscula que representan los signos), un módulo de traducción entre lenguas y un conversor texto-habla. Para el desarrollo del sistema de traducción, en primer lugar se ha generado un corpus paralelo de 7696 frases en español con sus correspondientes traducciones a LSE. Estas frases pertenecen a cuatro dominios de aplicación distintos: la renovación del Documento Nacional de Identidad, la renovación del permiso de conducir, un servicio de información de autobuses urbanos y la recepción de un hotel. Además, se ha generado una base de datos con más de 1000 signos almacenados en cuatro sistemas distintos de signo-escritura. En segundo lugar, se ha desarrollado un módulo de traducción automática que integra dos técnicas de traducción con una estructura jerárquica: la primera basada en memoria y la segunda estadística. Además, se ha implementado un módulo de pre-procesamiento de las frases en español que, mediante su incorporación al módulo de traducción estadística, permite mejorar significativamente la tasa de traducción. En esta tesis también se ha mejorado la versión de la interfaz de traducción de LSE a habla. Por un lado, se han incorporado nuevas características que mejoran su usabilidad y, por otro, se ha integrado un traductor de lenguaje SMS (Short Message Service – Servicio de Mensajes Cortos) a español, que permite especificar la secuencia a traducir en lenguaje SMS, además de mediante una secuencia de glosas. El sistema de traducción propuesto se ha evaluado con usuarios reales en dos dominios de aplicación: un servicio de información de autobuses de la Empresa Municipal de Transportes de Madrid y la recepción del Hotel Intur Palacio San Martín de Madrid. En la evaluación estuvieron implicadas personas sordas y empleados de los dos servicios. Se extrajeron medidas objetivas (obtenidas por el sistema automáticamente) y subjetivas (mediante cuestionarios a los usuarios). Los resultados fueron muy positivos gracias a la opinión de los usuarios de la evaluación, que validaron el funcionamiento del sistema de traducción y dieron información valiosa para futuras líneas de trabajo. Por otro lado, tras la integración de cada uno de los módulos de los dos sistemas de traducción (habla-LSE y LSE-habla), los resultados de la evaluación y la experiencia adquirida en todo el proceso, una aportación importante de esta tesis doctoral es la propuesta de metodología de desarrollo de sistemas de traducción de habla a lengua de signos en los dos sentidos de la comunicación. En esta metodología se detallan los pasos a seguir para desarrollar el sistema de traducción para un nuevo dominio de aplicación. Además, la metodología describe cómo diseñar cada uno de los módulos del sistema para mejorar su flexibilidad, de manera que resulte más sencillo adaptar el sistema desarrollado a un nuevo dominio de aplicación. Finalmente, en esta tesis se analizan algunas técnicas para seleccionar las frases de un corpus paralelo fuera de dominio para entrenar el modelo de traducción cuando se quieren traducir frases de un nuevo dominio de aplicación; así como técnicas para seleccionar qué frases del nuevo dominio resultan más interesantes que traduzcan los expertos en LSE para entrenar el modelo de traducción. El objetivo es conseguir una buena tasa de traducción con la menor cantidad posible de frases. ABSTRACT The main contribution of this thesis has been the proposal and evaluation of an automatic translation system for improving the communication between hearing and deaf people. This system is made up of two systems: a Spanish into Spanish Sign Language (LSE – Lengua de Signos Española) translator and a Spanish generator from LSE sign sequences. The first one consists of a speech recognizer, a language translation module and an avatar that represents the sign sequence. The second one is made up an interface for specifying the sign sequence, a language translation module and a text-to-speech conversor. For the translation system development, firstly, a parallel corpus has been generated with 7,696 Spanish sentences and their LSE translations. These sentences are related to four different application domains: the renewal of the Identity Document, the renewal of the driver license, a bus information service and a hotel reception. Moreover, a sign database has been generated with more than 1,000 signs described in four different signwriting systems. Secondly, it has been developed an automatic translation module that integrates two translation techniques in a hierarchical structure: the first one is a memory-based technique and the second one is statistical. Furthermore, a pre processing module for the Spanish sentences has been implemented. By incorporating this pre processing module into the statistical translation module, the accuracy of the translation module improves significantly. In this thesis, the LSE into speech translation interface has been improved. On the one hand, new characteristics that improve its usability have been incorporated and, on the other hand, a SMS language into Spanish translator has been integrated, that lets specifying in SMS language the sequence to translate, besides by specifying a sign sequence. The proposed translation system has been evaluated in two application domains: a bus information service of the Empresa Municipal de Transportes of Madrid and the Hotel Intur Palacio San Martín reception. This evaluation has involved both deaf people and services employees. Objective measurements (given automatically by the system) and subjective measurements (given by user questionnaires) were extracted during the evaluation. Results have been very positive, thanks to the user opinions during the evaluation that validated the system performance and gave important information for future work. Finally, after the integration of each module of the two translation systems (speech- LSE and LSE-speech), obtaining the evaluation results and considering the experience throughout the process, a methodology for developing speech into sign language (and vice versa) into a new domain has been proposed in this thesis. This methodology includes the steps to follow for developing the translation system in a new application domain. Moreover, this methodology proposes the way to improve the flexibility of each system module, so that the adaptation of the system to a new application domain can be easier. On the other hand, some techniques are analyzed for selecting the out-of-domain parallel corpus sentences in order to train the translation module in a new domain; as well as techniques for selecting which in-domain sentences are more interesting for translating them (by LSE experts) in order to train the translation model.

