Uncertainties in the design of support structures and foundations for offshore wind turbines

Offshore wind industry has exponentially grown in the last years. Despite this growth, there are still many uncertainties in this field. This paper analyzes some current uncertainties in the offshore wind market, with the aim of going one step further in the development of this sector. To do this, some already identified uncertainties compromising offshore wind farm structural design have been identified and described in the paper. Examples of these identified uncertainties are the design of the transition piece and the difficulties for the soil properties characterization. Furthermore, this paper deals with other uncertainties not identified yet due to the limited experience in the sector. To do that, current and most used offshore wind standards and recommendations related to the design of foundation and support structures (IEC 61400-1, 2005; IEC 61400-3, 2009; DNV-OS-J101, Design of Offshore Wind Turbine, 2013 and Rules and Guidelines Germanischer Lloyd, WindEnergie, 2005) have been analyzed. These new identified uncertainties are related to the lifetime and return period, loads combination, scour phenomenon and its protection, Morison e Froude Krilov and diffraction regimes, wave theory, different scale and liquefaction. In fact, there are a lot of improvements to make in this field. Some of them are mentioned in this paper, but the future experience in the matter will make it possible to detect more issues to be solved and improved.

Aplicación de distintas metodologías a la monitorización de la humedad del suelo y al cálculo del balance hídrico diario

Dada la importancia de conocer la humedad del suelo de forma precisa y en tiempo real, se ha realizado este trabajo de investigación cuyo objetivo principal ha sido seleccionar un Balance Hídrico del Suelo (BHS) diario y validar sus estimaciones de humedad del suelo frente a medidas obtenidas “in situ”, aplicándolo a tres emplazamientos seleccionados en la zona centro con características edáficas y climáticas diferentes, y de este modo estimar con cierta precisión la humedad del suelo como Agua Disponible (AD) para las plantas y a su vez permitir la realización de estudios climáticos. Los observatorios meteorológicos seleccionados fueron: Guadalajara/El Serranillo en la zona aluvial del río Henares; Colmenar Viejo/Base Famet en la rampa sur del Guadarrama sobre rocas metamórficas; y Radiosondeo/Madrid(Barajas) en arenas arcósicas de grano grueso. Se realizó una caracterización morfológica y un estudio de las propiedades físicas, químicas e hidrofísicas de los suelos en cada emplazamiento. El suelo de Guadalajara, Xerorthent Típico presenta una secuencia genética de horizontes (Ap-AC-C1-C2) siendo su clase textural entre franco-arenosa a franca, con menos del 2% de elementos gruesos, presencia de caliza a lo largo de todo el perfil, destacando la homogeneidad en vertical y horizontal de sus propiedades. El suelo de Colmenar, Xerorthent Dystrico, presenta una secuencia genética de horizontes (A-C-C/R) apareciendo el horizonte C/R entre 20-30 cm; y la roca aproximadamente a unos 30 cm; destacando en este perfil su acidez y el alto contenido de elementos gruesos. El suelo de Radiosondeo, Haploxeralf Típico, presenta la secuencia normal de horizontes de los alfisoles (A-Bt1-Bt2-C/Bt); destacando su heterogeneidad principalmente en el plano horizontal, con presencia del Bt a diferentes profundidades en un corto espacio longitudinal. En una primera fase de experimentación (2007-2008) se seleccionaron BHS diarios que sólo utilizaban como datos de entrada la información de variables meteorológicas y el valor del Agua Disponible Total (ADT) para cada tipo de suelo y profundidad. Se probaron BHS diarios con agotamiento exponencial y directo de la reserva, utilizando la evapotranspiración de referencia de Penman-Monteith recomendada por FAO. Al mismo tiempo que se disponía de los datos estimados de humedad de suelo mediante diferentes BHS diarios en los tres emplazamientos, también se realizó una monitorización de la humedad del suelo “in situ” mediante el método gravimétrico, con adaptación de dicha metodología a la problemática de cada suelo, para determinar en cada fecha tanto la humedad del suelo como su contenido de AD para una profundidad de 0 a 30 cm. Se tomaron en cada fecha de muestreo 5 muestras para la profundidad 0- 10 cm, otras cinco para 10-20 cm y otras cinco para 20-30 cm, realizándose el correspondiente tratamiento estadístico de los datos. El ADT se calculó a partir de los datos de capacidad de campo y punto de marchitez obtenidos en laboratorio con membrana de Richards. Los resultados de esta primera fase permitieron conocer que el BHS exponencial diario era el que mejor estimaba el AD en Guadalajara considerando la capacidad de campo a una presión de 33 kPa, mientras que en Colmenar se debían considerar para un mejor ajuste, 10 kPa en lugar de 33 kPa. En el observatorio de Radiosondeo debido a que en cada fecha de muestreo la profundidad en la que aparecía el horizonte Bt era diferente, no se pudo demostrar si el BHS exponencial diario tenía un buen comportamiento. En una segunda fase de experimentación (2009-2012) y con el objeto de aminorar los problemas encontrados en Radiosondeo para la medida de humedad del suelo por el método gravimétrico, se procedió a la instalación y utilización de diferentes sensores de medida de humedad de suelo en el mismo observatorio: TDR (time domain reflectometry - TRIME T3 de IMKO); FDR capacitivo (frecuency domain reflectometry - ECH2O EC-20 de DECAGON) y otros. Esta segunda fase de experimentación tuvo una duración de 4 años y se compararon las medidas de humedad de suelo obtenidas a partir de los sensores con las estimadas del BHS exponencial hasta una profundidad de 0 a 85 cm. En laboratorio se realizaron calibraciones específicas de los sensores TDR y FDR para cada uno de los horizontes más diferenciados del Haploxeralf Típico, utilizando diferentes tipos de regresión. Los valores de humedad de suelo con el equipo TDR, corregidos mediante la calibración específica de laboratorio, fueron los que más se ajustaron a las medidas