Caracterización y simulación de arborizaciones dentríticas con redes bayesianas incluyendo variables angulares

El funcionamiento interno del cerebro es todavía hoy en día un misterio, siendo su comprensión uno de los principales desafíos a los que se enfrenta la ciencia moderna. El córtex cerebral es el área del cerebro donde tienen lugar los procesos cerebrales de más alto nivel, cómo la imaginación, el juicio o el pensamiento abstracto. Las neuronas piramidales, un tipo específico de neurona, suponen cerca del 80% de los cerca de los 10.000 millones de que componen el córtex cerebral, haciendo de ellas un objetivo principal en el estudio del funcionamiento del cerebro. La morfología neuronal, y más específicamente la morfología dendrítica, determina cómo estas procesan la información y los patrones de conexión entre neuronas, siendo los modelos computacionales herramientas imprescindibles para el estudio de su rol en el funcionamiento del cerebro. En este trabajo hemos creado un modelo computacional, con más de 50 variables relativas a la morfología dendrítica, capaz de simular el crecimiento de arborizaciones dendríticas basales completas a partir de reconstrucciones de neuronas piramidales reales, abarcando desde el número de dendritas hasta el crecimiento los los árboles dendríticos. A diferencia de los trabajos anteriores, nuestro modelo basado en redes Bayesianas contempla la arborización dendrítica en su conjunto, teniendo en cuenta las interacciones entre dendritas y detectando de forma automática las relaciones entre las variables morfológicas que caracterizan la arborización. Además, el análisis de las redes Bayesianas puede ayudar a identificar relaciones hasta ahora desconocidas entre variables morfológicas. Motivado por el estudio de la orientación de las dendritas basales, en este trabajo se introduce una regularización L1 generalizada, aplicada al aprendizaje de la distribución von Mises multivariante, una de las principales distribuciones de probabilidad direccional multivariante. También se propone una distancia circular multivariante que puede utilizarse para estimar la divergencia de Kullback-Leibler entre dos muestras de datos circulares. Comparamos los modelos con y sin regularizaci ón en el estudio de la orientación de la dendritas basales en neuronas humanas, comprobando que, en general, el modelo regularizado obtiene mejores resultados. El muestreo, ajuste y representación de la distribución von Mises multivariante se implementa en un nuevo paquete de R denominado mvCircular.---ABSTRACT---The inner workings of the brain are, as of today, a mystery. To understand the brain is one of the main challenges faced by current science. The cerebral cortex is the region of the brain where all superior brain processes, like imagination, judge and abstract reasoning take place. Pyramidal neurons, a specific type of neurons, constitute approximately the 80% of the more than 10.000 million neurons that compound the cerebral cortex. It makes the study of the pyramidal neurons crucial in order to understand how the brain works. Neuron morphology, and specifically the dendritic morphology, determines how the information is processed in the neurons, as well as the connection patterns among neurons. Computational models are one of the main tools for studying dendritic morphology and its role in the brain function. We have built a computational model that contains more than 50 morphological variables of the dendritic arborizations. This model is able to simulate the growth of complete dendritic arborizations from real neuron reconstructions, starting with the number of basal dendrites, and ending modeling the growth of dendritic trees. One of the main diferences between our approach, mainly based on the use of Bayesian networks, and other models in the state of the art is that we model the whole dendritic arborization instead of focusing on individual trees, which makes us able to take into account the interactions between dendrites and to automatically detect relationships between the morphologic variables that characterize the arborization. Moreover, the posterior analysis of the relationships in the model can help to identify new relations between morphological variables. Motivated by the study of the basal dendrites orientation, a generalized L1 regularization applied to the multivariate von Mises distribution, one of the most used distributions in multivariate directional statistics, is also introduced in this work. We also propose a circular multivariate distance that can be used to estimate the Kullback-Leibler divergence between two circular data samples. We compare the regularized and unregularized models on basal dendrites orientation of human neurons and prove that regularized model achieves better results than non regularized von Mises model. Sampling, fitting and plotting functions for the multivariate von Mises are implemented in a new R packaged called mvCircular.