Automatic Categorization for Improving Spanish into Spanish Sign Language Machine Translation

This paper describes a preprocessing module for improving the performance of a Spanish into Spanish Sign Language (Lengua de Signos Espanola: LSE) translation system when dealing with sparse training data. This preprocessing module replaces Spanish words with associated tags. The list with Spanish words (vocabulary) and associated tags used by this module is computed automatically considering those signs that show the highest probability of being the translation of every Spanish word. This automatic tag extraction has been compared to a manual strategy achieving almost the same improvement. In this analysis, several alternatives for dealing with non-relevant words have been studied. Non-relevant words are Spanish words not assigned to any sign. The preprocessing module has been incorporated into two well-known statistical translation architectures: a phrase-based system and a Statistical Finite State Transducer (SFST). This system has been developed for a specific application domain: the renewal of Identity Documents and Driver's License. In order to evaluate the system a parallel corpus made up of 4080 Spanish sentences and their LSE translation has been used. The evaluation results revealed a significant performance improvement when including this preprocessing module. In the phrase-based system, the proposed module has given rise to an increase in BLEU (Bilingual Evaluation Understudy) from 73.8% to 81.0% and an increase in the human evaluation score from 0.64 to 0.83. In the case of SFST, BLEU increased from 70.6% to 78.4% and the human evaluation score from 0.65 to 0.82.

Automatic exploitation of non-determinate independent and-parallelism in the basic andorra model

Andorra-I is the first implementation of a language based on the Andorra Principie, which states that determinate goals can (and shonld) be run before other goals, and even in a parallel fashion. This principie has materialized in a framework called the Basic Andorra model, which allows or-parallelism as well as (dependent) and-parallelism for determinate goals. In this report we show that it is possible to further extend this model in order to allow general independent and-parallelism for nondeterminate goals, withont greatly modifying the underlying implementation machinery. A simple an easy way to realize such an extensión is to make each (nondeterminate) independent goal determinate, by using a special "bagof" constract. We also show that this can be achieved antomatically by compile-time translation from original Prolog programs. A transformation that fulfüls this objective and which can be easily antomated is presented in this report.

Automatic motion compensation of free breathing acquired myocardial perfusion data by using independent component analysis

Images acquired during free breathing using first-pass gadolinium-enhanced myocardial perfusion magnetic resonance imaging (MRI) exhibit a quasiperiodic motion pattern that needs to be compensated for if a further automatic analysis of the perfusion is to be executed. In this work, we present a method to compensate this movement by combining independent component analysis (ICA) and image registration: First, we use ICA and a time?frequency analysis to identify the motion and separate it from the intensity change induced by the contrast agent. Then, synthetic reference images are created by recombining all the independent components but the one related to the motion. Therefore, the resulting image series does not exhibit motion and its images have intensities similar to those of their original counterparts. Motion compensation is then achieved by using a multi-pass image registration procedure. We tested our method on 39 image series acquired from 13 patients, covering the basal, mid and apical areas of the left heart ventricle and consisting of 58 perfusion images each. We validated our method by comparing manually tracked intensity profiles of the myocardial sections to automatically generated ones before and after registration of 13 patient data sets (39 distinct slices). We compared linear, non-linear, and combined ICA based registration approaches and previously published motion compensation schemes. Considering run-time and accuracy, a two-step ICA based motion compensation scheme that first optimizes a translation and then for non-linear transformation performed best and achieves registration of the whole series in 32 ± 12 s on a recent workstation. The proposed scheme improves the Pearsons correlation coefficient between manually and automatically obtained time?intensity curves from .84 ± .19 before registration to .96 ± .06 after registration