realizadas por método gravimétrico “in situ”, por lo que se utilizó el TDR para las comparaciones con los valores obtenidos del BHS exponencial diario durante los cuatro años de esta segunda fase experimental. Se realizaron diferentes estimaciones del ADT, partiendo de datos de laboratorio y/o de datos procedentes de humedad de los sensores en campo. Los resultados mostraron de nuevo la conveniencia de utilizar el BHS exponencial diario, pero en este caso, con la estimación del ADT realizada a partir de las gráficas de los sensores. Mediante la utilización de los datos de humedad del BHS exponencial diario se han realizado comparaciones con el mismo tipo de balance pero utilizando un periodo semanal o mensual en lugar de diario, para conocer las diferencias. Los valores obtenidos con periodicidad mensual han dado valores de AD inferiores a los balances calculados semanalmente o diariamente. Por último se ha comprobado que los resultados de un BHS exponencial diario pueden complementar la información que se obtiene del Índice de Precipitación Estandarizado (SPI) y pueden mejorar el estudio de la sequía agrícola. ABSTRACT Due to the importance of a better knowledge of soil water at real time and in a more precisely way, this research work has being carried out with the main objective of selecting a daily Soil Water Balance (SWB) to estimate soil water content, and validate it in comparison to “in situ” measurements. Three locations, differing in soil and climate characteristics, were selected in central Spain in order to estimate with certain acuity soil water as plant-Available Water (AW) and to serve as a tool for the climatic studies. The selected places near meteorology stations were: Guadalajara/El Serranillo an alluvium of the Henares watershed; Colmenar Viejo/Base Famet, in the south raised area of the Guadarrama river basin, over metamorphic rocks; and Radiosondeo/Madrid (Barajas) in coarse arkosic sandstone. Morphology characterization, physical, chemical and hydrologic soil properties were studied in each area. In Guadalajara the soil is a Typic Xerorthent with a (Ap-AC-C1- C2) genetic horizon sequence, loam-sandy to loam textural class, less than 2% of rock fragments, presence of equivalent CaCO3 through the whole profile, outstanding the vertical and horizontal homogeneity of the properties. In Colmenar the soil is represented by a Dystric Xerorthent with a (A-C-C/R) genetic horizon sequence, the C/R is 20-30 cm deep where rock outcrops are approximately at 30 cm; a characteristic feature of this profile is its high acidity and high rock fragments content. In Radiosondeo the soil is represented by a Typic Haploxeralf, with the usual alfisol genetic horizon sequence (A-Bt1-Bt2-C/Bt); outstanding its horizontal heterogeneity, “the variability of the Bt (clay enriched horizon) depth in short distances”. In a first experimental stage (2007-2008), the daily SWB chosen was that which only uses as input data the information from the meteorology variables and plant-Total Available Water (TAW) for each soil type and depth. Different daily SWB (with exponential or direct plant-Available Water depletion) were applied, using the Penman- Monteith reference evapotranspiration (ETo) recommended by FAO. At the same time as soil water content was estimated from the different daily SWB at the three locations, also soil water content was being monitored by “in situ” gravimetric methodology, adapting it to each soil characteristic, to determine every time soil water content and AW to a depth of 0 to 30 cm. In each sampling date, 5 samples for each depth were taken: 0-10 cm; 10-20 cm and 20-30 cm and the data were submitted to the corresponding statistical analysis. The TAW was calculated based on field capacity (FC) and permanent wilting point (PWP) data obtained from laboratory by the Richards pressure plate. Results from this first experimental stage show that the daily exponential SWB was the one which better estimated the AW in Guadalajara considering field capacity at -33 kPa, though in Colmenar, field capacity at -10 kPa must be considered instead of -33 kPa for a better estimation. In Radiosondeo due to the fact that the Bt horizon depth varied in different sampling dates, it could not be established if the daily exponential SWB had a good performance. In a second experimental stage (20019-2012) and with the objective of minimizing the problems encountered in Radiosondeo for measuring “in situ” soil water content by the gravimetric method, the installation of different sensors for measuring soil water content were established and used in the same field location: TDR (time domain reflectometry - TRIME T3 from IMKO), capacitance FDR (frecuency domain reflectometry - ECH2O EC-20 from DECAGON) and others. This second experimental stage lasted 4 years in order to compare the soil water measures from the sensors with the estimations by the exponential SWB form 0 to 85 cm soil depths. At laboratory, specific calibrations for TDR and FDR sensors of the Typic Haploxeralf more differentiated horizons were done using different types of regressions. The results showed that soil water data obtained by the TDR equipment, corrected by the specific laboratory calibration, best fitted to “in situ” gravimetric soil water measures. In this way TDR was used for comparing to the daily exponential SWB during the four years of this second experimentation stage. Various estimations for obtaining TAW were tested; based on laboratory data – and/or on the data obtained of the soil water content field sensors. Results confirmed again, the convenience of using the daily exponential SWB, though in this case, with the TAW obtained from the field sensors graphics. Soil water estimated by exponential SWB on daily basis was compared to weekly and monthly periods, in order to know their reliability. The results obtained for a monthly period gave less AW than the ones obtained in a weekly or daily period. Finally it has been proved that the results obtained from the exponential SWB in a daily bases can be used as a useful tool in order to give complementary information to the SPI (Precipitation Standardized Index) and to help in agricultural drought studies.