Expansión supervisada de léxicos polarizados adaptable al contexto

El análisis de opiniones es un área en la cual múltiples disciplinas han otorgado diferentes enfoques para elaborar modelos que sean capaces de extraer la polaridad de los textos analizados. En función del dominio o categoría del texto analizado, donde ejemplos de categorías son Deportes o Banca, estos modelos deben ser modificados para obtener un análisis de opinión de calidad. En esta tesis se presenta un modelo que pretende elaborar un análisis de opiniones independiente de la categoría a analizar y un extenso estado del arte sobre análisis de opiniones. Se propone un enfoque cuantitativo que haría uso de un léxico polarizado semilla como único recurso cualitativo del modelo. El enfoque propuesto hace uso de un corpus anotado de textos por polaridad y categoría y el léxico polarizado semilla para producir un modelo capaz de elaborar un análisis de opinión de calidad en las distintas categorías analizadas y expandir el léxico polarizado semilla con términos que se adecúan a las categorías procesadas.---ABSTRACT---Sentiment analysis is an area in which multiple disciplines have given diferent approaches to make models that are able to extract the polarity of the analyzed texts. Depending on the domain or category of the analyzed text, where examples of categories are Sports or Banking, these models should be modified to obtain a good opinion analysis. This thesis presents a model that aims to develop a category independent opinion analysis model and a extensive sentiment analysis state of the art. A quantitative approach is proposed that will use a polarized lexicon as the only qualitative resource. The proposed approach uses an annotated corpus by polarity and category and a polarized lexicon seed to produce a model able to develop a good opinion analysis in the various categories analyzed and to expand the polarized lexicon seed with terms that fit the processed categories.

Systematizing requirements elicitation technique selection

Context: This research deals with requirements elicitation technique selection for software product requirements and the overselection of open interviews. Objectives: This paper proposes and validates a framework to help requirements engineers select the most adequate elicitation techniques at any time. Method: We have explored both the existing underlying theory and the results of empirical research to build the framework. Based on this, we have deduced and put together justified proposals about the framework components. We have also had to add information not found in theoretical or empirical sources. In these cases, we drew on our own experience and expertise. Results: A new validated approach for requirements technique selection. This new approach selects tech- niques other than open interview, offers a wider range of possible techniques and captures more require- ments information. Conclusions: The framework is easily extensible and changeable. Whenever any theoretical or empirical evidence for an attribute, technique or adequacy value is unearthed, the information can be easily added to the framework.

Evidence of the presence of bias in subjective metrics: analysis within a family of experiments

Context: Measurement is crucial and important to empirical software engineering. Although reliability and validity are two important properties warranting consideration in measurement processes, they may be influenced by random or systematic error (bias) depending on which metric is used. Aim: Check whether, the simple subjective metrics used in empirical software engineering studies are prone to bias. Method: Comparison of the reliability of a family of empirical studies on requirements elicitation that explore the same phenomenon using different design types and objective and subjective metrics. Results: The objectively measured variables (experience and knowledge) tend to achieve more reliable results, whereas subjective metrics using Likert scales (expertise and familiarity) tend to be influenced by systematic error or bias. Conclusions: Studies that predominantly use variables measured subjectively, like opinion polls or expert opinion acquisition.

Elicitación de probabilidades difusas

En este trabajo exponemos un método interactivo cuyo objetivo es extraer de los expertos un número difuso que indique la probabilidad subjetiva de un suceso. Este método, basado en los clásicos métodos de apuestas y loterías para la elicitación de probabilidades, evita el uso de escalas de términos lingüísticos representados por números difusos con amplitud de soporte y simetría previamente establecidos, permitiendo a cada experto una mayor o menor precisión y libertad en el establecimiento de sus juicios probabilísticos. Además, establecemos una función que mide la calidad del juicio probabilístico expresado mediante la agregación de dos componentes que miden la coherencia y la precisión mostrada por el experto durante el proceso de educción.