Bioaccesibilidad de elementos traza en suelos de parques infantiles. Aplicación al análisis de riesgo

En este trabajo doctoral se evaluó la bioaccesibilidad in vitro para As, Co, Cr, Cu, Ni, Pb y Zn (en la fracción menor de 100μm) por tres procedimientos distintos en 32 muestras de suelo superficial, recogidas en 16 parques infantiles de la ciudad de Madrid.. Dos de los métodos de extracción (SBET y extracción con HCl a pH=1.5) reproducen únicamente la fase gástrica, mientras que otro (RIVM) tiene en cuenta un proceso completo de digestión (gástrico+intestinal). La bioaccesibilidad (%) se definió frente a las concentraciones pseudototales de los elementos traza estudiados (agua regia), utilizando un modelo de regresión lineal pasando por el origen. Los dos métodos gástricos ofrecieron resultados similares y consistentes con datos de otros estudios, siendo el orden de bioaccesibilidad As ≈ Cu ≈ Pb ≈ Zn > Co > Ni > Cr, con rangos entre el 63 y el 7%. Para el procedimiento RIVM (gástrico + intestinal) se obtuvieron valores de un orden similar a los obtenidos en fase gástrica para los elementos As, Cu, Pb y Zn (muy similares para el Zn, algo superiores para Cu y Pb, y algo inferiores para As). Por el contrario, la bioaccesibilidad de Co y Cu es, en este caso, muy superior a la resultante de los ensayos en fase gástrica. El orden de bioaccesibilidad es Co ≈ Cu ≈ Pb > As ≈ Cr ≈ Zn, con rangos entre el 42 y el 69%. Los resultados de los tres procedimientos evaluados correlacionan muy intensamente para los elementos traza As, Cu, Pb y Zn, existiendo intensas correlaciones entre casi todos los elementos estudiados para las dos fases gástricas, no siendo así en el ensayo de digestión completa. Se estudiaron algunas propiedades físico-químicas de los suelos muestreados, así como su composición en algunos elementos mayoritarios con el objeto de evaluar su influencia sobre la bioaccesibilidad. Se observa una dependencia de la bioaccesibilidad (%) de distintos elementos respecto a algunas propiedades de los suelos estudiados, tales como: contenido en Fe, Ca (carbonatos) y P, materia orgánica y pH. El contenido en Fe resulta ser muy relevante en cuanto a la bioaccesibilidad obtenida. En todos los casos correlaciona negativamente con el porcentaje de bioaccesibilidad siendo más significativo este fenómeno en el caso de las extracciones en fase gástrica. Se sugiere que dada la baja solubilización de los óxidos de hierro en los medios extractantes empleados hay una fuerte adsorción de complejos aniónicos (metal-anión cloruro) sobre la superficie de estos óxidos de Fe, con la consiguientes disminución de la bioaccesibilidad. En cuanto al contenido en calcio (carbonatos) este dato parece muy relevante si nos referimos a la bioaccesibilidad del As. Efectivamente el As aparece ligado al Ca del suelo y su solubilización en medios ácidos implicaría un aumento de la bioaccesibilidad del As, mientras que su precipitación al pasar a pH básico (fase intestinal) provocaría una disminución de la bioaccesibilidad. La materia orgánica sólo se ha demostrado relevante respecto a los contenidos pseudototales para el Zn. Para el porcentaje de bioaccesibilidad es significativo para muchos elementos en los ensayos en fase gástrica. La influencia del pH de los suelos estudiados sólo parece ser muy significativo en el caso del Cr. Los valores altamente homogéneos del pH de los suelos estudiados sin duda hacen que este parámetro no resulte significativo para más elementos, tal como se desprende de estudios anteriores. ABSTRACT A total of 32 samples of superficial soil were collected from 16 playground areas in Madrid. The in vitro bioaccessibility of As, Co, Cr, Ni, Pb and Zn (fraction below 100μm) was evaluated by means of three extraction processes. Two of them (SBET and HCl-extraction, pH=1.5) simulate the gastric enviroment, while the other one (RIVM) reproduces a gastric+intestinal digestion sequence. Bioaccessibility (%) was compared against pseudo-total concentrations of trace elements studied (aqua regia) with a linear regression model (forced to intercept the origin) Both gastric methods offered very similar and consistent results with data from other studies, with bioaccessibilities following the order: As ≈ Cu ≈ Pb ≈ Zn > Co > Ni > Cr, and ranging from 63% to 7% The values obtained through RIVM (gastric+ intestinal) method are similar to those obtained in gastric environment for elements: As, Cu, Pb and Zn (very similar to Zn, to a higher extent Cu and Pb, and to a lower extent As). On the contrary the bioaccessibility obtained for elements Co and Cu is considerable higher than in gastric environment sequence. Bioaccessibilities follows the order Co ≈ Cu ≈ Pb >As ≈ Cr ≈ Zn, ranging between 42 and 69%. The three procedures used correlate very intensively to trace elements As,Cu, Pb and Zn, existing strong correlations between almost all elements studied for the two gastric environment, not in the case of the complete digestion sequence. Some soil physical – chemical properties selected were studied, as well as their composition in some main elements in order to assess their influence on bioaccessibility. A dependence was observed between different elements bioaccesibility (%) and some soil properties, such as: Fe, Ca (carbonate) content and P, organic matter and pH. Fe content becomes very relevant regarding the bioaccessibility obtained. In all cases it correlated negatively with bioaccessibility percentage being more significant this phenomenon in gastric environment extractions. It is suggested that given the low solubility of iron oxide in the extractant media used there has to be a strong adsorption of anionic complexes (metal – chloride anion) on these Fe oxides surface, with a consequent decrease of bioaccessibility. Regarding calcium (carbonate) content this data seems very relevant referred to As bioaccessibility. Indeed, As appears to be bound to soil Ca and its solubilisation in acid media would increase As bioaccessibility, while its precipitation at basic pH (intestinal environment) would cause a reduction in bioaccessibility. The influence of organic matter only seemed significant for Zn “total” content, while it is significant in terms of gastric bioaccessibility for many elements. Soil pH only seems to be very significant in case of Cr. The highly homogeneous values for soil pH makes the influence of this parameter negligible for the other elements, unlike what has been observed in several previous studies.

Water use efficiency and water productivity in the Spanish irrigation district ¿Río Adaja?

A study of the assessment of the irrigation water use has been carried out in the Spanish irrigation District “Río Adaja” that has analyzed the water use efficiency and the water productivity indicators for the main crops for three years: 2010-2011, 2011-2012 and 2012-2013. A soil water balance model was applied taking into ccount climatic data for the nearby weather station and soil properties. Crop water requirements were calculated by the FAO Penman- Monteith with the application of the dual crop coefficient and by considering the readily vailable soil water content (RAW) concept. Likewise, productivity was measured by the indexes: annual relative irrigation supply (ARIS), annual relative water supply (ARWS), relative rainfall supply (RRS), the water productivity (WP), the evapotranspiration water productivity (ETWP), and the irrigation water productivity (IWP. The results show that in most crops deficit irrigation was applied (ARIS<1) in the first two years however, the IWP improved. This was higher in 2010-2011 which corresponded to the highest effective precipitation Pe. In general, the IWP (€.m-3) varied amongcrops but crops such as: onion (4.14, 1.98 and 2.77 respectively for the three years), potato (2.79, 1.69 and 1.62 respectively for the three years), carrot (1.37, 1.70 and 1.80 respectively for the three years) and barley (1.21, 1.16 and 0.68 respectively for the three years) showed the higher values. Thus, it is highlighted the y could be included into the cropping pattern which would maximize the famer’s gross income in the irrigation district.

Respuesta transcripcional de Populus a bifenilos policlorados: Aspectos aplicados a la fitorremediación

La degradación del suelo ha adquirido una magnitud preocupante. Los métodos tradicionales de descontaminación, son costosos e insuficientes. La fitorremediación representa una alternativa eficaz, de bajo coste, respetuosa con el medio ambiente, que además mejora las propiedades del suelo, si bien ha habido desarrollos relevantes en la última década. Desde el punto de vida científico, el reto principal es descifrar las rutas metabólicas implicadas en respuesta a contaminantes y comprender su regulación. Esta información es imprescindible si aspiramos a mejorar las capacidades naturales de algunas especies vegetales para remediar los suelos contaminados. Los estudios de esta Tesis se han centrado en Populus, el mejor modelo forestal disponible a raíz de la secuenciación de su genoma completo. Por otra parte, Populus tiene una gran capacidad natural para la degradación de contaminantes orgánicos, lo que explica su predominio en los programas forestales de fitorremediación que se desarrollan actualmente. Hemos elegido en concreto al híbrido Populus tremula x P. alba, por la facilidad con que se cultiva y su particular interés biotecnológico. La presente Tesis plantea un estudio comprehensivo de la respuesta molecular a bifenilos policlorados (PCBs), una familia de contaminantes orgánicos persistentes de particular relevancia a escala mundial. Se ha utilizado para ello una aproximación transcriptómica, basada en tecnología RNA-seq, para identificar los genes implicados en el metabolismo de los compuestos in planta y cuantificar sus niveles de activación en distintas situaciones controladas. La tesis pretende asimismo definir el control transcripcional subyacente a la respuesta bioquímica frente a este tipo de contaminantes. Resulta sorprendente que dicha respuesta sea prácticamente desconocida a nivel molecular, a pesar de su gran potencial aplicado en el contexto de la tecnología fitorremediadora. Para desarrollar este proyecto aplicamos a nuestros cultivos de chopo híbridos concentraciones diferentes de Aroclor 1221, una mezcla de PCBs muy utilizada a nivel comercial durante décadas, su uso está prohibido hoy internacionalmente. Y tomamos muestras de RNA a dos concentraciones y dos momentos distintos de exposición al contaminante, generando así una matriz de cuatro elementos con sus controles correspondientes. Con el fin de incrementar la especificidad de nuestro análisis, consideramos sobre todo los genes diferencialmente expresados más significativos según cuatro algoritmos estadísticos distintos. Por otra parte, realizamos análisis funcionales con herramientas bioinformáticas basadas en comparaciones de secuencias y en redes de co-expresión génica. La respuesta de los genes de particular interés fue validada mediante tecnología qRT-PCR (reacción de la polimerasa en cadena cuantitativa en tiempo real). Se trata del primer estudio comprehensivo de la respuesta de un organismo vegetal ante la presencia de PCBs. Este estudio nos ha permitido identificar una cantidad considerable de genes estructurales y reguladores, definiendo nuevos factores de transcripción cuya expresión es proporcional a la concentración de contaminante en el medio o al tiempo de exposición al mismo. Los análisis de correlación nos permiten afirmar en que la respuesta metabólica a PCBs, incluyendo posibles rutas degradadoras, participan en al menos quince factores de transcripción y unas cuarenta proteínas o enzimas que resultan particularmente inducidas. Entre las familias implicadas destacan los citocromos P450, la glutatión transferasas, las deshidrogenasas reductasas (short-chain dehydrogenase reductase) y las proteínas MDR (multi-drug resistance). Mientras que los factores de transcripción encontrados pertenecen a la familia de ZF-TF, MYBs, WRKYs entre otros. También identificamos proteínas de función desconocida que no se habían vinculado previamente a este tipo de respuestas en plantas, como la CSP (cold-shock domain proteins). Para estudiar su posible relación con la presencia de PCBs, se caracterizó un gen de esta familia detectado mediante espectrometría de masas en tándem (MS/MS) a partir de mapas IEF x SDS-PAGE (isoelectro focusing x sodium dodecyl sulphate- polyacrylamide gel electrophoresis) de alta resolución. Mediante qRT-PCR pudimos confirmar la inducción del gen correspondiente, ortólogo a PtCSP4 de P. trichocarpa (Potri.004g172600), en respuesta a Aroclor 1221. El análisis fenotípico de las líneas transgénicas de Arabidopsis thaliana que sobre-expresaba la proteína CSP de chopo híbrido confirmó un papel para la misma tolerancia a PCBs, posiblemente a través de mecanismos reguladores que activan proteínas MDR. Este trabajo, además de aportar datos novedosos sobre los mecanismos moleculares desencadenados por la presencia de un PCB en Populus, utilizado aquí como sistema modelo. Con ello se demuestra el potencial de las especies arbóreas no solo como agentes descontaminantes, ya explotado comercialmente, sino también como fuente potencial de genes interesantes. Entre los genes identificados en esta Tesis hay candidatos evidentes a participar en mecanismos de tolerancia al estrés inducido por la contaminación y también rutas metabólicas degradadores de PCBs. Precisamente la posibilidad de degradar al contaminante confiere particular interés a este tipo de estudios frente a la fitorremediación de metales pesados y otros contaminantes elementales. La comparación de los datos generados en este estudio con estudios análogos que se realicen en el futuro con otras especies y xenobióticos, contribuirán a definir mejor la respuesta de las plantas ante la contaminación orgánica y mejorar su potencial descontaminante. ABSTRACT Soil degradation has acquired a disturbing magnitude. Traditional methods of decontamination are expensive and insufficient. Phytoremediation represent an effective alternative, low cost, respectful of the environment, that also improves soil properties, although there have been relevant developments in the last decade. From a life scientist, the challenge is to decipher the major metabolic pathways involved in response to pollutants and understand their regulation. This information is essential if we desire to enhance the natural abilities of some plant species to remediate contaminated soils. This thesis studies have focused on Populus, the best available forestry model following the sequencing of the entire genome. Moreover, Populus has a natural ability to degrade organic pollutants, which explains its predominance in phytoremediation forestry programs currently being developed. We have chosen specifically to hybrid Populus tremula x P. alba, the ease with which it is grown and its particular biotechnological interest. This thesis presents a comprehensive study of the molecular response to polychlorinated biphenyls (PCBs), a family of persistent organic pollutants of particular relevance worldwide. It has been used for a transcriptomic approach using RNA-seq technology, to identify genes involved in the metabolism of compounds in plant and quantify their levels of activation in different controlled situations. The thesis also aims to define the underlying transcriptional control the biochemical response to these pollutants. It is surprising that the response is virtually unknown at the molecular level, despite its great potential applied in the context of phytoremediation technology. To develop this project we applied our hybrid poplar crops different concentrations of Aroclor 1221, a mixture of PCBs widely used commercially for decades, its use is now banned internationally. And we RNA samples at two different concentrations and times of exposure to the pollutant, generating an array of four elements with their corresponding controls. In order to increase the specificity of our analysis, we consider mainly the most significant differentially expressed genes in four different statistical algorithms. Moreover, functional analyzes conducted with bioinformatics tools based on sequence comparisons and networks gene co-expression. The response of genes of particular interest was validated by qRT-PCR (polymerase reaction chain in real-time quantitative. This is the first comprehensive study of the response of a plant organism in the presence of PCBs. This study allowed us to identify a considerable amount of structural and regulatory genes, defining new transcription factors whose expression is proportional to the concentration of contaminant in the middle or at the time of exposure. Correlation analyzes allow us to affirm that the metabolic response to PCBs, including possible degradative pathways, at least fifteen involved in transcription factors and forty proteins or enzymes which are particularly induced. Among the families involved include cytochromes P450, the glutathione transferases, dehydrogenases reductases (short -chain dehydrogenase reductase) and MDR proteins (multi - drug resistance). While transcription factors belong to the family found ZF-TF, MYBs, WRKYs among others. We also identify proteins of unknown function that had not been previously linked to such responses in plants such as CSP (cold- shock domain proteins). To study their possible relationship with the presence of PCBs, a gene in this family was characterized and was detected by tandem mass spectrometry (MS/MS) from maps IEF x SDS -PAGE (sodium dodecyl isoelectro x sulphate- polyacrylamide gel electrophoresis) of high resolution. By qRT -PCR could confirm the induction of the corresponding gene, ortholog to PtCSP4 of P. trichocarpa (Potri.004g172600), in response to Aroclor 1221. Phenotypic analysis of transgenic Arabidopsis thaliana lines over- expressing the protein CSP poplar hybrid confirmed a role for PCBs same tolerance, possibly through regulatory mechanisms activated MDR proteins. This work, in addition to providing new data on the molecular mechanisms triggered by the presence of PCBs in Populus, used here as a model system. Thus the potential of tree species not only as decontamination agents, and commercially exploited, but also as a potential source of interesting genes is shown. Among the genes identified in this thesis there are evident candidates to participate in tolerance mechanisms to stress induced by pollution and degrading metabolic pathways of PCBs. Precisely the possibility of degrading the pollutant attaches particular interest to this type of study off the phytoremediation of heavy metals and other elemental pollutants. The comparison of the data generated in this study with similar studies carried out in the future with other species and xenobiotics contribute to better define the response of plants to organic pollution and improve their decontamination potential.