An Ant Colony System adaptation to deal with accessibility issues after a disaster

One of the main problems relief teams face after a natural or man-made disaster is how to plan rural road repair work tasks to take maximum advantage of the limited available financial and human resources. Previous research focused on speeding up repair work or on selecting the location of health centers to minimize transport times for injured citizens. In spite of the good results, this research does not take into account another key factor: survivor accessibility to resources. In this paper we account for the accessibility issue, that is, we maximize the number of survivors that reach the nearest regional center (cities where economic and social activity is concentrated) in a minimum time by planning which rural roads should be repaired given the available financial and human resources. This is a combinatorial problem since the number of connections between cities and regional centers grows exponentially with the problem size, and exact methods are no good for achieving an optimum solution. In order to solve the problem we propose using an Ant Colony System adaptation, which is based on ants? foraging behavior. Ants stochastically build minimal paths to regional centers and decide if damaged roads are repaired on the basis of pheromone levels, accessibility heuristic information and the available budget. The proposed algorithm is illustrated by means of an example regarding the 2010 Haiti earthquake, and its performance is compared with another metaheuristic, GRASP.

A Fuzzy approach based on dynamic programming and metaheuristics for selecting safeguards for risk management for information systems

In this paper we focus on the selection of safeguards in a fuzzy risk analysis and management methodology for information systems (IS). Assets are connected by dependency relationships, and a failure of one asset may affect other assets. After computing impact and risk indicators associated with previously identified threats, we identify and apply safeguards to reduce risks in the IS by minimizing the transmission probabilities of failures throughout the asset network. However, as safeguards have associated costs, the aim is to select the safeguards that minimize costs while keeping the risk within acceptable levels. To do this, we propose a dynamic programming-based method that incorporates simulated annealing to tackle optimizations problems.

Dominance measuring methods within MAVT/MAUT with imprecise information concerning decision-makers'preferences

Dominance measuring methods are an approach for dealing with complex decision-making problems with imprecise information within multi-attribute value/utility theory. These methods are based on the computation of pairwise dominance values and exploit the information in the dominance matrix in different ways to derive measures of dominance intensity and rank the alternatives under consideration. In this paper we review dominance measuring methods proposed in the literature for dealing with imprecise information (intervals, ordinal information or fuzzy numbers) about decision-makers? preferences and their performance in comparison with other existing approaches, like SMAA and SMAA-II or Sarabando and Dias? method.

Fuzzy MCDA for remediation of a uranium tailing

The Pridneprovsky Chemical Plant was a largest uranium processing enterprises, producing a huge amount of uranium residues. The Zapadnoe tailings site contains the majority of these residues. We propose a theoretical framework based on Multi-Criteria Decision Analysis and fuzzy logic to analyse different remediation alternatives for the Zapadnoe tailings, in which potentially conflicting economic, radiological, social and environmental objectives are simultaneously taken into account. An objective hierarchy is built that includes all the relevant aspects. Fuzzy rather than precise values are proposed for use to evaluate remediation alternatives against the different criteria and to quantify preferences, such as the weights representing the relative importance of criteria identified in the objective hierarchy. Finally, it is proposed that remediation alternatives should be evaluated by means of a fuzzy additive multi-attribute utility function and ranked on the basis of the respective trapezoidal fuzzy number representing their overall utility.

Desarrollo de software sobre entornos PaaS: revisión general, nuevas perspectivas y desafíos para la ingeniería de software

El uso de la computación en la nube ofrece un nuevo paradigma que procura proporcionar servicios informáticos para los cuales no es necesario contar con grandes infraestructuras y sobre todo, con las complejidades de costos, seguridad y mantenimiento implícitas. Si bien se ha posicionado en los últimos años como una plataforma innovadora en el ámbito de la tecnología de consumo masivo y organizacional, también puede ser tópico de investigación importante en ciertas áreas de interés como el desarrollo de Software, presentando en ese campo, una serie de ventajas y retos estimulantes que pueden ser explorados. Este trabajo de investigación, sigue con dicho sentido, el objetivo de exponer la situación actual sobre el empleo de la computación en la nube como entorno de desarrollo de Software, sectorizando a través de su capa PaaS, el modelo conceptual de trabajo, las perspectivas recientes, problemas e implicaciones generales del uso de ésta como herramienta plausible en proyectos de desarrollo de Software. El análisis de los diferentes temas abordados, tiene la intención en general, de proporcionar información objetiva, crítica y cuantitativa sobre la concentración de la investigación relacionada a PaaS, así como un marco de interpretación reciente que aporte una perspectiva referencial para futuras investigaciones asociadas.---ABSTRACT---The use of cloud computing offers a new paradigm to provide computer services for which it is not necessary to have large infrastructure and especially with the complexities of cost, safety and maintenance implied. While it has positioned itself in recent years as an innovative platform in the field of technology and massive organizational consumption, can also be an important research topic in certain areas of interest including, the development of Software, presenting in this field, a series of advantages, disadvantages and stimulating challenges that can be explored. This research, following with that sense, try to present the current situation related to the use of cloud computing as a software development environment, through its sectorized PaaS layer, showing the conceptual working model, actual perspectives, problems and general implications of using this as a possible tool in Software development projects. The analysis of the different topics covered, intends in a general form, provide objective, critical and quantitative information about the concentration of research related to PaaS, and a recent interpretation framework to provide a referential perspective for future related researches.