Contribute to the Study of Vertical Distribution of Conventional No-Till Seeders and Spatial Variability of Seed Depth Placement of Maize in Alentejo, Portugal

Entre os vários fatores que contribuem para a produção de uma cultura de milho, a distribuição vertical dos semeadores avaliada através da localização da semente em profundidade é um fator-chave, especialmente na técnica de sementeira direta. Simultaneamente, dada a complexidade dos ecossistemas naturais e agrícolas em sistemas de agricultura de conservação, a gestão diferenciada e localizada das parcelas assume um importante papel na análise e gestão da variabilidade das propriedades do solo e estabelecimento das culturas, nomeadamente utilizando informação geo referenciada e tecnologia expedita. Assim, o principal objetivo desta Tese foi a avaliação em culturas de milho da variabilidade espacial da localização de semente em profundidade e estabelecimento da cultura em sementeira direta usando sistemas convencionais de controlo de profundidade, tendo-se comparado com diferentes sistemas de mobilização e recorrendo a tecnologias de agricultura de precisão. Os ensaios decorreram na região Mediterrânea do Alentejo, em propriedades agrícolas no decorrer das campanhas de 2010, 2011, 2012 e 2015 em 6 diferentes campos experimentais. O trabalho experimental consistiu em ensaios com avaliações in loco do solo e cultura, consumo de combustível das operações e deteção remota. Os resultados obtidos indicam que não só o sistema de mobilização afetou a localização da semente em profundidade, como em sementeira direta a profundidade de sementeira foi afetada pelo teor de humidade do solo, resistência do solo à profundidade e velocidade da operação de sementeira. Adicionalmente observaram-se condições heterogéneas de emergência e estabelecimento da cultura afetadas por condições físicas de compactação do solo. Comparando os diferentes sistemas de mobilização, obteve-se uma significativa redução de combustível para a técnica de sementeira direta, apesar de se terem observado diferenças estatísticas significativas considerando diferentes calibrações de profundidade de sementeira Do trabalho realizado nesta Tese ressalva-se a importância que as tecnologias de agricultura de precisão podem ter no acompanhamento e avaliação de culturas em sementeira direta, bem como a necessidade de melhores procedimentos no controlo de profundidade dos semeadores pelo respetivos operadores ou ao invés, a adoção de semeadores com mecanismos ativos de controlo de profundidade. ABSTRACT Among the various factors that contribute towards producing a successful maize crop, seeders vertical distribution evaluated through seed depth placement is a key determinant, especially under a no-tillage technique. At the same time in conservation agriculture systems due to the complexity of natural and agricultural ecosystems site specific management became an important approach to understand and manage the variability of soil properties and crop establishment, especially when using geo spatial information and affording readily technology Thus, the main objective of this Thesis was to evaluate the spatial variability of seed depth placement and crop establishment in maize crops under no-tillage conditions compared to different tillage systems, using conventional seed depth control no till seeders and precision farming technologies. Trials were carried out in the Mediterranean region of Alentejo, in private farms along the sowing operations season over the years 2010, 2011, 2012 and 2015 in 6 different experimental fields. Experimental work covered field tests with in loco soil and crop evaluations, fuel operation evaluations and aerial sensing. The results obtained indicate that not only tillage system affected seed depth placement but under no till conditions seed depth was affected by soil moisture content, soil resistance to penetration and seeders forward speed. In addition uneven crop seedling and establishment depended on seed depth placement and could be affected by physical problems of compaction layers. Significant reduction in fuel consumption was observed for no till operations although significant differences observed according to different setting calibrations of seed depth control. According to the results, precision agriculture is an important tool to evaluate crops under no till conditions and seed depth mechanisms should be more accurate by the operators or is determinant the adoption of new active depth control technology to improve seeders performance.

Quantifying the relationship between drainage networks at hillslope scale and particle size distribution at pedon scale

Nowadays, translating information about hydrologic and soil properties and processes across scales has emerged as a major theme in soil science and hydrology, and suitable theories for upscaling or downscaling hydrologic and soil information are being looked forward. The recognition of low-order catchments as self-organized systems suggests the existence of a great amount of links at different scales between their elements. The objective of this work was to research in areas of homogeneous bedrock material, the relationship between the hierarchical structure of the drainage networks at hillslope scale and the heterogeneity of the particle-size distribution at pedon scale. One of the most innovative elements in this work is the choice of the parameters to quantify the organization level of the studied features. The fractal dimension has been selected to measure the hierarchical structure of the drainage networks, while the Balanced Entropy Index (BEI) has been the chosen parameter to quantify the heterogeneity of the particle-size distribution from textural data. These parameters have made it possible to establish quantifiable relationships between two features attached to different steps in the scale range. Results suggest that the bedrock lithology of the landscape constrains the architecture of the drainage networks developed on it and the particle soil distribution resulting in the fragmentation processes.

Quantifying the relationship between drainage networks at hillslope scale and particle size distribution at pedon scale

Nowadays, translating information about hydrologic and soil properties and processes across scales has emerged as a major theme in soil science and hydrology, and suitable theories for upscaling or downscaling hydrologic and soil information are being looked forward. The recognition of low-order catchments as self-organized systems suggests the existence of a great amount of links at different scales between their elements. The objective of this work was to research in areas of homogeneous bedrock material, the relationship between the hierarchical structure of the drainage networks at hillslope scale and the heterogeneity of the particle-size distribution at pedon scale. One of the most innovative elements in this work is the choice of the parameters to quantify the organization level of the studied features. The fractal dimension has been selected to measure the hierarchical structure of the drainage networks, while the Balanced Entropy Index (BEI) has been the chosen parameter to quantify the heterogeneity of the particle-size distribution from textural data. These parameters have made it possible to establish quantifiable relationships between two features attached to different steps in the scale range. Results suggest that the bedrock lithology of the landscape constrains the architecture of the drainage networks developed on it and the particle soil distribution resulting in the fragmentation processes.

Impact of fire and post-fire management techniques on soil chemical properties

The effects of fire ( Control burned soil) and two emergency stabilisation techniques (grass Seeding and straw Mulching ) on 20 chemical characteristics were evaluated on 0 – 5 cm top-soils sampled 1, 90, 180 and 365 days after an experimental fi re in a steep shrubland of a temperate-humid region (NW Spain). Most part of pH (in H 2 O and KCl) variance was explained by the sampling date. No clear temporal trends were identi fi able for total soil C and N content, likely due to the large SOM pool in these soils; however, changes on soil δ 13 C were explained by the deposition of 13 C-depleted ashes, followed by its progressive erosion, while those on soil δ 15 N were a consequence of fi re induced N outputs. After the fi re, NH 4 + – N, P, Na, K, Mg, Ca, Mn, Cu, Zn and B concentrations increased, while those of NO 3 − – N, Al, Fe and Co did not vary significantly. Despite a significant decline with time, concentrations of Mg, Ca and Mn at the end of the study were still higher than in unburned soil, while those of K, Cu, Zn and B were similar to the pre-fire levels and those of NH 4 + – N, P and Na were below pre-fire values. Mulching and Seeding treatments for burned soil emergency stabilisation had significant effects on soil δ 15 N and extractable K, Mg and Ca, while data were inconclusive for their possible effects on the extractable Al, Fe and Co

Effect of conservation tillage on soil physical properties, in-situ rainwater harvesting, and erosion control in arid and semi-arid regions