A systematic mapping study on testing technique experiments: has the situation changed since 2000?

Context: Empirical Software Engineering (ESE) replication researchers need to store and manipulate experimental data for several purposes, in particular analysis and reporting. Current research needs call for sharing and preservation of experimental data as well. In a previous work, we analyzed Replication Data Management (RDM) needs. A novel concept, called Experimental Ecosystem, was proposed to solve current deficiencies in RDM approaches. The empirical ecosystem provides replication researchers with a common framework that integrates transparently local heterogeneous data sources. A typical situation where the Empirical Ecosystem is applicable, is when several members of a research group, or several research groups collaborating together, need to share and access each other experimental results. However, to be able to apply the Empirical Ecosystem concept and deliver all promised benefits, it is necessary to analyze the software architectures and tools that can properly support it.

Topic selection in industry experiments

This paper shares our experience with initial negotiation and topic elicitation process for conducting industry experiments in six software development organizations in Finland. The process involved interaction with company representatives in the form of both multiple group discussions and separate face-to-face meetings. Fitness criteria developed by researchers were applied to the list of generated topics to decide on a common topic. The challenges we faced include diversity of proposed topics, communication gaps, skepticism about research methods, initial disconnect between research and industry needs, and lack of prior work relationship. Lessons learned include having enough time to establish trust with partners, importance of leveraging the benefits of training and skill development that are inherent in the experimental approach, uniquely positioning the experimental approach within the landscape of other validation approaches more familiar to industrial partners, and introducing the fitness criteria early in the process.

MedVir: an interactive representation system of multidimensional medical data applied to Traumatic Brain Injury's rehabilitation prediction

Clinicians could model the brain injury of a patient through his brain activity. However, how this model is defined and how it changes when the patient is recovering are questions yet unanswered. In this paper, the use of MedVir framework is proposed with the aim of answering these questions. Based on complex data mining techniques, this provides not only the differentiation between TBI patients and control subjects (with a 72% of accuracy using 0.632 Bootstrap validation), but also the ability to detect whether a patient may recover or not, and all of that in a quick and easy way through a visualization technique which allows interaction.

Linked Data for sharing, discovery and re-use of Language Resources at a Web scale

Conferencia por invitación, impartida el 31 d mayo de 2014 en el Workshop on Language Technology Service Platforms: Synergies, Standards, Sharing at LREC2014

Veto values in Group Decision Making within MAUT: aggregating complete rankings derived from dominance intensity measures

We consider a groupdecision-making problem within multi-attribute utility theory, in which the relative importance of decisionmakers (DMs) is known and their preferences are represented by means of an additive function. We allow DMs to provide veto values for the attribute under consideration and build veto and adjust functions that are incorporated into the additive model. Veto functions check whether alternative performances are within the respective veto intervals, making the overall utility of the alternative equal to 0, where as adjust functions reduce the utilty of the alternative performance to match the preferences of other DMs. Dominance measuring methods are used to account for imprecise information in the decision-making scenario and to derive a ranking of alternatives for each DM. Specifically, ordinal information about the relative importance of criteria is provided by each DM. Finally, an extension of Kemeny's method is used to aggregate the alternative rankings from the DMs accounting for the irrelative importance.