La escasez del agua en las regiones áridas y semiáridas se debe a la escasez de precipitaciones y la distribución desigual en toda la temporada, lo que hace de la agricultura de secano una empresa precaria. Un enfoque para mejorar y estabilizar el agua disponible para la producción de cultivos en estas regiones es el uso de tecnologías de captación de agua de lluvia in situ y su conservación. La adopción de los sistemas de conservación de la humedad del suelo in situ, tales como la labranza de conservación, es una de las estrategias para mejorar la gestión de la agricultura en zonas áridas y semiáridas. El objetivo general de esta tesis ha sido desarrollar una metodología de aplicación de labranza de depósito e investigar los efectos a corto plazo sobre las propiedades físicas del suelo de las diferentes prácticas de cultivo que incluyen labranza de depósito: (reservoir tillage, RT), la laboreo mínimo: (minimum tillage, MT), la no laboreo: (zero tillage, ZT) y laboreo convencional: (conventional tillage, CT) Así como, la retención de agua del suelo y el control de la erosión del suelo en las zonas áridas y semiáridas. Como una primera aproximación, se ha realizado una revisión profunda del estado de la técnica, después de la cual, se encontró que la labranza de depósito es un sistema eficaz de cosecha del agua de lluvia y conservación del suelo, pero que no ha sido evaluada científicamente tanto como otros sistemas de labranza. Los trabajos experimentales cubrieron tres condiciones diferentes: experimentos en laboratorio, experimentos de campo en una región árida, y experimentos de campo en una región semiárida. Para investigar y cuantificar el almacenamiento de agua a temperatura ambiente y la forma en que podría adaptarse para mejorar la infiltración del agua de lluvia recolectada y reducir la erosión del suelo, se ha desarrollado un simulador de lluvia a escala de laboratorio. Las características de las lluvias, entre ellas la intensidad de las precipitaciones, la uniformidad espacial y tamaño de la gota de lluvia, confirmaron que las condiciones naturales de precipitación son simuladas con suficiente precisión. El simulador fue controlado automáticamente mediante una válvula de solenoide y tres boquillas de presión que se usaron para rociar agua correspondiente a diferentes intensidades de lluvia. Con el fin de evaluar el método de RT bajo diferentes pendientes de superficie, se utilizaron diferentes dispositivos de pala de suelo para sacar un volumen idéntico para hacer depresiones. Estas depresiones se compararon con una superficie de suelo control sin depresión, y los resultados mostraron que la RT fue capaz de reducir la erosión del suelo y la escorrentía superficial y aumentar significativamente la infiltración. Luego, basándonos en estos resultados, y después de identificar la forma adecuada de las depresiones, se ha diseñado una herramienta combinada (sistema integrado de labranza de depósito (RT)) compuesto por un arado de una sola línea de chisel, una sola línea de grada en diente de pico, sembradora modificada, y rodillo de púas. El equipo fue construido y se utiliza para comparación con MT y CT en un ambiente árido en Egipto. El estudio se realizó para evaluar el impacto de diferentes prácticas de labranza y sus parámetros de funcionamiento a diferentes profundidades de labranza y con distintas velocidades de avance sobre las propiedades físicas del suelo, así como, la pérdida de suelo, régimen de humedad, la eficiencia de recolección de agua, y la productividad de trigo de invierno. Los resultados indicaron que la RT aumentó drásticamente la infiltración, produciendo una tasa que era 47.51% más alta que MT y 64.56% mayor que la CT. Además, los resultados mostraron que los valores más bajos de la escorrentía y pérdidas de suelos 4.91 mm y 0.65 t ha-1, respectivamente, se registraron en la RT, mientras que los valores más altos, 11.36 mm y 1.66 t ha-1, respectivamente, se produjeron en el marco del CT. Además, otros dos experimentos de campo se llevaron a cabo en ambiente semiárido en Madrid con la cebada y el maíz como los principales cultivos. También ha sido estudiado el potencial de la tecnología inalámbrica de sensores para monitorizar el potencial de agua del suelo. Para el experimento en el que se cultivaba la cebada en secano, se realizaron dos prácticas de labranza (RT y MT). Los resultados mostraron que el potencial del agua del suelo aumentó de forma constante y fue consistentemente mayor en MT. Además, con independencia de todo el período de observación, RT redujo el potencial hídrico del suelo en un 43.6, 5.7 y 82.3% respectivamente en comparación con el MT a profundidades de suelo (10, 20 y 30 cm, respectivamente). También se observaron diferencias claras en los componentes del rendimiento de los cultivos y de rendimiento entre los dos sistemas de labranza, el rendimiento de grano (hasta 14%) y la producción de biomasa (hasta 8.8%) se incrementaron en RT. En el experimento donde se cultivó el maíz en regadío, se realizaron cuatro prácticas de labranza (RT, MT, ZT y CT). Los resultados revelaron que ZT y RT tenían el potencial de agua y temperatura del suelo más bajas. En comparación con el tratamiento con CT, ZT y RT disminuyó el potencial hídrico del suelo en un 72 y 23%, respectivamente, a la profundidad del suelo de 40 cm, y provocó la disminución de la temperatura del suelo en 1.1 y un 0.8 0C respectivamente, en la profundidad del suelo de 5 cm y, por otro lado, el ZT tenía la densidad aparente del suelo y resistencia a la penetración más altas, la cual retrasó el crecimiento del maíz y disminuyó el rendimiento de grano que fue del 15.4% menor que el tratamiento con CT. RT aumenta el rendimiento de grano de maíz cerca de 12.8% en comparación con la ZT. Por otra parte, no hubo diferencias significativas entre (RT, MT y CT) sobre el rendimiento del maíz. En resumen, según los resultados de estos experimentos, se puede decir que mediante el uso de la labranza de depósito, consistente en realizar depresiones después de la siembra, las superficies internas de estas depresiones se consolidan de tal manera que el agua se mantiene para filtrarse en el suelo y por lo tanto dan tiempo para aportar humedad a la zona de enraizamiento de las plantas durante un período prolongado de tiempo. La labranza del depósito podría ser utilizada como un método alternativo en regiones áridas y semiáridas dado que retiene la humedad in situ, a través de estructuras que reducen la escorrentía y por lo tanto puede resultar en la mejora de rendimiento de los cultivos. ABSTRACT Water shortage in arid and semi-arid regions stems from low rainfall and uneven distribution throughout the season, which makes rainfed agriculture a precarious enterprise. One approach to enhance and stabilize the water available for crop production in these regions is to use in-situ rainwater harvesting and conservation technologies. Adoption of in-situ soil moisture conservation systems, such as conservation tillage, is one of the strategies for upgrading agriculture management in arid and semi-arid environments. The general aim of this thesis is to develop a methodology to apply reservoir tillage to investigate the short-term effects of different tillage practices including reservoir tillage (RT), minimum tillage (MT), zero tillage (ZT), and conventional tillage (CT) on soil physical properties, as well as, soil water retention, and soil erosion control in arid and semi-arid areas. As a first approach, a review of the state of the art has been done. We found that reservoir tillage is an effective system of harvesting rainwater and conserving soil, but it has not been scientifically evaluated like other tillage systems. Experimental works covered three different conditions: laboratory experiments, field experiments in an arid region, and field experiments in a semi-arid region. To investigate and quantify water storage from RT and how it could be adapted to improve infiltration of harvested rainwater and reduce soil erosion, a laboratory-scale rainfall simulator was developed. Rainfall characteristics, including rainfall intensity, spatial uniformity and raindrop size, confirm that natural rainfall conditions are simulated with sufficient accuracy. The simulator was auto-controlled by a solenoid valve and three pressure nozzles were used to spray water corresponding to different rainfall intensities. In order to assess the RT method under different surface slopes, different soil scooping devices with identical volume were used to create depressions. The performance of the soil with these depressions was compared to a control soil surface (with no depression). Results show that RT was able to reduce soil erosion and surface runoff and significantly increase infiltration. Then, based on these results and after selecting the proper shape of depressions, a combination implement integrated reservoir tillage system (integrated RT) comprised of a single-row chisel plow, single-row spike tooth harrow, modified seeder, and spiked roller was developed and used to compared to MT and CT in an arid environment in Egypt. The field experiments were conducted to evaluate the impact of different tillage practices and their operating parameters at different tillage depths and different forward speeds on the soil physical properties, as well as on runoff, soil losses, moisture regime, water harvesting efficiency, and winter wheat productivity. Results indicated that the integrated RT drastically increased infiltration, producing a rate that was 47.51% higher than MT and 64.56% higher than CT. In addition, results showed that the lowest values of runoff and soil losses, 4.91 mm and 0.65 t ha-1 respectively, were recorded under the integrated RT, while the highest values, 11.36 mm and 1.66 t ha -1 respectively, occurred under the CT. In addition, two field experiments were carried out in semi-arid environment in Madrid with barley and maize as the main crops. For the rainfed barley experiment, two tillage practices (RT, and MT) were performed. Results showed that soil water potential increased quite steadily and were consistently greater in MT and, irrespective of the entire observation period, RT decreased soil water potential by 43.6, 5.7, and 82.3% compared to MT at soil depths (10, 20, and 30 cm, respectively). In addition, clear differences in crop yield and yield components were observed between the two tillage systems, grain yield (up to 14%) and biomass yield (up to 8.8%) were increased by RT. For the irrigated maize experiment, four tillage practices (RT, MT, ZT, and CT) were performed. Results showed that ZT and RT had the lowest soil water potential and soil temperature. Compared to CT treatment, ZT and RT decreased soil water potential by 72 and 23% respectively, at soil depth of 40 cm, and decreased soil temperature by 1.1 and 0.8 0C respectively, at soil depth of 5 cm. Also, ZT had the highest soil bulk density and penetration resistance, which delayed the maize growth and decreased the grain yield that was 15.4% lower than CT treatment. RT increased maize grain yield about 12.8% compared to ZT. On the other hand, no significant differences among (RT, MT, and CT) on maize yield were found. In summary, according to the results from these experiments using reservoir tillage to make depressions after seeding, these depression’s internal surfaces are consolidated in such a way that the water is held to percolate into the soil and thus allowing time to offer moisture to the plant rooting zone over an extended period of time. Reservoir tillage could be used as an alternative method in arid and semi-arid regions and it retains moisture in-situ, through structures that reduce runoff and thus can result in improved crop yields.

Short-term effects of four tillage practices on soil physical properties, soil water potential, and maize yield

The area cultivated using conservation tillage has recently increased in central Spain. However, soil compaction and water retention with conservation tillage still remains a genuine concern for landowners in this region be- cause of its potential effect on the crop growth and yield. The aim of this research is to determine the short- term influences of four tillage treatments on soil physical properties. In the experiment, bulk density, cone index, soil water potential, soil temperature and maize (Zea mays L.) productivity have been measured. A field experiment was established in spring of 2013 on a loamy soil. The experiment compared four tillage methods (zero tillage, ZT; reservoir tillage, RT; minimum tillage, MT; and conventional tillage, CT). Soil bulk density and soil cone index were measured during maize growing season and at harvesting time. Furthermore, the soil water potential was monitored by using a wireless sensors network with sensors at 20 and 40 cm depths. Also, soil temperatures were registered at depths of 5 and 12 cm. Results indicated that there were significant differ- ences between soil bulk density and cone index of ZT method and those of RT, MT, and CT, during the growing season; although, this difference was not significant at the time of harvesting in some soil layers. Overall, in most soil layers, tillage practice affected bulk density and cone index in the order: ZT N RT N MT N CT. Regardless oftheentireobservationperiod,results exhibited that soils under ZT and RT treatments usually resulted in higher water potential and lower soil temperature than the other two treatments at both soil depths. In addition, clear differences in maize grain yield were observed between ZT and CT treatments, with a grain yield (up to 15.4%) increase with the CT treatment. On the other hand, no significant differences among (RT, MT, and CT) on maizeyieldwerefound.Inconclusion,the impact of soil compaction increase and soil temperature decrease,pro- duced by ZT treatment is a potential reason for maize yield reduction in this tillage method. We found that RT could be certainly a viable option for farmers incentral Spain,particularly when switching to conservation tillage from conventional tillage. This technique showed a moderate and positive effect on soil physical properties and increased maize yields compared to ZT and MT, and provides an opportunity to stabilize maize yields compared to CT.

Effect of integrated reservoir tillage for in-situ rainwater harvesting and other tillage practices on soil physical properties

There is a need for in-situ soil moisture conservation in arid and semi-arid regions due to insufficient rainfall for agriculture. For this purpose, a combination implement [integrated reservoir tillage system (RT)] comprised of a single-row chisel plow, single-row spike tooth harrow, modified seeder, and spiked roller was developed and compared to the popular tillage practices, viz., minimum tillage (MT) and conventional tillage (CT) in an arid Mediterranean environment in Egypt. The different tillage practices were conducted at tillage depths of 15, 20, and 25 cm and forward speeds of 0.69, 1, 1.25, and 1.53 m s-1. Some soil physical properties, runoff, soil loss, water harvesting efficiency and yield of wheat were evaluated. The different tillage practices caused significant differences in soil physical properties as the RT increased soil infiltration, producing a rate of 48% and 65% higher than that obtained in MT and CT, respectively. The lowest values of runoff and soil loss were recorded under RT as 4.91 mm and 0.65 t ha-1, whereas the highest values were recorded under CT as 11.36 mm and 1.66 t ha-1, respectively. In conclusion, the RT enhanced the infiltration rate, increased water harvesting efficiency, reduced runoff and achieved the highest yield of wheat. The best tillage operating parameters appeared to be at a tillage depth of 20 cm and speed between 1.00 and 1.25 m s-1.

Nonlinear and Scaling Processes in Hydrology and Soil Science

Hydrology is the study of the properties, distribution and effects of water on the Earth?s soil, rocks and atmosphere. It also encompasses the study of the hydrologic cycle of precipitation, runoff, infiltration, storage, and evaporation, including the physical, biological and chemical reaction of water with the earth and its relation to life?.

Community Structure in Soil Porous System

Diffusion controls the gaseous transport process in soils when advective transport is almost null. Knowledge of the soil structure and pore connectivity are critical issues to understand and modelling soil aeration, sequestration or emission of greenhouse gasses, volatilization of volatile organic chemicals among other phenomena. In the last decades these issues increased our attention as scientist have realize that soil is one of the most complex materials on the earth, within which many biological, physical and chemical processes that support life and affect climate change take place. A quantitative and explicit characterization of soil structure is difficult because of the complexity of the pore space. This is the main reason why most theoretical approaches to soil porosity are idealizations to simplify this system. In this work, we proposed a more realistic attempt to capture the complexity of the system developing a model that considers the size and location of pores in order to relate them into a network. In the model we interpret porous soils as heterogeneous networks where pores are represented by nodes, characterized by their size and spatial location, and the links representing flows between them. In this work we perform an analysis of the community structure of porous media of soils represented as networks. For different real soils samples, modelled as heterogeneous complex networks, spatial communities of pores have been detected depending on the values of the parameters of the porous soil model used. These types of models are named as Heterogeneous Preferential Attachment (HPA). Developing an exhaustive analysis of the model, analytical solutions are obtained for the degree densities and degree distribution of the pore networks generated by the model in the thermodynamic limit and shown that the networks exhibit similar properties to those observed in other complex networks. With the aim to study in more detail topological properties of these networks, the presence of soil pore community structures is studied. The detection of communities of pores, as groups densely connected with only sparser connections between groups, could contribute to understand the mechanisms of the diffusion phenomena in soils.

3D Soil Images Structure Quantification using Relative Entropy

Soil voids manifest the cumulative effect of local pedogenic processes and ultimately influence soil behavior - especially as it pertains to aeration and hydrophysical properties. Because of the relatively weak attenuation of X-rays by air, compared with liquids or solids, non-disruptive CT scanning has become a very attractive tool for generating three-dimensional imagery of soil voids. One of the main steps involved in this analysis is the thresholding required to transform the original (greyscale) images into the type of binary representation (e.g., pores in white, solids in black) needed for fractal analysis or simulation with Lattice?Boltzmann models (Baveye et al., 2010). The objective of the current work is to apply an innovative approach to quantifying soil voids and pore networks in original X-ray CT imagery using Relative Entropy (Bird et al., 2006; Tarquis et al., 2008). These will be illustrated using typical imagery representing contrasting soil structures. Particular attention will be given to the need to consider the full 3D context of the CT imagery, as well as scaling issues, in the application and interpretation of this index.